Clone BS03862 Report

Search the DGRC for BS03862

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptFie-RA
Protein status:BS03862.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03862.3prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-01

> BS03862.3prime
ATGGTCTAGAAAGCTTTTAACACTGTCCATCGGGAGACTCGGTTAGAATG
TGCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATA
GGGTATGGCTCCTGGAGCTGGACATGGTATGGCCACAGTGGCAATCTCTC
GAAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTATGCATCACATAC
CACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAAAGTAGGG
CACTTGACCACCCAGCAATTGCACGATTTTTGTATCCCTCAGCATGAAGA
CCAGTGCCCCCAAACCAATCATTAATAGGAACTCCACAACCAGCCAGGGT
ATGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGC
ACTCAGGGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCT
CCGTGGCGACGGCCAATTGGGCAGCGGTTTGCAGGCGAAGATCGTTGTGA
AAGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGTCCAG
CTCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCA
GGAAAAGGGCGCAGTGGGAGATTAACAACTGGTAGATGCTCGTCAAGAGC
GCCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCA
GCTGCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGC
TGACCGTTGGCAGCAGCATGTCGACTGATAACT

BS03862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1079-PA 753 CG1079-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..869 769..16 3770 100 Minus
Fie-RA 1600 CG1079-RA 273..1026 769..16 3770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 626..244 1915 100 Minus
3L 28110227 3L 3892846..3892993 769..622 725 99.3 Minus
3L 28110227 3L 3893978..3894114 243..107 685 100 Minus
3L 28110227 3L 3894169..3894259 106..16 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:53:37 has no hits.

BS03862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:36 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:52 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:23 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 16..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:55 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 16..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:55 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3892837..3892989 626..780 97 -> Minus
3L 3893533..3893914 244..625 100 -> Minus
3L 3893978..3894114 107..243 100 -> Minus
3L 3894169..3894259 16..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:23 Download gff for BS03862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3892837..3892989 626..780 97 -> Minus
arm_3L 3893533..3893914 244..625 100 -> Minus
arm_3L 3893978..3894114 107..243 100 -> Minus
arm_3L 3894169..3894259 16..106 100   Minus

BS03862.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-11-29

> BS03862.5prime
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTTAAAAGCTTTCTAGACC

BS03862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1079-PA 753 CG1079-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..869 17..770 3770 100 Plus
Fie-RA 1600 CG1079-RA 273..1026 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 160..542 1915 100 Plus
3L 28110227 3L 3892846..3892993 17..164 725 99.3 Plus
3L 28110227 3L 3893978..3894114 543..679 685 100 Plus
3L 28110227 3L 3894169..3894259 680..770 455 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:19:37 has no hits.

BS03862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:37 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:53 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1079-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:14 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 6..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:15 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 6..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:15 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3892842..3892989 14..160 98 -> Plus
3L 3893533..3893914 161..542 100 -> Plus
3L 3893978..3894114 543..679 100 -> Plus
3L 3894169..3894259 680..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:14 Download gff for BS03862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3892842..3892989 14..160 98 -> Plus
arm_3L 3893533..3893914 161..542 100 -> Plus
arm_3L 3893978..3894114 543..679 100 -> Plus
arm_3L 3894169..3894259 680..770 100   Plus

BS03862.complete Sequence

785 bp (785 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634800

> BS03862.complete
GAAGTTATCAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCG
CAGGATGCAAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATG
GCGCCCGTATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCAT
CTACCAGTTGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGAC
TGGCGCATGCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGAC
CAGAAGGACAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCG
CCTGCAAACCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACG
TGATGGCTGGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTT
TTCGGAGTCTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGT
GGAGTTCCTATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGG
ATACAAAAATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATT
TGCTACATCTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAG
CTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTG
TGGCCATACCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGC
GAGCACATGTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTC
TCCCGATGGACAGTGTTAAAAGCTTTCTAGACCAT

BS03862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 753 CG1079-PB 1..753 17..769 3765 100 Plus
Fie-RA 753 CG1079-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RB 1443 CG1079-RB 116..869 17..770 3770 100 Plus
Fie-RA 1600 CG1079-RA 273..1026 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3893532..3893914 160..542 1915 100 Plus
3L 28110227 3L 3892846..3892993 17..164 725 99.3 Plus
3L 28110227 3L 3893978..3894114 543..679 685 100 Plus
3L 28110227 3L 3894169..3894259 680..770 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:42:45 has no hits.

BS03862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:33 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:20 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 6..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:36:40 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 273..1023 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:33 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 264..1026 6..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:54 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 273..1023 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:54 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3893978..3894114 543..679 100 -> Plus
3L 3893533..3893914 161..542 100 -> Plus
3L 3894169..3894256 680..767 100   Plus
3L 3892846..3892989 17..160 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:36:40 Download gff for BS03862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3893533..3893914 161..542 100 -> Plus
arm_3L 3893978..3894114 543..679 100 -> Plus
arm_3L 3894169..3894256 680..767 100   Plus
arm_3L 3892846..3892989 17..160 100 -> Plus

BS03862.pep Sequence

Translation from 16 to 768

> BS03862.pep
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
*

BS03862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-PB 250 CG1079-PB 1..250 1..250 1324 100 Plus
Fie-PA 250 CG1079-PA 1..250 1..250 1324 100 Plus