Clone Sequence Records
BS03850.3prime Sequence
618 bp (617 high quality bases) assembled on 2005-12-01
> BS03850.3prime
ATGGTCTAGAAAGCTTCTAGGACAAACTATGATTATAGGGCGAAGCGAAA
TCGCGTTGATATGCCGCCGCCGGATGCAGATGATGTGGATGAATTGCCGG
TGGTGGCGCCTGATGGTGACCATTCATACTCCCATAGACGTCGGACCGCG
ATTTGTGGGAGTTCGAGGGCGTGCCGCTCAGCAGCTCAGCCATGAATCCG
ATGTAGGTGATGGCCAAGCGAAGGGTTTCGATGCGGGACAGTCGTTTCTC
GTAGGCGAAGGTGGGCACCTTGCGGCGCAACTTGTCGAAGGCCTCGTTTA
GGTTAAACATGCGACGGCGTTCGCGGATATTTGCAGCTCTCCGTTGGGCC
ATTGATGCCACACGGCGACGCGTTTTCTTCGAGGAGCTGGAGGAGCCGTT
GGCCCTCCCATTTGTCGACGGACGCTGGGGCACCAAAGGAGTTACTTGCG
AGCGCTGCCACAGAGACAAGTCGGTGCAGGGAAAACCGGCGATGAGCTCT
TGGTATGGAACAATGGGCGGCGGTGGAGCCTCCTGACCCCAAAGCGGCTG
GAATGGAACATCCGGCATGTAGGTGGGCTGGTCAATGGGATGTGGATGCT
GCATGTCGACTGATAACT
BS03850.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6913-PA | 588 | Fer3-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..673 | 605..17 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693573..11694021 | 17..465 | 2245 | 100 | Plus |
| 3R | 32079331 | 3R | 11694088..11694227 | 466..605 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:19:36 has no hits.
BS03850.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:19 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:30 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:50 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..683 | 8..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:40 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..683 | 8..612 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:40 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11694088..11694231 | 466..612 | 97 | | Plus |
| 3R | 11693563..11694021 | 8..465 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:50 Download gff for
BS03850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519285..7519743 | 8..465 | 99 | <- | Plus |
| arm_3R | 7519810..7519953 | 466..612 | 97 | | Plus |
BS03850.5prime Sequence
618 bp (617 high quality bases) assembled on 2005-11-29
> BS03850.5prime
GAAGTTATCAGTCGACATGCAGCATCCACATCCCATTGACCAGCCCACCT
ACATGCCGGATGTTCCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCG
CCGCCCATTGTTCCATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGA
CTTGTCTCTGTGGCAGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTC
CGTCGACAAATGGGAGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACG
CGTCGCCGTGTGGCATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGA
ACGCCGTCGCATGTTTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCA
AGGTGCCCACCTTCGCCTACGAGAAACGACTGTCCCGCATCGAAACCCTT
CGCTTGGCCATCACCTACATCGGATTCATGGCTGAGCTGCTGAGCGGCAC
GCCCTCGAACTCCCACAAATCGCGGTCCGACGTCTATGGGAGTATGAATG
GTCACCATCAGGCGCCACCACCGGCAATTCATCCACATCATCTGCATCCG
GCGGCGGCATATCAACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTC
CTAGAAGCTTTCTAGACC
BS03850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6913-PA | 588 | Fer3-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..673 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693573..11694021 | 604..156 | 2245 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:57:29 has no hits.
BS03850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:20 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:31 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:39 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..683 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:41 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..683 | 9..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:41 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693563..11694021 | 156..613 | 99 | <- | Minus |
| 3R | 11694088..11694231 | 9..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:39 Download gff for
BS03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519285..7519743 | 156..613 | 99 | <- | Minus |
| arm_3R | 7519810..7519953 | 9..155 | 97 | | Minus |
BS03850.complete Sequence
620 bp (620 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634794
> BS03850.complete
GAAGTTATCAGTCGACATGCAGCATCCACATCCCATTGACCAGCCCACCT
ACATGCCGGATGTTCCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCG
CCGCCCATTGTTCCATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGA
CTTGTCTCTGTGGCAGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTC
CGTCGACAAATGGGAGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACG
CGTCGCCGTGTGGCATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGA
ACGCCGTCGCATGTTTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCA
AGGTGCCCACCTTCGCCTACGAGAAACGACTGTCCCGCATCGAAACCCTT
CGCTTGGCCATCACCTACATCGGATTCATGGCTGAGCTGCTGAGCGGCAC
GCCCTCGAACTCCCACAAATCGCGGTCCGACGTCTATGGGAGTATGAATG
GTCACCATCAGGCGCCACCACCGGCAATTCATCCACATCATCTGCATCCG
GCGGCGGCATATCAACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTC
CTAGAAGCTTTCTAGACCAT
BS03850.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 588 | CG6913-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..673 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693573..11694021 | 604..156 | 2245 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:39:10 has no hits.
BS03850.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:27 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:12 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 47..649 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:46 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 86..673 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:27 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 47..649 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:37 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 86..673 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:37 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693573..11694021 | 156..604 | 100 | <- | Minus |
| 3R | 11694088..11694226 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:46 Download gff for
BS03850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519295..7519743 | 156..604 | 100 | <- | Minus |
| arm_3R | 7519810..7519948 | 17..155 | 100 | | Minus |
BS03850.pep Sequence
Translation from 16 to 603
> BS03850.pep
MQHPHPIDQPTYMPDVPFQPLWGQEAPPPPIVPYQELIAGFPCTDLSLWQ
RSQVTPLVPQRPSTNGRANGSSSSSKKTRRRVASMAQRRAANIRERRRMF
NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIGFMAELLSGTPSNSH
KSRSDVYGSMNGHHQAPPPAIHPHHLHPAAAYQRDFASPYNHSLS*
BS03850.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-PA | 195 | CG6913-PA | 1..195 | 1..195 | 1045 | 100 | Plus |
| Fer1-PA | 251 | CG33323-PA | 55..159 | 69..169 | 198 | 41.8 | Plus |
| Fer1-PB | 256 | CG33323-PB | 69..164 | 71..169 | 197 | 44.6 | Plus |
| Fer2-PE | 273 | CG5952-PE | 122..204 | 63..142 | 177 | 50.6 | Plus |
| Fer2-PB | 274 | CG5952-PB | 122..204 | 63..142 | 177 | 50.6 | Plus |
