Clone BS03866 Report

Search the DGRC for BS03866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG1271-RA
Protein status:BS03866.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03866.3prime Sequence

827 bp (795 high quality bases) assembled on 2005-12-01

> BS03866.3prime
ATGGTCTAGAAAGCTTCTAATACCAGTCACTAAACCGGGCAATCGTCCGG
CTCCATTTGTCCATCCGGTTGGCAATGGTTTCGTACTCCTTGGGACGCGG
TTCAAAGACTCGCGCCACTTTCCGGAAACGTTTGAGATCGTTCACATCGC
GCCAGATTCCGAGGTTGATGCCCGCCATGAACGTGGCTCCCATGATGCTG
CTCTCCGCATTGTCCGCCCGCTCCACCCGCAGTCGGCTGAGATCCGCAAG
GAATTGGCAGACGAAGTCATTGCGGGAGACGCCGCCATCAACCCTAATCA
TATGAAGCTTCTGAGAGGTCTCCTTCTCAGCGGCCTCGATCAGCTGCACC
AGACGAAATACTATGCTCTCGAGCAGAGCCCGCACCATGTGGGCTTTGGT
GGTGGACGGAGTGAGGCCAATAAAGCCACTTGCTGACCGATAATCGTTCA
CCGGGGGCCCCAGGCCACTGAAGGCCGGCATGAAGAACACATCGTTCGTA
TCTGGAACGGACTGTGCAATATCTGAGGTGTTCGCTGGACTATCGAAGAG
CTCGCACGATTGCGCCCAAGTGACCACGGTGCCAAAGTCATGGGATGCTC
CCTCAATGCAGTAGACAGCTCCCTGCTGCCTGGTTGGTTTCTTGAACTGC
CAGGCCACCAATGGATACATGCCAGAGATGACAGCTTGGCAACGATCGCC
TGTTACCAGATTAAGGAACGCACCAGTACCCATTGTGACCTTGACGTCGT
TCTTCTGGAAACACTGCGAGCCCCAAATGGCTGCTGTTTGGTCACTTAAA
GAGGCAGCAATGGGTATCTCTGTGTTG

BS03866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PB 1221 CG1271-RB 411..1221 827..17 4055 100 Minus
CG1271-PA 1671 CG1271-RA 861..1671 827..17 4055 100 Minus
CG1271-PD 1620 CG1271-RD 810..1620 827..17 4055 100 Minus
CG1271-PC 1155 CG1271-RC 411..945 827..293 2675 100 Minus
CG1271-PC 1155 CG1271-RC 1000..1155 297..142 780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RD 1725 CG1271-RD 825..1635 827..17 4055 100 Minus
CG1271-RA 1776 CG1271-RA 876..1686 827..17 4055 100 Minus
CG1271-RB 1998 CG1271-RB 1098..1908 827..17 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053881..3054250 827..458 1850 100 Minus
3L 28110227 3L 3054536..3054816 297..17 1405 100 Minus
3L 28110227 3L 3054316..3054481 458..293 830 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:33:47 has no hits.

BS03866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:38 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PD 810..1620 17..827 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:54 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PD 810..1620 17..827 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:04 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RB 1098..1911 11..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:52 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RB 1098..1911 11..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:52 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3053881..3054250 458..827 100 -> Minus
3L 3054317..3054480 294..457 100 -> Minus
3L 3054540..3054819 11..293 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:04 Download gff for BS03866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3053881..3054250 458..827 100 -> Minus
arm_3L 3054317..3054480 294..457 100 -> Minus
arm_3L 3054540..3054819 11..293 98   Minus

BS03866.5prime Sequence

873 bp (812 high quality bases) assembled on 2005-12-01

> BS03866.5prime
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTTGGGCATGTGCA
TCCTACTGCCTTCGGTCCGGATT

