Clone Sequence Records
BS03867.3prime Sequence
746 bp (745 high quality bases) assembled on 2005-12-01
> BS03867.3prime
ATGGTCTAGAAAGCTTTCAGTTTGCCTGCACCTCGCGCGGCGAGCTGATG
GAATTGCCCAGGTCCGCGGGCTCCGTGCACTTCCACAAGCCGTAGGTCTT
GCCCACGGTGGTCTGCCACAGCCGGAGAGTGCCGTCCTCGGAGCCGCTGG
CATAGAGTTCGCCATCCGGGCTGAACTTCACGCTGTGCACGGGCCCGAAA
TGTCCCTTGAAAGATTCAATTTCGTTTCCTGTGATGTAGTCGAATTTGTA
CATCTTAAAGTCCTCGCCGCCACAAACAAACACATGCTTATCCGGATGCA
AACTGGCCGACGCCACGTTCGTCGGCACTTTCACCTCCTTCAGCTTCTTC
AGCGTGTCGATCTCCCAGAAGCTAATCGAGGAGCCGTGCGATATGGTCAG
TATGTGGTTGTCGCTGGAGATCTCTAGGCTGTTCGGATTGCTGTTGAACT
GCAGGCGCTGCACCTCGATGCCCGTCATGCGGTCCCAGAGGCGCACCGTC
TTGTCCTCGGCCGCCGAGATGATGCACTTGTCGCCGCGGCAGAAGAGCGC
CCGCTTGATGGCCCCCGTATGTCCGGCGTACTCCTCCGGCTGCGCCTCGG
GCTGCTCCAGGTTGAAGACCCGCACCAGCTTCTCGTTGCTGCCAGTCACT
ATGTTCTCGGAATCCCTGTCGAAGGCCACGCTCTTCACGATGTGCTTGTG
CTGGAAGCTGTGTATCTCGGCCCCGGTCACCGCATTCCACACCTTG
BS03867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3957-PA | 987 | CG3957-RA | 258..987 | 746..17 | 3650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 691..1420 | 746..17 | 3650 | 100 | Minus |
wmd-RA | 1606 | CG3957-RA | 636..1365 | 746..17 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545326..23545855 | 217..746 | 2650 | 100 | Plus |
2R | 25286936 | 2R | 23545064..23545264 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:18:39 has no hits.
BS03867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:41 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 258..987 | 17..746 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:57 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 258..987 | 17..746 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:58 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 636..1369 | 11..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:24 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 636..1369 | 11..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:24 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545060..23545263 | 11..216 | 98 | <- | Plus |
2R | 23545326..23545855 | 217..746 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:58 Download gff for
BS03867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432583..19432786 | 11..216 | 98 | <- | Plus |
arm_2R | 19432849..19433378 | 217..746 | 100 | | Plus |
BS03867.5prime Sequence
905 bp (795 high quality bases) assembled on 2005-11-29
> BS03867.5prime
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGC
BS03867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3957-PA | 987 | CG3957-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 433..1322 | 16..905 | 4450 | 100 | Plus |
wmd-RA | 1606 | CG3957-RA | 378..1267 | 16..905 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545326..23545993 | 803..136 | 3340 | 100 | Minus |
2R | 25286936 | 2R | 23547490..23547611 | 137..16 | 610 | 100 | Minus |
2R | 25286936 | 2R | 23545162..23545264 | 905..803 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:35:37 has no hits.
BS03867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:42 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:58 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3957-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:28 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 372..1267 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:36 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 372..1267 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:36 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545162..23545263 | 804..905 | 100 | <- | Minus |
2R | 23545326..23545991 | 138..803 | 100 | <- | Minus |
2R | 23547490..23547617 | 9..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:28 Download gff for
BS03867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432685..19432786 | 804..905 | 100 | <- | Minus |
arm_2R | 19432849..19433514 | 138..803 | 100 | <- | Minus |
arm_2R | 19435013..19435140 | 9..137 | 97 | | Minus |
BS03867.complete Sequence
1019 bp (1019 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634802
> BS03867.complete
GAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGA
CCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATC
TGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGAT
GCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACA
AGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCC
TCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGC
CGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCG
ACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGG
GTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACA
TACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCA
TCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGC
ATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGAT
CTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCT
TCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACG
AACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGG
CGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAA
TTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGC
CCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACGGCACTCTCCGGCT
GTGGCAGACCACCGTGGGCAAGACCTACGGCTTGTGGAAGTGCACGGAGC
CCGCGGACCTGGGCAATTCCATCAGCTCGCCGCGCGAGGTGCAGGCAAAC
TGAAAGCTTTCTAGACCAT
BS03867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 987 | CG3957-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
wmd-RA | 987 | CG3957-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-RB | 1661 | CG3957-RB | 433..1420 | 16..1003 | 4940 | 100 | Plus |
wmd-RA | 1606 | CG3957-RA | 378..1365 | 16..1003 | 4940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23545326..23545993 | 803..136 | 3340 | 100 | Minus |
2R | 25286936 | 2R | 23545064..23545264 | 1003..803 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 23547490..23547611 | 137..16 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:40 has no hits.
BS03867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:34 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 1..987 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:21 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 356..1353 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:11 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 379..1364 | 17..1002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:34 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RB | 356..1353 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:34 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wmd-RA | 379..1364 | 17..1002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:34 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23545065..23545263 | 804..1002 | 100 | <- | Minus |
2R | 23545326..23545991 | 138..803 | 100 | <- | Minus |
2R | 23547490..23547610 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:11 Download gff for
BS03867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19432588..19432786 | 804..1002 | 100 | <- | Minus |
arm_2R | 19432849..19433514 | 138..803 | 100 | <- | Minus |
arm_2R | 19435013..19435133 | 17..137 | 100 | | Minus |
BS03867.pep Sequence
Translation from 16 to 1002
> BS03867.pep
MAANNLRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGD
TGDWVGTFEGHKGAVWNATLNRNATLAASGAADFTGKVWNAVTGAEIHSF
QHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQPEEYAGHTGAIK
RALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNH
ILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDKHVFVCGGEDFK
MYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTV
GKTYGLWKCTEPADLGNSISSPREVQAN*
BS03867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wmd-PB | 328 | CG3957-PB | 1..328 | 1..328 | 1754 | 100 | Plus |
wmd-PA | 328 | CG3957-PA | 1..328 | 1..328 | 1754 | 100 | Plus |
CG10459-PA | 322 | CG10459-PA | 4..297 | 8..297 | 493 | 35.4 | Plus |
Trip1-PA | 326 | CG8882-PA | 3..320 | 10..304 | 290 | 29.3 | Plus |
CG30116-PB | 1698 | CG30116-PB | 1242..1493 | 50..301 | 225 | 27.9 | Plus |