Clone BS03860 Report

Search the DGRC for BS03860

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1840-RA
Protein status:BS03860.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03860.3prime Sequence

387 bp (386 high quality bases) assembled on 2005-12-01

> BS03860.3prime
ATGGTCTAGAAAGCTTTCAGCCGCAGCATCCTCCGGCATTGCAGGATTGG
GAGGGGGGCGGAATGCGCCCAATTCGTCGATTAGGCCTTAATCCACCTCC
GCGATAACCGCTACCGCCTCCGCCTCCGCCACCGCCTCCGCCGCCACCGC
CTCCGCCGCCACCACCACCGCCCCCTCCGCCCCAGCTACTACTTCCCCAT
CCATTTCCTCGACGGGAGTTATCTCCGTTGCTATCATTTCCAGTGAATGG
AGACAGGAACGATGCAAGCAACTGTTTGACGGCGAACCATATACCCACGA
ATGTGTCCAAAACTCGTCTCAAGTCCCATGGACGTTTCTCCCACAGACGA
CCATTTTGATCGACGTACGCCATGTCGACTGATAACT

BS03860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 357 CG1840-RA 1..357 373..17 1785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..501 373..17 1785 100 Minus
CG1840-RB 716 CG1840-RB 145..498 373..17 1730 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888968 269..17 1265 100 Minus
X 23542271 X 11888572..11888657 354..269 430 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:19:22 has no hits.

BS03860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:34 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:50 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:52 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 8..373 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:30 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 8..373 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:30 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 355..373 100 -> Minus
X 11888572..11888656 270..354 100 -> Minus
X 11888716..11888974 8..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:52 Download gff for BS03860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 355..373 100 -> Minus
arm_X 11782605..11782689 270..354 100 -> Minus
arm_X 11782749..11783007 8..269 98   Minus

BS03860.5prime Sequence

387 bp (386 high quality bases) assembled on 2005-12-01

> BS03860.5prime
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCTGAAAGCTTTCTAGACC

BS03860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 357 CG1840-RA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..501 17..373 1785 100 Plus
CG1840-RB 716 CG1840-RB 145..498 17..373 1730 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888968 121..373 1265 100 Plus
X 23542271 X 11888572..11888657 36..121 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:15:00 has no hits.

BS03860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:35 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:51 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-PA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:12:25 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 17..382 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:23 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..507 17..382 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:23 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 17..35 100 -> Plus
X 11888572..11888656 36..120 100 -> Plus
X 11888716..11888974 121..382 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:12:25 Download gff for BS03860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 17..35 100 -> Plus
arm_X 11782605..11782689 36..120 100 -> Plus
arm_X 11782749..11783007 121..382 98   Plus

BS03860.complete Sequence

389 bp (389 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634799

> BS03860.complete
GAAGTTATCAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGG
AGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATA
TGGTTCGCCGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGG
AAATGATAGCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTA
GTAGCTGGGGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGC
GGAGGCGGTGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATT
AAGGCCTAATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCA
ATGCCGGAGGATGCTGCGGCTGAAAGCTTTCTAGACCAT

BS03860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 357 CG1840-PA 1..357 17..373 1785 100 Plus
CG1840-RB 354 CG1840-PB 1..354 17..373 1705 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-RA 719 CG1840-RA 145..501 17..373 1785 100 Plus
CG1840-RB 716 CG1840-RB 145..498 17..373 1705 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11888716..11888968 121..373 1265 100 Plus
X 23542271 X 11888572..11888657 36..121 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:28:34 has no hits.

BS03860.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:31 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:18 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 139..501 17..382 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:02 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..500 17..372 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:32 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 139..501 17..382 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:15 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1840-RA 145..500 17..372 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:15 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
X 11888496..11888514 17..35 100 -> Plus
X 11888572..11888656 36..120 100 -> Plus
X 11888716..11888967 121..372 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:02 Download gff for BS03860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11782529..11782547 17..35 100 -> Plus
arm_X 11782605..11782689 36..120 100 -> Plus
arm_X 11782749..11783000 121..372 100   Plus

BS03860.pep Sequence

Translation from 16 to 372

> BS03860.pep
MAYVDQNGRLWEKRPWDLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNG
DNSRRGNGWGSSSWGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRR
IGRIPPPSQSCNAGGCCG*

BS03860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1840-PA 118 CG1840-PA 1..118 1..118 674 100 Plus
CG1840-PB 117 CG1840-PB 1..117 1..118 658 99.2 Plus
SelG-PA 110 CG1844-PA 1..110 1..118 389 63.6 Plus
caz-PD 355 CG3606-PD 145..207 43..94 159 54 Plus
caz-PC 384 CG3606-PC 174..236 43..94 159 54 Plus
caz-PD 355 CG3606-PD 164..240 46..116 147 45.5 Plus
caz-PD 355 CG3606-PD 169..230 45..97 145 51.6 Plus