Clone Sequence Records
BS03859.3prime Sequence
882 bp (853 high quality bases) assembled on 2005-12-01
> BS03859.3prime
ATGGTCTAGAAAGCTTTCAATCCTGATCCCCTTCCTCCGGTTCATCAAAG
TCCTTAACGTTCACGTCTGCATCCTCGCCGTACTGCAAGATACTGTCAAT
TTGTAGCAGAAGATCGCCCACGCTCTCCTCGTCCTGGGAATCCAACGGGA
AAAATCTCACCAAACTGAAATCCTCAATTAGCGCGCCAATAGCCTGCGTA
AGCTTTGCGTATTTCTCGCCAAAACCAGTCCCGATGGTCAGCTCGCCCAT
CAGACTGTGGGCATCCGGTTCCAGGTACATCTCCAGCTGTTTCCGCGCAT
CGCTGCTCAGCAGATCCACTTTGGTCAGCACATTGATGTGCGGCTGCTCC
ATGTTGGCCATCACACTGAGCGCGGCCATGGTGCCGGAAATGAACTTGGC
CCCGTCCACCATGAACTGCGAGTCCAAGCAGAAGACGACGCATGTGCGGA
AGTTCCAGGACTCGAGCAGTTCCACCAGCTGTCTGCCCATCTTTAGGTGA
GTGAAGAGCTCGATCTGGCCGGGCATGTCGAACAGGATGTAGTCATCATC
CGGCTCGCCCACCATCAGCTCGTTCTCGCCGCCGCAGAGCTGTTCCTTCA
GCCATTCCTGGTTCTCGATCAAGAACTCCAGGCAGAAGATGAGGCCGCCG
TTCGGTCCGTAGTGCAGCTCTTCGTCCTCCATGGCATCGTCCAGGTGGAT
TAGATCGCGAATGTCCGTCAGCGGGTTGTAGGTGAAGTGCTCTGCCGCCG
GATCGAGGTTCACCACCTGAACATTTCTCTTGCAGTCCATCGCATATTGC
TGCATTAAGCTGCAGTACGTCGACTTGCCACTGCCTGCCGGGCCCACAAT
TATTTGGGCAAACCGCATGTCGACTGATAACT
BS03859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-PA | 852 | CG2656-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 1016 | CG2656-RA | 92..946 | 869..15 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7144921..7145581 | 825..165 | 3305 | 100 | Minus |
| 3R | 32079331 | 3R | 7151048..7151200 | 167..15 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 7144815..7144860 | 869..824 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:24:13 has no hits.
BS03859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:32 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:47 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:45 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 85..952 | 9..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:38 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 85..952 | 9..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:38 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7144808..7144860 | 824..877 | 92 | -> | Minus |
| 3R | 7144923..7145581 | 165..823 | 100 | -> | Minus |
| 3R | 7151051..7151206 | 9..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:45 Download gff for
BS03859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2970530..2970582 | 824..877 | 92 | -> | Minus |
| arm_3R | 2970645..2971303 | 165..823 | 100 | -> | Minus |
| arm_3R | 2976773..2976928 | 9..164 | 97 | | Minus |
BS03859.5prime Sequence
852 bp (846 high quality bases) assembled on 2005-12-01
> BS03859.5prime
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGC
AGTACGGCGAGGATGCAGACGTGAACGTTAAGGACTTTGATGAACCGGAG
GA
BS03859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-PA | 852 | CG2656-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 1016 | CG2656-RA | 92..928 | 16..852 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7144921..7145581 | 60..720 | 3305 | 100 | Plus |
| 3R | 32079331 | 3R | 7151048..7151182 | 718..852 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 7144815..7144860 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:04:37 has no hits.
BS03859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:33 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:48 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:27:06 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 85..927 | 8..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:35:48 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 85..927 | 8..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:35:48 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7144808..7144860 | 8..61 | 92 | -> | Plus |
| 3R | 7144923..7145581 | 62..720 | 100 | -> | Plus |
| 3R | 7151051..7151181 | 721..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:27:06 Download gff for
BS03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2970530..2970582 | 8..61 | 92 | -> | Plus |
| arm_3R | 2970645..2971303 | 62..720 | 100 | -> | Plus |
| arm_3R | 2976773..2976903 | 721..851 | 100 | | Plus |
BS03859.complete Sequence
884 bp (884 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634798
> BS03859.complete
GAAGTTATCAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAG
GCAGTGGCAAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGAC
TGCAAGAGAAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTT
CACCTACAACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATG
CCATGGAGGACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTC
TGCCTGGAGTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTG
CGGCGGCGAGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCC
TGTTCGACATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGC
AGACAGCTGGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGT
CTTCTGCTTGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCG
GCACCATGGCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATC
AATGTGCTGACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCT
GGAGATGTACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCA
TCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGC
GCGCTAATTGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCA
GGACGAGGAGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGC
AGTACGGCGAGGATGCAGACGTGAACGTTAAGGACTTTGATGAACCGGAG
GAAGGGGATCAGGATTGAAAGCTTTCTAGACCAT
BS03859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 852 | CG2656-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 1016 | CG2656-RA | 92..946 | 16..870 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7144921..7145581 | 60..720 | 3305 | 100 | Plus |
| 3R | 32079331 | 3R | 7151048..7151200 | 718..870 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 7144815..7144860 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:52:30 has no hits.
BS03859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:30 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:17 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 66..933 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:33 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 93..943 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:30 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 66..933 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:52 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 93..943 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:52 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7144816..7144860 | 17..61 | 100 | -> | Plus |
| 3R | 7144923..7145581 | 62..720 | 100 | -> | Plus |
| 3R | 7151051..7151197 | 721..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:33 Download gff for
BS03859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2970538..2970582 | 17..61 | 100 | -> | Plus |
| arm_3R | 2970645..2971303 | 62..720 | 100 | -> | Plus |
| arm_3R | 2976773..2976919 | 721..867 | 100 | | Plus |
BS03859.pep Sequence
Translation from 16 to 867
> BS03859.pep
MRFAQIIVGPAGSGKSTYCSLMQQYAMDCKRNVQVVNLDPAAEHFTYNPL
TDIRDLIHLDDAMEDEELHYGPNGGLIFCLEFLIENQEWLKEQLCGGENE
LMVGEPDDDYILFDMPGQIELFTHLKMGRQLVELLESWNFRTCVVFCLDS
QFMVDGAKFISGTMAALSVMANMEQPHINVLTKVDLLSSDARKQLEMYLE
PDAHSLMGELTIGTGFGEKYAKLTQAIGALIEDFSLVRFFPLDSQDEESV
GDLLLQIDSILQYGEDADVNVKDFDEPEEGDQD*
BS03859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-PA | 283 | CG2656-PA | 1..283 | 1..283 | 1482 | 100 | Plus |
| CG10222-PB | 307 | CG10222-PB | 15..282 | 2..270 | 399 | 36.7 | Plus |
| CG10222-PA | 307 | CG10222-PA | 15..282 | 2..270 | 399 | 36.7 | Plus |
| CG3704-PA | 382 | CG3704-PA | 27..228 | 6..211 | 215 | 30.7 | Plus |
