Clone Sequence Records
BS03869.3prime Sequence
907 bp (812 high quality bases) assembled on 2005-12-01
> BS03869.3prime
ATGGTCTAGAAAGCTTTCACCACAACTTATTGTGATAGAACTTTAGATCG
TAGTAGCCCTGATCGGTGAGGCCGCCGCCGCCGGAGGACACGGTGGACAT
GGCATCCGTATTGTCCTGGCCCGGCGAGGTGACTTCATGACCCGGCGGAC
GGTTGATCTTCACTACGCCGAAATCTTCGCGCTCCATCTGATCGAACTCC
ATCTTGCTGCTGGGCATCACGGCCATTCCGACGCCAAACGAGCGATTCTT
CATGCCCGTGTGCTGCTTGCTCAGCTGGAAAGCCGGAGCTCTCCGGTTGT
CGCCCACAATGCTCTCGGCCACCTCGGGCGATCGCACGGATGGTGGAGTC
GGAGTGTGGCTCTTTGGCGGCGGTGATGGTGGCGTAATCACCTCCGGTTC
GGGTTCGGGTTCCGGCTCAGGCTCTGGCTCCGGTTCAACTTCTGGCTCCG
GCTCATAGCTGTTGGCTTCCAAGTCGGCCAGGCTCTGGCGCTGCAGTTGC
TCGGCAATCTCTGGAATATCGTGATTACCATTGCCACTGTTCGCTTCTGC
ACTGCCATTGCCATTTCCGCCCTTCGAGTTGCCGGCATGAATTATCTCGG
CCATGCTGCAGGTGGGACGTTTAGCCCCATATCGTCCGGACGGAGAGATC
TGTGTTATCTGCTGCAGTCGTGCATTCGGTGTTGTCTGCTGCTGCGAACC
ACGTCGCTGGTTAGAATCCTCGCCCAGGTAAGTAGCGCCAAAGAGGTGTG
TGTTAGGACTGTTTGTGATGTGCAGGCCATTCGGGGTGCCGTTAGCATGA
CCGTTACCACCTCCCATCCCCGATTCCCCATCGTTAAAGAATCCCTCGTA
AAGCACGAAATTGTTCGCTTGCGGAATGATTCGCTTTTATCCGTAATGCT
TGCTAAG
BS03869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PC | 1386 | CG3967-RC | 496..1386 | 907..17 | 4355 | 99.5 | Minus |
| CG3967-PD | 1386 | CG3967-RD | 496..1386 | 907..17 | 4355 | 99.5 | Minus |
| CG3967-PE | 1386 | CG3967-RE | 496..1386 | 907..17 | 4355 | 99.5 | Minus |
| CG3967-PA | 1386 | CG3967-RA | 496..1386 | 907..17 | 4355 | 99.5 | Minus |
| CG3967-PB | 876 | CG3967-RB | 496..866 | 907..537 | 1755 | 98.9 | Minus |
| CG32555-PB | 4686 | RhoGAPp190-RB | 3333..3359 | 392..418 | 135 | 100 | Plus |
| CG32555-PC | 4686 | RhoGAPp190-RC | 3333..3359 | 392..418 | 135 | 100 | Plus |
| CG32555-PA | 4686 | RhoGAPp190-RA | 3333..3359 | 392..418 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 2238 | CG3967-RA | 698..1589 | 907..16 | 4400 | 99.6 | Minus |
| CG3967-RE | 2142 | CG3967-RE | 602..1493 | 907..16 | 4400 | 99.6 | Minus |
| CG3967-RD | 2196 | CG3967-RD | 656..1547 | 907..16 | 4400 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9414245..9414770 | 16..541 | 2630 | 100 | Plus |
| 3L | 28110227 | 3L | 9417652..9417819 | 596..763 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9418344..9418492 | 759..907 | 685 | 97.3 | Plus |
| 3L | 28110227 | 3L | 9415408..9415468 | 537..597 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:52:17 has no hits.
