Clone Sequence Records
BS03860.3prime Sequence
387 bp (386 high quality bases) assembled on 2005-12-01
> BS03860.3prime
ATGGTCTAGAAAGCTTTCAGCCGCAGCATCCTCCGGCATTGCAGGATTGG
GAGGGGGGCGGAATGCGCCCAATTCGTCGATTAGGCCTTAATCCACCTCC
GCGATAACCGCTACCGCCTCCGCCTCCGCCACCGCCTCCGCCGCCACCGC
CTCCGCCGCCACCACCACCGCCCCCTCCGCCCCAGCTACTACTTCCCCAT
CCATTTCCTCGACGGGAGTTATCTCCGTTGCTATCATTTCCAGTGAATGG
AGACAGGAACGATGCAAGCAACTGTTTGACGGCGAACCATATACCCACGA
ATGTGTCCAAAACTCGTCTCAAGTCCCATGGACGTTTCTCCCACAGACGA
CCATTTTGATCGACGTACGCCATGTCGACTGATAACT
BS03860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 357 | CG1840-RA | 1..357 | 373..17 | 1785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..501 | 373..17 | 1785 | 100 | Minus |
CG1840-RB | 716 | CG1840-RB | 145..498 | 373..17 | 1730 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888968 | 269..17 | 1265 | 100 | Minus |
X | 23542271 | X | 11888572..11888657 | 354..269 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:19:22 has no hits.
BS03860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:34 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:50 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:52 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 8..373 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:30 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 8..373 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:30 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 355..373 | 100 | -> | Minus |
X | 11888572..11888656 | 270..354 | 100 | -> | Minus |
X | 11888716..11888974 | 8..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:52 Download gff for
BS03860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 355..373 | 100 | -> | Minus |
arm_X | 11782605..11782689 | 270..354 | 100 | -> | Minus |
arm_X | 11782749..11783007 | 8..269 | 98 | | Minus |
BS03860.5prime Sequence
387 bp (386 high quality bases) assembled on 2005-12-01
> BS03860.5prime
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCTGAAAGCTTTCTAGACC
BS03860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 357 | CG1840-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..501 | 17..373 | 1785 | 100 | Plus |
CG1840-RB | 716 | CG1840-RB | 145..498 | 17..373 | 1730 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888968 | 121..373 | 1265 | 100 | Plus |
X | 23542271 | X | 11888572..11888657 | 36..121 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:15:00 has no hits.
BS03860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:35 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:51 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-PA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:12:25 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 17..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:23 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..507 | 17..382 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:23 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 17..35 | 100 | -> | Plus |
X | 11888572..11888656 | 36..120 | 100 | -> | Plus |
X | 11888716..11888974 | 121..382 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:12:25 Download gff for
BS03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 17..35 | 100 | -> | Plus |
arm_X | 11782605..11782689 | 36..120 | 100 | -> | Plus |
arm_X | 11782749..11783007 | 121..382 | 98 | | Plus |
BS03860.complete Sequence
389 bp (389 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634799
> BS03860.complete
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCTGAAAGCTTTCTAGACCAT
BS03860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 357 | CG1840-PA | 1..357 | 17..373 | 1785 | 100 | Plus |
CG1840-RB | 354 | CG1840-PB | 1..354 | 17..373 | 1705 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-RA | 719 | CG1840-RA | 145..501 | 17..373 | 1785 | 100 | Plus |
CG1840-RB | 716 | CG1840-RB | 145..498 | 17..373 | 1705 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11888716..11888968 | 121..373 | 1265 | 100 | Plus |
X | 23542271 | X | 11888572..11888657 | 36..121 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:28:34 has no hits.
BS03860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:31 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:18 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 139..501 | 17..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:02 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..500 | 17..372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:32 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 139..501 | 17..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:15 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1840-RA | 145..500 | 17..372 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:15 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11888496..11888514 | 17..35 | 100 | -> | Plus |
X | 11888572..11888656 | 36..120 | 100 | -> | Plus |
X | 11888716..11888967 | 121..372 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:02 Download gff for
BS03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11782529..11782547 | 17..35 | 100 | -> | Plus |
arm_X | 11782605..11782689 | 36..120 | 100 | -> | Plus |
arm_X | 11782749..11783000 | 121..372 | 100 | | Plus |
BS03860.pep Sequence
Translation from 16 to 372
> BS03860.pep
MAYVDQNGRLWEKRPWDLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNG
DNSRRGNGWGSSSWGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRR
IGRIPPPSQSCNAGGCCG*
BS03860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1840-PA | 118 | CG1840-PA | 1..118 | 1..118 | 674 | 100 | Plus |
CG1840-PB | 117 | CG1840-PB | 1..117 | 1..118 | 658 | 99.2 | Plus |
SelG-PA | 110 | CG1844-PA | 1..110 | 1..118 | 389 | 63.6 | Plus |
caz-PD | 355 | CG3606-PD | 145..207 | 43..94 | 159 | 54 | Plus |
caz-PC | 384 | CG3606-PC | 174..236 | 43..94 | 159 | 54 | Plus |
caz-PD | 355 | CG3606-PD | 164..240 | 46..116 | 147 | 45.5 | Plus |
caz-PD | 355 | CG3606-PD | 169..230 | 45..97 | 145 | 51.6 | Plus |