Clone Sequence Records
BS03854.3prime Sequence
860 bp (859 high quality bases) assembled on 2005-12-01
> BS03854.3prime
ATGGTCTAGAAAGCTTTCACTTGGTCGCGTCTAGTTTGGCTAGGCCGTCG
GCATATTGGAACTCCGGACTGTTCTCGTACTCGCACATGTCCAGGGCGAT
GACGCAGCTCTCCTTGACCACGCGCTTGTCGTCCTCGGCGTAGCGGTTCA
AGATCTGAATGCAGTCCTCTGTGGCGATGGCGCCAAGGGCCTCGGCACAC
TCGTGACGCACCATTTCGTTTTCCAGGCGATCCTCCAGATTCTCTTGAAG
GAAGGGAATGCTGCAGGGTTCTTGCAGCTGGCCCAGTACGAAGGCCACCT
CGTGGCGGAAGAGGGCGGAAGAGTCCTTAAGTCCCTCGGCAATGGCCAAG
ACACTCTCTTCGGTGCGCAGATTGCGCAGGCTGAACATGGCCCTATATCG
ATCGAACAGGCTCTGCTGGGCATCCAGATAGATGGCCTTCAGCTCGGTGA
CGCTCTTGTCGCCCGCAGTTGGCGGTGAGGGATCAACGGAGGCGTAAGGG
TTGCTGTCATCTACCTTTTGGCCACTCTGCAGCCAGCGGACGCGGTCCAG
AGCAATGGCACATGTTTCGGCCACCTCCACTACCGGATCTTGTTTGTACT
CCTCCAGAATTGGCAGCACATCTGGATGACCAATGGCGCCCATGGCCTCC
GCAGCCTCGTGGCGCACCATCGGCTCCTGGGTGGTGTCCTTTAGCACCTT
GGTGAGGATGTCTAACGCCTGTGCGTCCTGCATCTGACCCAAGCAGTAGG
CCAGCTCATGTTTGAGAAGGGCCGAATCATCGTCAAAGGCTTTGCTGATC
GCCTCGATGGCCGCTCCTCCGCCGATGTTCTTCAGCGTGAAGAGGGCTCG
AAAGCGCTCT
BS03854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2245-PA | 909 | l(3)s1921-RA | 66..909 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 149..992 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746567..31747410 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:56:36 has no hits.
BS03854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:22 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 66..909 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:33 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 66..909 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:35 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 149..997 | 9..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:28 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 149..997 | 9..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:28 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746562..31747410 | 9..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:35 Download gff for
BS03854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572284..27573132 | 9..860 | 99 | | Plus |
BS03854.5prime Sequence
877 bp (825 high quality bases) assembled on 2005-11-29
> BS03854.5prime
GAAGTTATCAGTCGACATGGTTTCGCAGCAGCAAATCGAGGCCATTGGAG
GCGTTCTGAACAACAAGGAACGCCCACTGAAAGAGCGCTTTCGAGCCCTC
TTCACGCTGAAGAACATCGGCGGAGGAGCGGCCATCGAGGCGATCAGCAA
AGCCTTTGACGATGATTCGGCCCTTCTCAAACATGAGCTGGCCTACTGCT
TGGGTCAGATGCAGGACGCACAGGCGTTAGACATCCTCACCAAGGTGCTA
AAGGACACCACCCAGGAGCCGATGGTGCGCCACGAGGCTGCGGAGGCCAT
GGGCGCCATTGGTCATCCAGATGTGCTGCCAATTCTGGAGGAGTACAAAC
AAGATCCGGTAGTGGAGGTGGCCGAAACATGTGCCATTGCTCTGGACCGC
GTCCGCTGGCTGCAGAGTGGCCAAAAGGTAGATGACAGCAACCCTTACGC
CTCCGTTGATCCCTCACCGCCAACTGCGGGCGACAAGAGCGTCACCGAGC
TGAAGGCCATCTATCTGGATGCCCAGCAGAGCCTGTTCGATCGATATAGG
GCCATGTTCAGCCTGCGCAATCTGCGCACCGAAGAGAGTGTCTTGGCCAT
TGCCGAGGGACTTAAGGACTCTTCCGCCCTCTTCCGCCACGAGGTGGCCT
TCGTACTGGGCCAGCTGCAAGAACCCTGCAGCATTCCCTTCCTTCAAGAG
AATCTGGAGGATCGCCTGGAAAACGAAATGGTGCGTCACGAGTGTGCCGA
GGCCCTTGGCGCCATCGCCACAGAGGACTGCATTCAGATCTTGAACCGCT
ACGCCGAGGACGACAAGCGCGTGGTCAAGGAGAGCTGCGTCATCGCCCTG
GACATGTGCGAGTACGAGAACAGTCCG
BS03854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2245-PA | 909 | l(3)s1921-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 84..944 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746615..31747475 | 877..17 | 4305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:18:00 has no hits.
