Clone BS03856 Report

Search the DGRC for BS03856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG3587-RA
Protein status:BS03856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03856.3prime Sequence

890 bp (787 high quality bases) assembled on 2005-12-01

> BS03856.3prime
ATGGTCTAGAAAGCTTCTAGCAGCCGATCGTGTTGGCATTGATGAACTGC
ACGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGC
GTGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGG
CATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGC
AGCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGAT
CGCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCG
GTGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAG
GCCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCAC
CAGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGC
ACAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACC
GGCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTG
GCTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGC
ACTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAG
CCTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAAG
GTGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCT
GCGAATCACCTGTATGGGAATTCTTTCCAAAACCCGCCTTGGGCACTGCC
TCGTTTTCGCTGATTAGATGCACCTTCCTGCCGCGCTCCACGAAATGATC
CCGTAGCTGGCGGGCACGTGTGCTCTTTTCGCTGGCTGGC

BS03856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 27..900 890..17 4345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 107..980 890..17 4355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 653..304 1750 100 Minus
X 23542271 X 1941124..1941411 304..17 1440 100 Minus
X 23542271 X 1940413..1940652 890..651 1185 99.6 Minus
Blast to na_te.dros performed on 2015-02-02 19:20:36 has no hits.

BS03856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:26 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 27..900 17..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:38 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 27..900 17..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:07 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 178..1055 12..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:46 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 107..984 12..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:46 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1940413..1940651 652..890 99 -> Minus
X 1940710..1941056 305..651 100 -> Minus
X 1941124..1941415 12..304 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:07 Download gff for BS03856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834446..1834684 652..890 99 -> Minus
arm_X 1834743..1835089 305..651 100 -> Minus
arm_X 1835157..1835448 12..304 99   Minus

BS03856.5prime Sequence

921 bp (806 high quality bases) assembled on 2005-12-01

> BS03856.5prime
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAAGTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCGGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAC
ACGATCGGCTGCTAAAAGCTT

BS03856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 1..883 17..899 4340 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 80..979 16..914 4430 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 280..629 1750 100 Plus
X 23542271 X 1941124..1941410 629..914 1340 98.6 Plus
X 23542271 X 1940386..1940652 16..282 1335 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:57 has no hits.

BS03856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:27 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 1..900 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:40 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 1..900 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:52:43 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1055 16..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:28 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 80..984 16..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:28 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1941124..1941415 629..921 97   Plus
X 1940386..1940651 16..281 100 -> Plus
X 1940710..1941056 282..628 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:52:43 Download gff for BS03856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834419..1834684 16..281 100 -> Plus
arm_X 1834743..1835089 282..628 100 -> Plus
arm_X 1835157..1835448 629..921 97   Plus

BS03856.complete Sequence

932 bp (932 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634796

> BS03856.complete
GAAGTTATCAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCA
GCGGAAAGAGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGC
GGCAGGAAGGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGG
TTTTGGAAAGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTAC
GTAGCGATCTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTG
GTCATCTTGGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTA
CTGCATGTCCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCA
TACCCCAGGAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGAT
GAACTGCCTGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGT
TCCCTACACCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGC
CGCAGAGCAACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAG
GACACGCTCGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCC
ACTGCCACCCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACT
ACCTGTTCGAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTC
GGCGCCGTCAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAG
AAATCCCGTGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCC
TGCGCCAGAAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCC
ACTCCGCTGGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAA
CACGATCGGCTGCTAGAAGCTTTCTAGACCAT

BS03856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 900 CG3587-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 80..980 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 280..629 1750 100 Plus
X 23542271 X 1941124..1941411 629..916 1440 100 Plus
X 23542271 X 1940386..1940652 16..282 1335 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:20 has no hits.

BS03856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:28 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:33 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1055 16..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:01 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 152..1051 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:28 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..1055 16..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:54 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 81..980 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:54 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
X 1941124..1941411 629..916 100   Plus
X 1940387..1940651 17..281 100 -> Plus
X 1940710..1941056 282..628 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:01 Download gff for BS03856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834420..1834684 17..281 100 -> Plus
arm_X 1834743..1835089 282..628 100 -> Plus
arm_X 1835157..1835444 629..916 100   Plus

BS03856.pep Sequence

Translation from 16 to 915

> BS03856.pep
MPLVVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAGFGKNS
HTGDSQKEKVVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKV
SRTTQCTVFTCIPQEEAWTFNSQRTAPDELPGDSERVQPVDNSDVPYTRE
TFDALCQRYEEPQSNNRWDSPLVVVLPKDTLDMEAIYKALYESQPLPPNQ
STYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQLRIPGSRNPVKV
ATSMNALQLNRLRQKFITSTCHASQTSPTPLEQVPHLFVQFINANTIGC*

BS03856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 299 CG3587-PA 1..299 1..299 1559 100 Plus