BS03866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 1671 CG1271-RA 1..822 17..838 4110 100 Plus
CG1271-PD 1620 CG1271-RD 1..538 17..554 2690 100 Plus
CG1271-PB 1221 CG1271-RB 1..372 467..838 1860 100 Plus
CG1271-PC 1155 CG1271-RC 1..372 467..838 1860 100 Plus
CG1271-PD 1620 CG1271-RD 535..771 602..838 1185 100 Plus
CG1271-PA 1671 CG1271-RA 820..856 837..873 185 100 Plus
CG1271-PD 1620 CG1271-RD 769..805 837..873 185 100 Plus
CG1271-PB 1221 CG1271-RB 370..406 837..873 185 100 Plus
CG1271-PC 1155 CG1271-RC 370..406 837..873 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1776 CG1271-RA 14..871 15..873 4270 99.9 Plus
CG1271-RC 2057 CG1271-RC 421..1093 200..873 3345 99.9 Plus
CG1271-RB 1998 CG1271-RB 421..1093 200..873 3345 99.9 Plus
CG1271-RC 2057 CG1271-RC 159..345 15..201 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053241..3053740 294..793 2500 100 Plus
3L 28110227 3L 3052672..3052858 15..201 935 100 Plus
3L 28110227 3L 3052934..3053027 200..293 470 100 Plus
3L 28110227 3L 3053798..3053876 794..873 350 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 01:29:11 has no hits.

BS03866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:40 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PA 1..856 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:56 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-PA 1..856 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:39 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..871 15..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:54 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..871 15..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:54 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3052672..3052856 15..199 100 -> Plus
3L 3052934..3053027 200..293 100 -> Plus
3L 3053241..3053740 294..793 100 -> Plus
3L 3053798..3053876 794..873 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:39 Download gff for BS03866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3052672..3052856 15..199 100 -> Plus
arm_3L 3052934..3053027 200..293 100 -> Plus
arm_3L 3053241..3053740 294..793 100 -> Plus
arm_3L 3053798..3053876 794..873 98   Plus

BS03866.complete Sequence

1703 bp assembled on 2008-01-02

GenBank Submission: FJ634801

> BS03866.complete
GAAGTTATCAGTCGACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAG
CAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGAC
TCACCCGCTTTCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAG
CTTCGTTCTGGACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTG
TGGAGCTACTGAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGC
TTGTGGCGGAAAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCA
ACTGACACCACCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCA
CGTTTCTCACGTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATC
ACCTGGAAGGATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAG
CTGGACGAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCA
CCCGCCAGTCACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGC
CAGGTCACTCCAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAA
GCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGA
TCCTGCACAAGCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCAC
ATAACCGATGTGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCAC
GCTCAGCTGGTCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAA
TCTTGCCGCGTGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCAT
CCTACTGCCTTCGGTCCGGATTGGGCCAACACAGAGATACCCATTGCTGC
CTCTTTAAGTGACCAAACAGCAGCCATTTGGGGCTCGCAGTGTTTCCAGA
AGAACGACGTCAAGGTCACAATGGGTACTGGTGCGTTCCTTAATCTGGTA
ACAGGCGATCGTTGCCAAGCTGTCATCTCTGGCATGTATCCATTGGTGGC
CTGGCAGTTCAAGAAACCAACCAGGCAGCAGGGAGCTGTCTACTGCATTG
AGGGAGCATCCCATGACTTTGGCACCGTGGTCACTTGGGCGCAATCGTGC
GAGCTCTTCGATAGTCCAGCGAACACCTCAGATATTGCACAGTCCGTTCC
AGATACGAACGATGTGTTCTTCATGCCGGCCTTCAGTGGCCTGGGGCCCC
CGGTGAACGATTATCGGTCAGCAAGTGGCTTTATTGGCCTCACTCCGTCC
ACCACCAAAGCCCACATGGTGCGGGCTCTGCTCGAGAGCATAGTATTTCG
TCTGGTGCAGCTGATCGAGGCCGCTGAGAAGGAGACCTCTCAGAAGCTTC
ATATGATTAGGGTTGATGGCGGCGTCTCCCGCAATGACTTCGTCTGCCAA
TTCCTTGCGGATCTCAGCCGACTGCGGGTGGAGCGGGCGGACAATGCGGA
GAGCAGCATCATGGGAGCCACGTTCATGGCGGGCATCAACCTCGGAATCT
GGCGCGATGTGAACGATCTCAAACGTTTCCGGAAAGTGGCGCGAGTCTTT
GAACCGCGTCCCAAGGAGTACGAAACCATTGCCAACCGGATGGACAAATG
GAGCCGGACGATTGCCCGGTTTAGTGACTGGTATTAGAAGCTTTCTAGAC
CAT

