Clone BS03868 Report

Search the DGRC for BS03868

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ac3-RA
Protein status:BS03868.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03868.3prime Sequence

896 bp (818 high quality bases) assembled on 2005-12-01

> BS03868.3prime
ATGGTCTAGAAAGCTTCTACTTCACTCTTGCTTCGAATTTCACTTTAATG
TTTTGCTGAGTGCGCAGTACGATTCCGTTCTCAAAGGTGAGATCCTCCAA
CTGAGTGGCGGGCAGGAGTTTGAAGTTCCTAATCACAGCGGCTAGGAGCA
CCTTAATTTCCAGGACGCCGAATTTCTGACCTATGCAATTCCTTGGGCCT
GCACTGAAGGGCACAAAGGCAAAGGGATGACGATTCACAGAGTTCTCGGG
CAGAAAACGTTCGGGCAGGAATTGATTTGGTTTCGGGAAATGCCGTGCGT
CTCTCATGATGTCGTATATGTGGATGCTAATCTGGGCATTCTTGGGTAGG
ACTAAGCCATTCATTACACTTTCCTCTATGCACGTTCGGCCAATGATCGG
AGCTGAGGGAAACAACCTCAGTGATTCCTTGATGACGCACTCCAAGTGGA
TCAGTTCGTTAAACTGGAACATACTGACTTCATCAATATCCTCGGGAAGG
TCTTGTAGCTCTTCGTAGCACCGCTCTTGGACATCCGCATGCAGAGCCAA
CAATAACAGTGTAAAGATTAGACTGGTTGATGTGGTATCGTATCCCCCGA
ACATAAAGGTATTGACTTCATCGCAGATTCCCTGATGATCGATCTTGCCC
TCCGCCTCAGCTGCCAAAAGAGTGTCCAGCATGGCGTAACGCTGCTTCTT
GCCAAATTCATCAACTTGGCCAAGTTGTTTCTGCTTGAATTGCTGCCTTT
TGCGTTGAATGATACCGCTCGAGAAGCCGTGAATTGTACGCAGTATCCTG
GAATACTTTTTATAATCTCCGAAAAGGAAGAAGTACCAGTTGAAGAACAT
GAGCGGATTGCACATGCGCTGATTGAAACTATTTCAAAGTCATGGA

BS03868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14031-PA 1530 Cyp4ac3-RA 669..1530 878..17 4310 100 Minus
CG14032-PA 1530 Cyp4ac1-RA 1393..1487 154..60 350 94.7 Minus
CG17970-PA 1494 Cyp4ac2-RA 863..923 645..585 230 95 Minus
CG14032-PA 1530 Cyp4ac1-RA 796..867 751..680 210 91.6 Minus
CG14032-PA 1530 Cyp4ac1-RA 902..962 645..585 205 93.4 Minus
CG17970-PA 1494 Cyp4ac2-RA 796..830 712..678 150 97.1 Minus
CG14032-PA 1530 Cyp4ac1-RA 1211..1247 336..300 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 698..1578 896..17 4380 99.9 Minus
Cyp4ac1-RA 1666 CG14032-RA 708..1541 872..39 1725 80.6 Minus
Cyp4ac2-RB 1709 CG17970-RB 866..1552 724..38 945 75.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269421..5270301 896..17 4355 99.9 Minus
2L 23513712 2L 5264941..5265774 872..39 1710 80.3 Minus
2L 23513712 2L 5267612..5268298 724..38 945 75.8 Minus
3L 28110227 3L 2476536..2476611 150..225 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-03 13:18:15 has no hits.

BS03868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:43 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 651..1530 17..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:00 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 651..1530 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:53 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 699..1581 13..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:21 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 699..1581 13..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:21 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5269422..5270304 13..895 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:53 Download gff for BS03868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5269422..5270304 13..895 99   Minus

BS03868.5prime Sequence

913 bp (852 high quality bases) assembled on 2005-11-29

> BS03868.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
AGCTGAGGCGGGA

BS03868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14031-PA 1530 Cyp4ac3-RA 1..895 17..911 4475 100 Plus
CG14032-PA 1530 Cyp4ac1-RA 796..867 812..883 210 91.6 Plus
CG17970-PA 1494 Cyp4ac2-RA 796..830 851..885 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 49..943 17..911 4475 100 Plus
Cyp4ac1-RA 1666 CG14032-RA 34..920 17..903 1270 76.8 Plus
Cyp4ac2-RB 1709 CG17970-RB 137..669 110..642 395 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269360..5269666 605..911 1535 100 Plus
2L 23513712 2L 5268797..5269003 216..422 1035 100 Plus
2L 23513712 2L 5268546..5268747 17..218 1010 100 Plus
2L 23513712 2L 5264855..5265153 605..903 595 79.9 Plus
2L 23513712 2L 5269192..5269300 497..605 530 99.1 Plus
2L 23513712 2L 5269051..5269135 420..504 425 100 Plus
2L 23513712 2L 5264034..5264216 17..199 300 77.6 Plus
2L 23513712 2L 5264319..5264496 242..419 290 77.5 Plus
2L 23513712 2L 5267612..5267676 839..903 190 86.2 Plus
Blast to na_te.dros performed on 2015-02-12 05:59:34 has no hits.

