Clone Sequence Records
BS03862.3prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-01
> BS03862.3prime
ATGGTCTAGAAAGCTTTTAACACTGTCCATCGGGAGACTCGGTTAGAATG
TGCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATA
GGGTATGGCTCCTGGAGCTGGACATGGTATGGCCACAGTGGCAATCTCTC
GAAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTATGCATCACATAC
CACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAAAGTAGGG
CACTTGACCACCCAGCAATTGCACGATTTTTGTATCCCTCAGCATGAAGA
CCAGTGCCCCCAAACCAATCATTAATAGGAACTCCACAACCAGCCAGGGT
ATGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGC
ACTCAGGGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCT
CCGTGGCGACGGCCAATTGGGCAGCGGTTTGCAGGCGAAGATCGTTGTGA
AAGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGTCCAG
CTCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCA
GGAAAAGGGCGCAGTGGGAGATTAACAACTGGTAGATGCTCGTCAAGAGC
GCCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCA
GCTGCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGC
TGACCGTTGGCAGCAGCATGTCGACTGATAACT
BS03862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1079-PA | 753 | CG1079-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..869 | 769..16 | 3770 | 100 | Minus |
Fie-RA | 1600 | CG1079-RA | 273..1026 | 769..16 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 626..244 | 1915 | 100 | Minus |
3L | 28110227 | 3L | 3892846..3892993 | 769..622 | 725 | 99.3 | Minus |
3L | 28110227 | 3L | 3893978..3894114 | 243..107 | 685 | 100 | Minus |
3L | 28110227 | 3L | 3894169..3894259 | 106..16 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:53:37 has no hits.
BS03862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:36 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:52 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:23 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 16..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:55 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 16..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:55 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3892837..3892989 | 626..780 | 97 | -> | Minus |
3L | 3893533..3893914 | 244..625 | 100 | -> | Minus |
3L | 3893978..3894114 | 107..243 | 100 | -> | Minus |
3L | 3894169..3894259 | 16..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:23 Download gff for
BS03862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3892837..3892989 | 626..780 | 97 | -> | Minus |
arm_3L | 3893533..3893914 | 244..625 | 100 | -> | Minus |
arm_3L | 3893978..3894114 | 107..243 | 100 | -> | Minus |
arm_3L | 3894169..3894259 | 16..106 | 100 | | Minus |
BS03862.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-11-29
> BS03862.5prime
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTTAAAAGCTTTCTAGACC
BS03862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1079-PA | 753 | CG1079-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..869 | 17..770 | 3770 | 100 | Plus |
Fie-RA | 1600 | CG1079-RA | 273..1026 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 160..542 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 3892846..3892993 | 17..164 | 725 | 99.3 | Plus |
3L | 28110227 | 3L | 3893978..3894114 | 543..679 | 685 | 100 | Plus |
3L | 28110227 | 3L | 3894169..3894259 | 680..770 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:19:37 has no hits.
BS03862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:37 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:53 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1079-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:14 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:15 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 6..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:15 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3892842..3892989 | 14..160 | 98 | -> | Plus |
3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
3L | 3894169..3894259 | 680..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:14 Download gff for
BS03862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3892842..3892989 | 14..160 | 98 | -> | Plus |
arm_3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
arm_3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
arm_3L | 3894169..3894259 | 680..770 | 100 | | Plus |
BS03862.complete Sequence
785 bp (785 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634800
> BS03862.complete
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTTAAAAGCTTTCTAGACCAT
BS03862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 753 | CG1079-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
Fie-RA | 753 | CG1079-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-RB | 1443 | CG1079-RB | 116..869 | 17..770 | 3770 | 100 | Plus |
Fie-RA | 1600 | CG1079-RA | 273..1026 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3893532..3893914 | 160..542 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 3892846..3892993 | 17..164 | 725 | 99.3 | Plus |
3L | 28110227 | 3L | 3893978..3894114 | 543..679 | 685 | 100 | Plus |
3L | 28110227 | 3L | 3894169..3894259 | 680..770 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:45 has no hits.
BS03862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:33 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:20 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:36:40 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 273..1023 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:33 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 264..1026 | 6..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:54 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fie-RA | 273..1023 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:54 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
3L | 3894169..3894256 | 680..767 | 100 | | Plus |
3L | 3892846..3892989 | 17..160 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:36:40 Download gff for
BS03862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3893533..3893914 | 161..542 | 100 | -> | Plus |
arm_3L | 3893978..3894114 | 543..679 | 100 | -> | Plus |
arm_3L | 3894169..3894256 | 680..767 | 100 | | Plus |
arm_3L | 3892846..3892989 | 17..160 | 100 | -> | Plus |
BS03862.pep Sequence
Translation from 16 to 768
> BS03862.pep
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
*
BS03862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fie-PB | 250 | CG1079-PB | 1..250 | 1..250 | 1324 | 100 | Plus |
Fie-PA | 250 | CG1079-PA | 1..250 | 1..250 | 1324 | 100 | Plus |