Clone Sequence Records
BS03857.3prime Sequence
651 bp (650 high quality bases) assembled on 2005-12-01
> BS03857.3prime
ATGGTCTAGAAAGCTTTTAATCTTCATTATCAGAGTACCAGGATAGGCGC
TCTTCGTAGAAGTGGATTACCATTCGTGGGATTTTTTCATTGGCCACTGA
GGAGGGCACCATTTCTGCTTGGTCCACGCCTTTGAACTGAATGAGGAATG
TCAGGCGGCCATTATTGTCGGAGGCACCCAAGATCTTTTCGGCCTCCAGG
CCGCGATCGAATCCGGTAGATCCTGAAACGGGAATGGTGTCCTGCTCCGC
ATCTGTGGTACGTTTTGATTTATTGCCAGAGGGCGCTGTTGGTTCTTCGG
ACTTTCGCTTGCTTGCTGTGGACGTCGAACTGCTGGCGCGTCCTTGAGTT
TCCTTGGCCTTGGCGCTGCTGCTGGGTCGATCCTTCTTGGAGGCGGCTGA
CTTCTCCTCATCCTTGCGGCTCGCCTCGTACTGCTGGATAAGATCCTGGC
AGTCGAGATTGTTCTCCGGCTCCCACGTGTTCTCAGTTTCGGGATAGCCC
TTCCATTTCAGATAGTACTCCACCTTTCCCTTGCGCACCCGCCTGTCGAT
GATCTTTTCCACGGCGTACTCCTCCTCCTCCTCTTCGGCATCGGAAACCT
TTGCCGAGCTCTCAGGGTTGTCGATTTTCTTGCCCATGTCGACTGATAAC
T
BS03857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8409-PA | 621 | Su(var)205-RA | 1..621 | 637..17 | 3105 | 100 | Minus |
CG8409-PB | 621 | Su(var)205-RB | 1..621 | 637..17 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)205-RB | 1109 | CG8409-RB | 280..901 | 637..16 | 3110 | 100 | Minus |
Su(var)205-RA | 992 | CG8409-RA | 163..784 | 637..16 | 3110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8209834..8210105 | 16..287 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 8210353..8210475 | 286..408 | 615 | 100 | Plus |
2L | 23513712 | 2L | 8210549..8210668 | 406..525 | 600 | 100 | Plus |
2L | 23513712 | 2L | 8210727..8210843 | 521..637 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:33:23 has no hits.
BS03857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:28 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8409-PB | 1..621 | 17..637 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:41 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8409-PB | 1..621 | 17..637 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:54:06 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..789 | 11..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:48 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..789 | 11..637 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:48 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8210730..8210843 | 524..637 | 100 | | Plus |
2L | 8210550..8210666 | 407..523 | 100 | <- | Plus |
2L | 8210353..8210473 | 286..406 | 100 | <- | Plus |
2L | 8209829..8210103 | 11..285 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:54:06 Download gff for
BS03857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8210730..8210843 | 524..637 | 100 | | Plus |
arm_2L | 8210353..8210473 | 286..406 | 100 | <- | Plus |
arm_2L | 8210550..8210666 | 407..523 | 100 | <- | Plus |
arm_2L | 8209829..8210103 | 11..285 | 99 | <- | Plus |
BS03857.5prime Sequence
651 bp (650 high quality bases) assembled on 2005-11-29
> BS03857.5prime
GAAGTTATCAGTCGACATGGGCAAGAAAATCGACAACCCTGAGAGCTCGG
CAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCCGTGGAAAAG
ATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTATCTGAAATG
GAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGAACAATCTCG
ACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAGGATGAGGAG
AAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGCCAAGGCCAA
GGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAAGCAAGCGAA
AGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAACGTACCACA
GATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGGATTCGATCG
CGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATAATGGCCGCC
TGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAAATGGTGCCC
TCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGA
AGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAAAGCTTTCTAGAC
C
BS03857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8409-PA | 621 | Su(var)205-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG8409-PB | 621 | Su(var)205-RB | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)205-RB | 1109 | CG8409-RB | 280..901 | 17..638 | 3110 | 100 | Plus |
Su(var)205-RA | 992 | CG8409-RA | 163..784 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8209834..8210105 | 638..367 | 1360 | 100 | Minus |
2L | 23513712 | 2L | 8210353..8210475 | 368..246 | 615 | 100 | Minus |
2L | 23513712 | 2L | 8210549..8210668 | 248..129 | 600 | 100 | Minus |
2L | 23513712 | 2L | 8210727..8210843 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:08:35 has no hits.