BS03866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1671 CG1271-PA 1..1671 17..1687 8355 100 Plus
CG1271-RB 1221 CG1271-PB 1..1221 467..1687 6105 100 Plus
CG1271-RD 1620 CG1271-PD 535..1620 602..1687 5430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 1776 CG1271-RA 14..1686 15..1687 8365 100 Plus
CG1271-RB 1998 CG1271-RB 421..1908 200..1687 7440 100 Plus
CG1271-RC 2057 CG1271-RC 421..1632 200..1411 6060 100 Plus
CG1271-RB 1998 CG1271-RB 159..345 15..201 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053241..3053740 294..793 2500 100 Plus
3L 28110227 3L 3053798..3054250 794..1246 2265 100 Plus
3L 28110227 3L 3054536..3054816 1407..1687 1405 100 Plus
3L 28110227 3L 3052672..3052858 15..201 935 100 Plus
3L 28110227 3L 3054316..3054481 1246..1411 830 100 Plus
3L 28110227 3L 3052934..3053027 200..293 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:05 has no hits.

BS03866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:26 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:50 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 16..1686 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:04 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 16..1686 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:26 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 14..1689 15..1693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:18 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 16..1686 17..1687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:18 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3054317..3054480 1247..1410 100 -> Plus
3L 3052674..3052856 17..199 100 -> Plus
3L 3052934..3053027 200..293 100 -> Plus
3L 3053241..3053740 294..793 100 -> Plus
3L 3053798..3054250 794..1246 100 -> Plus
3L 3054540..3054816 1411..1687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:04 Download gff for BS03866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3052674..3052856 17..199 100 -> Plus
arm_3L 3052934..3053027 200..293 100 -> Plus
arm_3L 3053241..3053740 294..793 100 -> Plus
arm_3L 3053798..3054250 794..1246 100 -> Plus
arm_3L 3054317..3054480 1247..1410 100 -> Plus
arm_3L 3054540..3054816 1411..1687 100   Plus

BS03866.pep Sequence

Translation from 16 to 1686

> BS03866.pep
MSAPSKVAAKPAGAAKDSQCAEESGPPDSPAFILALDVGTTCVRSFVLDE
QCEVRGSAVDAVELLNPQPGYFEIEPESLWRKIVGVITQAVKNAQLTPPD
ITCLTISTQRCTFLTWDHRSGEYYHNFITWKDLRADELVDQWNASWTKSS
MNWFSYALFLLTRQSRFLAGSVLQLMNGQVTPRLLFEIMNNKKLKQALMQ
KKARVELLDSWILHKLRTGSSRDKDVEHITDVTSSTATGLYDPFTLSWSP
LISWLFGINSKILPRVVDNGYKGFGHVHPTAFGPDWANTEIPIAASLSDQ
TAAIWGSQCFQKNDVKVTMGTGAFLNLVTGDRCQAVISGMYPLVAWQFKK
PTRQQGAVYCIEGASHDFGTVVTWAQSCELFDSPANTSDIAQSVPDTNDV
FFMPAFSGLGPPVNDYRSASGFIGLTPSTTKAHMVRALLESIVFRLVQLI
EAAEKETSQKLHMIRVDGGVSRNDFVCQFLADLSRLRVERADNAESSIMG
ATFMAGINLGIWRDVNDLKRFRKVARVFEPRPKEYETIANRMDKWSRTIA
RFSDWY*

BS03866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 556 CG1271-PA 1..556 1..556 2927 100 Plus
CG1271-PD 539 CG1271-PD 1..539 1..556 2814 96.9 Plus
CG1271-PB 406 CG1271-PB 1..406 151..556 2126 100 Plus
CG1271-PC 384 CG1271-PC 1..315 151..465 1648 100 Plus
Gk-PF 576 CG7995-PF 36..533 36..555 440 25.9 Plus