Clone BS03857 Report

Search the DGRC for BS03857

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)205-RA
Protein status:BS03857.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03857.3prime Sequence

651 bp (650 high quality bases) assembled on 2005-12-01

> BS03857.3prime
ATGGTCTAGAAAGCTTTTAATCTTCATTATCAGAGTACCAGGATAGGCGC
TCTTCGTAGAAGTGGATTACCATTCGTGGGATTTTTTCATTGGCCACTGA
GGAGGGCACCATTTCTGCTTGGTCCACGCCTTTGAACTGAATGAGGAATG
TCAGGCGGCCATTATTGTCGGAGGCACCCAAGATCTTTTCGGCCTCCAGG
CCGCGATCGAATCCGGTAGATCCTGAAACGGGAATGGTGTCCTGCTCCGC
ATCTGTGGTACGTTTTGATTTATTGCCAGAGGGCGCTGTTGGTTCTTCGG
ACTTTCGCTTGCTTGCTGTGGACGTCGAACTGCTGGCGCGTCCTTGAGTT
TCCTTGGCCTTGGCGCTGCTGCTGGGTCGATCCTTCTTGGAGGCGGCTGA
CTTCTCCTCATCCTTGCGGCTCGCCTCGTACTGCTGGATAAGATCCTGGC
AGTCGAGATTGTTCTCCGGCTCCCACGTGTTCTCAGTTTCGGGATAGCCC
TTCCATTTCAGATAGTACTCCACCTTTCCCTTGCGCACCCGCCTGTCGAT
GATCTTTTCCACGGCGTACTCCTCCTCCTCCTCTTCGGCATCGGAAACCT
TTGCCGAGCTCTCAGGGTTGTCGATTTTCTTGCCCATGTCGACTGATAAC
T

BS03857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8409-PA 621 Su(var)205-RA 1..621 637..17 3105 100 Minus
CG8409-PB 621 Su(var)205-RB 1..621 637..17 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-RB 1109 CG8409-RB 280..901 637..16 3110 100 Minus
Su(var)205-RA 992 CG8409-RA 163..784 637..16 3110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8209834..8210105 16..287 1360 100 Plus
2L 23513712 2L 8210353..8210475 286..408 615 100 Plus
2L 23513712 2L 8210549..8210668 406..525 600 100 Plus
2L 23513712 2L 8210727..8210843 521..637 585 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:33:23 has no hits.

BS03857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:28 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8409-PB 1..621 17..637 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:41 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8409-PB 1..621 17..637 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:54:06 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..789 11..637 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:48 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..789 11..637 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:48 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8210730..8210843 524..637 100   Plus
2L 8210550..8210666 407..523 100 <- Plus
2L 8210353..8210473 286..406 100 <- Plus
2L 8209829..8210103 11..285 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:54:06 Download gff for BS03857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8210730..8210843 524..637 100   Plus
arm_2L 8210353..8210473 286..406 100 <- Plus
arm_2L 8210550..8210666 407..523 100 <- Plus
arm_2L 8209829..8210103 11..285 99 <- Plus

BS03857.5prime Sequence

651 bp (650 high quality bases) assembled on 2005-11-29

> BS03857.5prime
GAAGTTATCAGTCGACATGGGCAAGAAAATCGACAACCCTGAGAGCTCGG
CAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCCGTGGAAAAG
ATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTATCTGAAATG
GAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGAACAATCTCG
ACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAGGATGAGGAG
AAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGCCAAGGCCAA
GGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAAGCAAGCGAA
AGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAACGTACCACA
GATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGGATTCGATCG
CGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATAATGGCCGCC
TGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAAATGGTGCCC
TCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGA
AGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAAAGCTTTCTAGAC
C

BS03857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8409-PA 621 Su(var)205-RA 1..621 17..637 3105 100 Plus
CG8409-PB 621 Su(var)205-RB 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-RB 1109 CG8409-RB 280..901 17..638 3110 100 Plus
Su(var)205-RA 992 CG8409-RA 163..784 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8209834..8210105 638..367 1360 100 Minus
2L 23513712 2L 8210353..8210475 368..246 615 100 Minus
2L 23513712 2L 8210549..8210668 248..129 600 100 Minus
2L 23513712 2L 8210727..8210843 133..17 585 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:08:35 has no hits.

BS03857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:29 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8409-PB 1..621 17..637 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:42 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8409-PB 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:42 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..789 17..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:22 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..789 17..643 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:22 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8209829..8210103 369..643 99 <- Minus
2L 8210353..8210473 248..368 100 <- Minus
2L 8210550..8210666 131..247 100 <- Minus
2L 8210730..8210843 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:42 Download gff for BS03857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8209829..8210103 369..643 99 <- Minus
arm_2L 8210353..8210473 248..368 100 <- Minus
arm_2L 8210550..8210666 131..247 100 <- Minus
arm_2L 8210730..8210843 17..130 100   Minus

BS03857.complete Sequence

653 bp (653 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634797

> BS03857.complete
GAAGTTATCAGTCGACATGGGCAAGAAAATCGACAACCCTGAGAGCTCGG
CAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCCGTGGAAAAG
ATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTATCTGAAATG
GAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGAACAATCTCG
ACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAGGATGAGGAG
AAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGCCAAGGCCAA
GGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAAGCAAGCGAA
AGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAACGTACCACA
GATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGGATTCGATCG
CGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATAATGGCCGCC
TGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAAATGGTGCCC
TCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGA
AGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAAAGCTTTCTAGAC
CAT

BS03857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-RB 621 CG8409-PB 1..621 17..637 3105 100 Plus
Su(var)205-RA 621 CG8409-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-RB 1109 CG8409-RB 280..901 17..638 3110 100 Plus
Su(var)205-RA 992 CG8409-RA 163..784 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8209834..8210105 638..367 1360 100 Minus
2L 23513712 2L 8210353..8210475 368..246 615 100 Minus
2L 23513712 2L 8210549..8210668 248..129 600 100 Minus
2L 23513712 2L 8210727..8210843 133..17 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:01:09 has no hits.

BS03857.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:29 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:15 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 78..704 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:44 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..781 17..635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:29 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 78..704 17..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:57 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 163..781 17..635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:57 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8209837..8210103 369..635 100 <- Minus
2L 8210353..8210473 248..368 100 <- Minus
2L 8210550..8210666 131..247 100 <- Minus
2L 8210730..8210843 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:44 Download gff for BS03857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8209837..8210103 369..635 100 <- Minus
arm_2L 8210353..8210473 248..368 100 <- Minus
arm_2L 8210550..8210666 131..247 100 <- Minus
arm_2L 8210730..8210843 17..130 100   Minus

BS03857.pep Sequence

Translation from 16 to 636

> BS03857.pep
MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE
TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR
ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE
KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW
YSDNED*

BS03857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-PB 206 CG8409-PB 1..206 1..206 1059 100 Plus
Su(var)205-PA 206 CG8409-PA 1..206 1..206 1059 100 Plus
HP1b-PB 240 CG7041-PB 3..154 23..202 395 44.4 Plus
HP1b-PC 240 CG7041-PC 3..154 23..202 395 44.4 Plus
HP1b-PA 240 CG7041-PA 3..154 23..202 395 44.4 Plus