Clone BS03867 Report

Search the DGRC for BS03867

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptwmd-RA
Protein status:BS03867.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03867.3prime Sequence

746 bp (745 high quality bases) assembled on 2005-12-01

> BS03867.3prime
ATGGTCTAGAAAGCTTTCAGTTTGCCTGCACCTCGCGCGGCGAGCTGATG
GAATTGCCCAGGTCCGCGGGCTCCGTGCACTTCCACAAGCCGTAGGTCTT
GCCCACGGTGGTCTGCCACAGCCGGAGAGTGCCGTCCTCGGAGCCGCTGG
CATAGAGTTCGCCATCCGGGCTGAACTTCACGCTGTGCACGGGCCCGAAA
TGTCCCTTGAAAGATTCAATTTCGTTTCCTGTGATGTAGTCGAATTTGTA
CATCTTAAAGTCCTCGCCGCCACAAACAAACACATGCTTATCCGGATGCA
AACTGGCCGACGCCACGTTCGTCGGCACTTTCACCTCCTTCAGCTTCTTC
AGCGTGTCGATCTCCCAGAAGCTAATCGAGGAGCCGTGCGATATGGTCAG
TATGTGGTTGTCGCTGGAGATCTCTAGGCTGTTCGGATTGCTGTTGAACT
GCAGGCGCTGCACCTCGATGCCCGTCATGCGGTCCCAGAGGCGCACCGTC
TTGTCCTCGGCCGCCGAGATGATGCACTTGTCGCCGCGGCAGAAGAGCGC
CCGCTTGATGGCCCCCGTATGTCCGGCGTACTCCTCCGGCTGCGCCTCGG
GCTGCTCCAGGTTGAAGACCCGCACCAGCTTCTCGTTGCTGCCAGTCACT
ATGTTCTCGGAATCCCTGTCGAAGGCCACGCTCTTCACGATGTGCTTGTG
CTGGAAGCTGTGTATCTCGGCCCCGGTCACCGCATTCCACACCTTG

BS03867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3957-PA 987 CG3957-RA 258..987 746..17 3650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 691..1420 746..17 3650 100 Minus
wmd-RA 1606 CG3957-RA 636..1365 746..17 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545326..23545855 217..746 2650 100 Plus
2R 25286936 2R 23545064..23545264 17..217 1005 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:18:39 has no hits.

BS03867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:41 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 258..987 17..746 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:57 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 258..987 17..746 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:58 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 636..1369 11..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:24 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 636..1369 11..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:24 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23545060..23545263 11..216 98 <- Plus
2R 23545326..23545855 217..746 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:58 Download gff for BS03867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432583..19432786 11..216 98 <- Plus
arm_2R 19432849..19433378 217..746 100   Plus

BS03867.5prime Sequence

905 bp (795 high quality bases) assembled on 2005-11-29

> BS03867.5prime
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGC

BS03867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3957-PA 987 CG3957-RA 1..889 17..905 4445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 433..1322 16..905 4450 100 Plus
wmd-RA 1606 CG3957-RA 378..1267 16..905 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545326..23545993 803..136 3340 100 Minus
2R 25286936 2R 23547490..23547611 137..16 610 100 Minus
2R 25286936 2R 23545162..23545264 905..803 515 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:35:37 has no hits.

BS03867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:42 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:58 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3957-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:28 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 372..1267 9..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:36 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 372..1267 9..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:36 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23545162..23545263 804..905 100 <- Minus
2R 23545326..23545991 138..803 100 <- Minus
2R 23547490..23547617 9..137 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:28 Download gff for BS03867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432685..19432786 804..905 100 <- Minus
arm_2R 19432849..19433514 138..803 100 <- Minus
arm_2R 19435013..19435140 9..137 97   Minus

BS03867.complete Sequence

1019 bp (1019 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634802

> BS03867.complete
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGCAGACCACCGTGGGCAAGACCTACGGCTTGTGGAAGTGCACGGAGC
CCGCGGACCTGGGCAATTCCATCAGCTCGCCGCGCGAGGTGCAGGCAAAC
TGAAAGCTTTCTAGACCAT

BS03867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 987 CG3957-PB 1..987 17..1003 4935 100 Plus
wmd-RA 987 CG3957-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-RB 1661 CG3957-RB 433..1420 16..1003 4940 100 Plus
wmd-RA 1606 CG3957-RA 378..1365 16..1003 4940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23545326..23545993 803..136 3340 100 Minus
2R 25286936 2R 23545064..23545264 1003..803 1005 100 Minus
2R 25286936 2R 23547490..23547611 137..16 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:58:40 has no hits.

BS03867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:34 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 1..987 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:21 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 356..1353 9..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:11 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 379..1364 17..1002 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:34 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RB 356..1353 9..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:34 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
wmd-RA 379..1364 17..1002 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:34 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23545065..23545263 804..1002 100 <- Minus
2R 23545326..23545991 138..803 100 <- Minus
2R 23547490..23547610 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:11 Download gff for BS03867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19432588..19432786 804..1002 100 <- Minus
arm_2R 19432849..19433514 138..803 100 <- Minus
arm_2R 19435013..19435133 17..137 100   Minus

BS03867.pep Sequence

Translation from 16 to 1002

> BS03867.pep
MAANNLRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGD
TGDWVGTFEGHKGAVWNATLNRNATLAASGAADFTGKVWNAVTGAEIHSF
QHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQPEEYAGHTGAIK
RALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNH
ILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDKHVFVCGGEDFK
MYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTV
GKTYGLWKCTEPADLGNSISSPREVQAN*

BS03867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
wmd-PB 328 CG3957-PB 1..328 1..328 1754 100 Plus
wmd-PA 328 CG3957-PA 1..328 1..328 1754 100 Plus
CG10459-PA 322 CG10459-PA 4..297 8..297 493 35.4 Plus
Trip1-PA 326 CG8882-PA 3..320 10..304 290 29.3 Plus
CG30116-PB 1698 CG30116-PB 1242..1493 50..301 225 27.9 Plus