BS03868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:44 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 1..895 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:02 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 1..895 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:17 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..943 17..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:46 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..943 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:46 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5269361..5269666 606..912 99   Plus
2L 5268546..5268747 17..218 100 -> Plus
2L 5268800..5269003 219..422 100 -> Plus
2L 5269054..5269135 423..504 100 -> Plus
2L 5269200..5269300 505..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:17 Download gff for BS03868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5268546..5268747 17..218 100 -> Plus
arm_2L 5268800..5269003 219..422 100 -> Plus
arm_2L 5269054..5269135 423..504 100 -> Plus
arm_2L 5269200..5269300 505..605 100 -> Plus
arm_2L 5269361..5269666 606..912 99   Plus

BS03868.complete Sequence

1562 bp (1562 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634803

> BS03868.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
AGCTGAGGCGGAGGGCAAGATCGATCATCAGGGAATCTGCGATGAAGTCA
ATACCTTTATGTTCGGGGGATACGATACCACATCAACCAGTCTAATCTTT
ACACTGTTATTGTTGGCTCTGCATGCGGATGTCCAAGAGCGGTGCTACGA
AGAGCTACAAGACCTTCCCGAGGATATTGATGAAGTCAGTATGTTCCAGT
TTAACGAACTGATCCACTTGGAGTGCGTCATCAAGGAATCACTGAGGTTG
TTTCCCTCAGCTCCGATCATTGGCCGAACGTGCATAGAGGAAAGTGTAAT
GAATGGCTTAGTCCTACCCAAGAATGCCCAGATTAGCATCCACATATACG
ACATCATGAGAGACGCACGGCATTTCCCGAAACCAAATCAATTCCTGCCC
GAACGTTTTCTGCCCGAGAACTCTGTGAATCGTCATCCCTTTGCCTTTGT
GCCCTTCAGTGCAGGCCCAAGGAATTGCATAGGTCAGAAATTCGGCGTCC
TGGAAATTAAGGTGCTCCTAGCCGCTGTGATTAGGAACTTCAAACTCCTG
CCCGCCACTCAGTTGGAGGATCTCACCTTTGAGAACGGAATCGTACTGCG
CACTCAGCAAAACATTAAAGTGAAATTCGAAGCAAGAGTGAAGTAGAAGC
TTTCTAGACCAT

BS03868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1530 CG14031-PA 1..1530 17..1546 7650 100 Plus
Cyp4ac1-RA 1530 CG14032-PA 1..1508 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1536 CG17970-PB 826..1512 839..1525 945 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 49..1578 17..1546 7650 100 Plus
Cyp4ac1-RA 1666 CG14032-RA 34..1541 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1709 CG17970-RB 866..1552 839..1525 945 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269360..5270301 605..1546 4710 100 Plus
2L 23513712 2L 5264855..5265774 605..1524 1855 80.1 Plus
2L 23513712 2L 5268797..5269003 216..422 1035 100 Plus
2L 23513712 2L 5268546..5268747 17..218 1010 100 Plus
2L 23513712 2L 5267612..5268298 839..1525 945 75.8 Plus
2L 23513712 2L 5269192..5269300 497..605 530 99.1 Plus
2L 23513712 2L 5269051..5269135 420..504 425 100 Plus
2L 23513712 2L 5264034..5264216 17..199 300 77.6 Plus
2L 23513712 2L 5264319..5264496 242..419 290 77.5 Plus
3L 28110227 3L 2476536..2476611 1413..1338 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 10:30:35 has no hits.

BS03868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:35 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:23 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 30..1562 17..1550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:28 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..1578 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:35 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 30..1562 17..1550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:41 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..1578 17..1546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:41 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5268800..5269003 219..422 100 -> Plus
2L 5269054..5269135 423..504 100 -> Plus
2L 5269200..5269300 505..605 100 -> Plus
2L 5268546..5268747 17..218 100 -> Plus
2L 5269361..5270301 606..1546 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:28 Download gff for BS03868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5268546..5268747 17..218 100 -> Plus
arm_2L 5268800..5269003 219..422 100 -> Plus
arm_2L 5269054..5269135 423..504 100 -> Plus
arm_2L 5269200..5269300 505..605 100 -> Plus
arm_2L 5269361..5270301 606..1546 100   Plus

BS03868.pep Sequence

Translation from 16 to 1545

> BS03868.pep
MWIALLGSSLLIGALWLLLRQLNKTYFILSLCKRVRTADGSPLESKVFVV
PGKTRFGNNLDLLNLTPANIFSYIRESTAKANGQNYIWNFLFAPEYNIVR
AEDAEEIFQSTKITTKNMSYELIRPFLGDGLLISIDQKWHTRRKTLTPAF
HFNILQSFLSIFKEESKKFIKILDKNVGFELELNQIIPQFTLNNICETAL
GVKLDDMSEGNEYRKAIHDFEIVFNQRMCNPLMFFNWYFFLFGDYKKYSR
ILRTIHGFSSGIIQRKRQQFKQKQLGQVDEFGKKQRYAMLDTLLAAEAEG
KIDHQGICDEVNTFMFGGYDTTSTSLIFTLLLLALHADVQERCYEELQDL
PEDIDEVSMFQFNELIHLECVIKESLRLFPSAPIIGRTCIEESVMNGLVL
PKNAQISIHIYDIMRDARHFPKPNQFLPERFLPENSVNRHPFAFVPFSAG
PRNCIGQKFGVLEIKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQQNI
KVKFEARVK*

BS03868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-PA 509 CG14031-PA 1..509 1..509 2642 100 Plus
Cyp4ac1-PA 509 CG14032-PA 1..509 1..509 2142 77 Plus
Cyp4ac2-PB 511 CG17970-PB 6..508 5..507 1895 69.8 Plus
Cyp4p1-PA 513 CG10842-PA 4..512 1..507 1118 45.7 Plus
Cyp4p3-PA 515 CG10843-PA 6..514 11..507 1080 43.6 Plus