Clone Sequence Records
BS03856.3prime Sequence
890 bp (787 high quality bases) assembled on 2005-12-01
> BS03856.3prime
ATGGTCTAGAAAGCTTCTAGCAGCCGATCGTGTTGGCATTGATGAACTGC
ACGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGC
GTGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGG
CATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGC
AGCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGAT
CGCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCG
GTGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAG
GCCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCAC
CAGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGC
ACAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACC
GGCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTG
GCTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGC
ACTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAG
CCTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAAG
GTGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCT
GCGAATCACCTGTATGGGAATTCTTTCCAAAACCCGCCTTGGGCACTGCC
TCGTTTTCGCTGATTAGATGCACCTTCCTGCCGCGCTCCACGAAATGATC
CCGTAGCTGGCGGGCACGTGTGCTCTTTTCGCTGGCTGGC
BS03856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 27..900 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 107..980 | 890..17 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 653..304 | 1750 | 100 | Minus |
X | 23542271 | X | 1941124..1941411 | 304..17 | 1440 | 100 | Minus |
X | 23542271 | X | 1940413..1940652 | 890..651 | 1185 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:20:36 has no hits.
BS03856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:26 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 27..900 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:38 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 27..900 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:07 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 178..1055 | 12..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:46 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 107..984 | 12..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:46 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1940413..1940651 | 652..890 | 99 | -> | Minus |
X | 1940710..1941056 | 305..651 | 100 | -> | Minus |
X | 1941124..1941415 | 12..304 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:07 Download gff for
BS03856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834446..1834684 | 652..890 | 99 | -> | Minus |
arm_X | 1834743..1835089 | 305..651 | 100 | -> | Minus |
arm_X | 1835157..1835448 | 12..304 | 99 | | Minus |
BS03856.5prime Sequence
921 bp (806 high quality bases) assembled on 2005-12-01
> BS03856.5prime
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAAGTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCGGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAC
ACGATCGGCTGCTAAAAGCTT
BS03856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 1..883 | 17..899 | 4340 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 80..979 | 16..914 | 4430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 280..629 | 1750 | 100 | Plus |
X | 23542271 | X | 1941124..1941410 | 629..914 | 1340 | 98.6 | Plus |
X | 23542271 | X | 1940386..1940652 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:57 has no hits.
BS03856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:27 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:40 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:52:43 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1055 | 16..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:28 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 80..984 | 16..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:28 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1941124..1941415 | 629..921 | 97 | | Plus |
X | 1940386..1940651 | 16..281 | 100 | -> | Plus |
X | 1940710..1941056 | 282..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:52:43 Download gff for
BS03856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834419..1834684 | 16..281 | 100 | -> | Plus |
arm_X | 1834743..1835089 | 282..628 | 100 | -> | Plus |
arm_X | 1835157..1835448 | 629..921 | 97 | | Plus |
BS03856.complete Sequence
932 bp (932 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634796
> BS03856.complete
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCTAGAAGCTTTCTAGACCAT
BS03856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 900 | CG3587-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 80..980 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 280..629 | 1750 | 100 | Plus |
X | 23542271 | X | 1941124..1941411 | 629..916 | 1440 | 100 | Plus |
X | 23542271 | X | 1940386..1940652 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:20 has no hits.
BS03856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:28 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:33 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1055 | 16..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:01 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 152..1051 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:28 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..1055 | 16..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:54 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 81..980 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:54 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1941124..1941411 | 629..916 | 100 | | Plus |
X | 1940387..1940651 | 17..281 | 100 | -> | Plus |
X | 1940710..1941056 | 282..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:01 Download gff for
BS03856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834420..1834684 | 17..281 | 100 | -> | Plus |
arm_X | 1834743..1835089 | 282..628 | 100 | -> | Plus |
arm_X | 1835157..1835444 | 629..916 | 100 | | Plus |
BS03856.pep Sequence
Translation from 16 to 915
> BS03856.pep
MPLVVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAGFGKNS
HTGDSQKEKVVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKV
SRTTQCTVFTCIPQEEAWTFNSQRTAPDELPGDSERVQPVDNSDVPYTRE
TFDALCQRYEEPQSNNRWDSPLVVVLPKDTLDMEAIYKALYESQPLPPNQ
STYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQLRIPGSRNPVKV
ATSMNALQLNRLRQKFITSTCHASQTSPTPLEQVPHLFVQFINANTIGC*
BS03856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 299 | CG3587-PA | 1..299 | 1..299 | 1559 | 100 | Plus |