BS03854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:23 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:34 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2245-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:47 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..944 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:25 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 77..944 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:33:25 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746615..31747482 | 9..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:47 Download gff for
BS03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572337..27573204 | 9..877 | 99 | | Minus |
BS03854.complete Sequence
941 bp (941 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634795
> BS03854.complete
GAAGTTATCAGTCGACATGGTTTCGCAGCAGCAAATCGAGGCCATTGGAG
GCGTTCTGAACAACAAGGAACGCCCACTGAAAGAGCGCTTTCGAGCCCTC
TTCACGCTGAAGAACATCGGCGGAGGAGCGGCCATCGAGGCGATCAGCAA
AGCCTTTGACGATGATTCGGCCCTTCTCAAACATGAGCTGGCCTACTGCT
TGGGTCAGATGCAGGACGCACAGGCGTTAGACATCCTCACCAAGGTGCTA
AAGGACACCACCCAGGAGCCGATGGTGCGCCACGAGGCTGCGGAGGCCAT
GGGCGCCATTGGTCATCCAGATGTGCTGCCAATTCTGGAGGAGTACAAAC
AAGATCCGGTAGTGGAGGTGGCCGAAACATGTGCCATTGCTCTGGACCGC
GTCCGCTGGCTGCAGAGTGGCCAAAAGGTAGATGACAGCAACCCTTACGC
CTCCGTTGATCCCTCACCGCCAACTGCGGGCGACAAGAGCGTCACCGAGC
TGAAGGCCATCTATCTGGATGCCCAGCAGAGCCTGTTCGATCGATATAGG
GCCATGTTCAGCCTGCGCAATCTGCGCACCGAAGAGAGTGTCTTGGCCAT
TGCCGAGGGACTTAAGGACTCTTCCGCCCTCTTCCGCCACGAGGTGGCCT
TCGTACTGGGCCAGCTGCAAGAACCCTGCAGCATTCCCTTCCTTCAAGAG
AATCTGGAGGATCGCCTGGAAAACGAAATGGTGCGTCACGAGTGTGCCGA
GGCCCTTGGCGCCATCGCCACAGAGGACTGCATTCAGATCTTGAACCGCT
ACGCCGAGGACGACAAGCGCGTGGTCAAGGAGAGCTGCGTCATCGCCCTG
GACATGTGCGAGTACGAGAACAGTCCGGAGTTCCAATATGCCGACGGCCT
AGCCAAACTAGACGCGACCAAGTGAAAGCTTTCTAGACCAT
BS03854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 909 | CG2245-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-RA | 1114 | CG2245-RA | 84..992 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31746567..31747475 | 925..17 | 4545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:28 has no hits.
BS03854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:28 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:13 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 48..968 | 9..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:27 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 84..991 | 17..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:28 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)s1921-RA | 48..968 | 9..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:04 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nero-RA | 84..991 | 17..924 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:04 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31746568..31747475 | 17..924 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:27 Download gff for
BS03854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27572290..27573197 | 17..924 | 100 | | Minus |
BS03854.pep Sequence
Translation from 16 to 924
> BS03854.pep
MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDD
SALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGH
PDVLPILEEYKQDPVVEVAETCAIALDRVRWLQSGQKVDDSNPYASVDPS
PPTAGDKSVTELKAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIAEGLK
DSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEALGAI
ATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAKLDA
TK*
BS03854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nero-PA | 302 | CG2245-PA | 1..302 | 1..302 | 1535 | 100 | Plus |