BS03857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:29 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8409-PB | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:42 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8409-PB | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:42 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..789 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:22 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..789 | 17..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:22 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8209829..8210103 | 369..643 | 99 | <- | Minus |
2L | 8210353..8210473 | 248..368 | 100 | <- | Minus |
2L | 8210550..8210666 | 131..247 | 100 | <- | Minus |
2L | 8210730..8210843 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:42 Download gff for
BS03857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8209829..8210103 | 369..643 | 99 | <- | Minus |
arm_2L | 8210353..8210473 | 248..368 | 100 | <- | Minus |
arm_2L | 8210550..8210666 | 131..247 | 100 | <- | Minus |
arm_2L | 8210730..8210843 | 17..130 | 100 | | Minus |
BS03857.complete Sequence
653 bp (653 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634797
> BS03857.complete
GAAGTTATCAGTCGACATGGGCAAGAAAATCGACAACCCTGAGAGCTCGG
CAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCCGTGGAAAAG
ATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTATCTGAAATG
GAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGAACAATCTCG
ACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAGGATGAGGAG
AAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGCCAAGGCCAA
GGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAAGCAAGCGAA
AGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAACGTACCACA
GATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGGATTCGATCG
CGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATAATGGCCGCC
TGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAAATGGTGCCC
TCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGA
AGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAAAGCTTTCTAGAC
CAT
BS03857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)205-RB | 621 | CG8409-PB | 1..621 | 17..637 | 3105 | 100 | Plus |
Su(var)205-RA | 621 | CG8409-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)205-RB | 1109 | CG8409-RB | 280..901 | 17..638 | 3110 | 100 | Plus |
Su(var)205-RA | 992 | CG8409-RA | 163..784 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8209834..8210105 | 638..367 | 1360 | 100 | Minus |
2L | 23513712 | 2L | 8210353..8210475 | 368..246 | 615 | 100 | Minus |
2L | 23513712 | 2L | 8210549..8210668 | 248..129 | 600 | 100 | Minus |
2L | 23513712 | 2L | 8210727..8210843 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:01:09 has no hits.
BS03857.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:29 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RB | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:15 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RB | 78..704 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:44 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..781 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:29 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RB | 78..704 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:57 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)205-RA | 163..781 | 17..635 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:57 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8209837..8210103 | 369..635 | 100 | <- | Minus |
2L | 8210353..8210473 | 248..368 | 100 | <- | Minus |
2L | 8210550..8210666 | 131..247 | 100 | <- | Minus |
2L | 8210730..8210843 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:44 Download gff for
BS03857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8209837..8210103 | 369..635 | 100 | <- | Minus |
arm_2L | 8210353..8210473 | 248..368 | 100 | <- | Minus |
arm_2L | 8210550..8210666 | 131..247 | 100 | <- | Minus |
arm_2L | 8210730..8210843 | 17..130 | 100 | | Minus |
BS03857.pep Sequence
Translation from 16 to 636
> BS03857.pep
MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE
TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR
ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE
KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW
YSDNED*
BS03857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)205-PB | 206 | CG8409-PB | 1..206 | 1..206 | 1059 | 100 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 1..206 | 1..206 | 1059 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PC | 240 | CG7041-PC | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PA | 240 | CG7041-PA | 3..154 | 23..202 | 395 | 44.4 | Plus |