BS03869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:45 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PE | 496..1386 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:04 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PD | 496..1386 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:21 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 656..1547 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:48 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 656..1547 | 16..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:48 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9414245..9414765 | 16..536 | 100 | <- | Plus |
| 3L | 9415408..9415466 | 537..595 | 100 | <- | Plus |
| 3L | 9417652..9417814 | 596..758 | 100 | <- | Plus |
| 3L | 9418344..9418492 | 759..907 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:21 Download gff for
BS03869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9411444..9411592 | 759..907 | 97 | | Plus |
| arm_3L | 9407345..9407865 | 16..536 | 100 | <- | Plus |
| arm_3L | 9408508..9408566 | 537..595 | 100 | <- | Plus |
| arm_3L | 9410752..9410914 | 596..758 | 100 | <- | Plus |
BS03869.5prime Sequence
843 bp (814 high quality bases) assembled on 2005-12-01
> BS03869.5prime
GAAGTTATCAGTCGACATGGTGGAATTCCGCTTCGATATTAAGCCGCTGT
TCGCGCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTT
CGCGGCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGAT
CATTGACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAAC
CGGTGACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTAT
CTGCTGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTT
GAAGGTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGC
GCATGGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCT
CGTCAGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGA
AGAGCAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGC
TACTGTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAA
GCGAACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGG
GAATGGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACA
TCACAAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAG
GATTCTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACG
ACTGCAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAAC
GTCCCACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTC
BS03869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PB | 876 | CG3967-RB | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG3967-PC | 1386 | CG3967-RC | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG3967-PD | 1386 | CG3967-RD | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG3967-PE | 1386 | CG3967-RE | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG3967-PA | 1386 | CG3967-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RF | 1485 | CG3967-RF | 161..987 | 17..843 | 4135 | 100 | Plus |
| CG3967-RA | 2238 | CG3967-RA | 203..1029 | 17..843 | 4135 | 100 | Plus |
| CG3967-RE | 2142 | CG3967-RE | 107..933 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9418344..9418724 | 660..280 | 1905 | 100 | Minus |
| 3L | 28110227 | 3L | 9417652..9417819 | 823..656 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 9418844..9418999 | 279..124 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9419095..9419201 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:29:47 has no hits.
BS03869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:46 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PD | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:05 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:28 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..933 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:07 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..933 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:07 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9419095..9419205 | 9..123 | 96 | | Minus |
| 3L | 9415447..9415466 | 824..843 | 100 | <- | Minus |
| 3L | 9417652..9417814 | 661..823 | 100 | <- | Minus |
| 3L | 9418344..9418724 | 280..660 | 100 | <- | Minus |
| 3L | 9418844..9418999 | 124..279 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:28 Download gff for
BS03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9408547..9408566 | 824..843 | 100 | <- | Minus |
| arm_3L | 9410752..9410914 | 661..823 | 100 | <- | Minus |
| arm_3L | 9411444..9411824 | 280..660 | 100 | <- | Minus |
| arm_3L | 9411944..9412099 | 124..279 | 100 | <- | Minus |
| arm_3L | 9412195..9412305 | 9..123 | 96 | | Minus |
BS03869.complete Sequence
1418 bp (1418 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634804
> BS03869.complete
GAAGTTATCAGTCGACATGGTGGAATTCCGCTTCGATATTAAGCCGCTGT
TCGCGCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTT
CGCGGCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGAT
CATTGACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAAC
CGGTGACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTAT
CTGCTGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTT
GAAGGTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGC
GCATGGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCT
CGTCAGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGA
AGAGCAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGC
TACTGTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAA
GCGAACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGG
GAATGGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACA
TCACAAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAG
GATTCTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACG
ACTGCAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAAC
GTCCCACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTCGAAGGGC
GGAAATGGCAATGGCAGTGCAGAAGCGAACAGTGGCAATGGTAATCACGA
TATTCCAGAGATTGCCGAGCAACTGCAGCGCCAGAGCCTGGCCGACTTGG
AAGCCAACAGCTATGAGCCGGAGCCAGAAGTTGAACCGGAGCCAGAGCCT
GAGCCGGAACCCGAACCCGAACCGGAGGTGATTACGCCACCATCACCGCC
GCCAAAGAGCCACACTCCGACTCCACCATCCGTGCGATCGCCCGAGGTGG
CCGAGAGCATTGTGGGCGACAACCGGAGAGCTCCGGCTTTCCAGCTGAGC
AAGCAGCACACGGGCATGAAGAATCGCTCGTTTGGCGTCGGAATGGCCGT
GATGCCCAGCAGCAAGATGGAGTTCGATCAGATGGAGCGCGAAGATTTCG
GCGTAGTGAAGATCAACCGTCCGCCGGGTCATGAAGTCACCTCGCCGGGC
CAGGACAATACGGATGCCATGTCCACCGTGTCCTCCGGCGGCGGCGGCCT
CACCGATCAGGGCTACTACGATCTAAAGTTCTATCACAATAAGTTGTGGT
GAAAGCTTTCTAGACCAT
BS03869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 1386 | CG3967-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| CG3967-RE | 1386 | CG3967-PE | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| CG3967-RD | 1386 | CG3967-PD | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 2238 | CG3967-RA | 203..1589 | 17..1403 | 6935 | 100 | Plus |
| CG3967-RE | 2142 | CG3967-RE | 107..1493 | 17..1403 | 6935 | 100 | Plus |
| CG3967-RD | 2196 | CG3967-RD | 161..1547 | 17..1403 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9414245..9414770 | 1403..878 | 2630 | 100 | Minus |
| 3L | 28110227 | 3L | 9418344..9418724 | 660..280 | 1905 | 100 | Minus |
| 3L | 28110227 | 3L | 9417652..9417819 | 823..656 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 9418844..9418999 | 279..124 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9419095..9419201 | 123..17 | 535 | 100 | Minus |
| 3L | 28110227 | 3L | 9415408..9415468 | 882..822 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:06 has no hits.
BS03869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:17 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 1..1386 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:00 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..1493 | 9..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:55 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 161..1545 | 17..1401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:17 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..1493 | 9..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:21 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 161..1545 | 17..1401 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:21 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9414247..9414765 | 883..1401 | 100 | <- | Minus |
| 3L | 9415408..9415466 | 824..882 | 100 | <- | Minus |
| 3L | 9417652..9417814 | 661..823 | 100 | <- | Minus |
| 3L | 9418344..9418724 | 280..660 | 100 | <- | Minus |
| 3L | 9418844..9418999 | 124..279 | 100 | <- | Minus |
| 3L | 9419095..9419201 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:55 Download gff for
BS03869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9407347..9407865 | 883..1401 | 100 | <- | Minus |
| arm_3L | 9408508..9408566 | 824..882 | 100 | <- | Minus |
| arm_3L | 9410752..9410914 | 661..823 | 100 | <- | Minus |
| arm_3L | 9411444..9411824 | 280..660 | 100 | <- | Minus |
| arm_3L | 9411944..9412099 | 124..279 | 100 | <- | Minus |
| arm_3L | 9412195..9412301 | 17..123 | 100 | | Minus |
BS03869.pep Sequence
Translation from 16 to 1401
> BS03869.pep
MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG
QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK
NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA
RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN
GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT
QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA
EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT
PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK
MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY
YDLKFYHNKLW*
BS03869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-PA | 461 | CG3967-PA | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PE | 461 | CG3967-PE | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PD | 461 | CG3967-PD | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PC | 461 | CG3967-PC | 1..461 | 1..461 | 2432 | 100 | Plus |
| CG3967-PF | 291 | CG3967-PF | 1..288 | 1..288 | 1501 | 100 | Plus |
