Clone BS03870 Report

Search the DGRC for BS03870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptlaza-RA
Protein status:BS03870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03870.3prime Sequence

889 bp (813 high quality bases) assembled on 2005-12-01

> BS03870.3prime
ATGGTCTAGAAAGCTTTCAGACGACGTGGGTCAGATCGGTGGGCGGAGTG
ACGGGACGCGACATTTGCGACTTGTATACCTCCTCGTTGTCGTCCTCATT
CTCTGCGTGCGAGTCCTGAGAGTCGTGCGAGTCCTCGGAGTCTCTGCAGT
CCCTGGAATCCTCCACATCGGAGTCCTGGATGTCGTCGAGCGGCGTCGTT
GTGGTCATTGAAGCGGAAGCAGCTGCTGCCAGGAAGTGGACCTTAGCAGA
GGCCGTCGAGTTATTGTTGTCCGCCATTAGCTGGTGGTGCAGGTGGTGGC
TGTAGTTCAAGGAGGGCGGGATTCTGCCGGTGGAGCTGGTCTGCCGCCGC
AATAGGTTACCCACGTAGGCAGCTGTGATGGCGGCATAGGTCACTCCAAG
GAGGGCGCCGGCCAGGACGTCGGACCAGTGGTGCCAGTAGTCGGCTACGC
GGCTCAGGGAAACGCAGAGGGCAGCCATAAGGAGCAGGAACTGCAGGACG
TGCCGCAGGACTCGCACTCCCCCTCGTCCCCGCCACACCCCGTGTACGTA
GAGGGCCAGCAGGACCATCGAATAGAAGCTCAAGCTGCTGTGGGCACTCG
GGAAACTGACGTGCAACTCGCGGATCTGTCGCGTGGAGAGGTTGTTGTTA
GTGCAGTGGAACTGCTCCACGTACAGCTCAGCGTTCTGGAGGTCCGAGCA
GGAGCTGCCATCGTCGAGGCGCGGCTGGCAACCGTGGAAGAAGTGCGGCC
TCAGCCGCCCGACGGCGTGCTTCGCCAGCTCGGTGGTGAGATAGGTGGCT
ATGAAGCCGAAGCTGAAGGTGGCCTCTGCGCGCCACAGATTGCGGAAGTA
GAGCCTGGTGCGGAAGCGCTTGCAGATCCGCATGATCTC

BS03870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11440-PA 1005 CG11440-RA 133..1005 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
laza-RA 2316 CG11440-RA 706..1578 889..17 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22459554..22460426 17..889 4365 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:38:31 has no hits.

BS03870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:47 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11440-PA 133..1005 17..889 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:06 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11440-PA 133..1005 17..889 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:48 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
laza-RA 706..1578 17..889 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:31 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
laza-RA 706..1578 17..889 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:31 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22459554..22460426 17..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:48 Download gff for BS03870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22452654..22453526 17..889 100   Plus

BS03870.5prime Sequence

876 bp (792 high quality bases) assembled on 2005-11-29

> BS03870.5prime
GAAGTTATCAGTCGACATGCACACTTTCAAAAGGGGCTTCTTTTGCTCTG
ATCTGAGCATACGGTATCCCTACAAGGACTGCACGATCACGGTGCCGATG
CTACTGCTCATGATGCTCCTGCTCCCGATGCTCTTCGTGGCCGTGGTGGA
GATCATGCGGATCTGCAAGCGCTTCCGCACCAGGCTCTACTTCCGCAATC
TGTGGCGCGCAGAGGCCACCTTCAGCTTCGGCTTCATAGCCACCTATCTC
ACCACCGAGCTGGCGAAGCACGCCGTCGGGCGGCTGAGGCCGCACTTCTT
CCACGGTTGCCAGCCGCGCCTCGACGATGGCAGCTCCTGCTCGGACCTCC
AGAACGCTGAGCTGTACGTGGAGCAGTTCCACTGCACTAACAACAACCTC
TCCACGCGACAGATCCGCGAGTTGCACGTCAGTTTCCCGAGTGCCCACAG
CAGCTTGAGCTTCTATTCGATGGTCCTGCTGGCCCTCTACGTACACGGGG
TGTGGCGGGGACGAGGGGGAGTGCGAGTCCTGCGGCACGTCCTGCAGTTC
CTGCTCCTTATGGCTGCCCTCTGCGTTTCCCTGAGCCGCGTAGCCGACTA
CTGGCACCACTGGTCCGACGTCCTGGCCGGCGCCCTCCTTGGAGTGACCT
ATGCCGCCATCACAGCTGCCTACGTGGGTAACCTATTGCGGCGGCAGACC
AGCTCCACCGGCAGAATCCCGCCCTCCTTGAACTACAGCCACCACCTGCA
CCACCAGCTAATGGCGGACAACAATAACTCGACGGCCTCTGCTAAGGTCC
ACTTCCTGGCAGCAGCTGCTTCCGCTTCAATGACCACAACGACGCCGCTC
GACGACATCCAGGACTCCGATGTGGA

BS03870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11440-PA 1005 CG11440-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
laza-RA 2316 CG11440-RA 573..1433 16..876 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22459699..22460559 876..16 4305 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:24:48 has no hits.

BS03870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:49 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11440-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:08 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11440-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:02 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
laza-RA 570..1432 10..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:44 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
laza-RA 570..1432 10..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:44 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22459700..22460562 10..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:02 Download gff for BS03870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22452800..22453662 10..875 99   Minus

BS03870.complete Sequence

1037 bp (1037 high quality bases) assembled on 2006-02-02

> BS03870.complete
GAAGTTATCAGTCGACATGCACACTTTCAAAAGGGGCTTCTTTTGCTCTG
ATCTGAGCATACGGTATCCCTACAAGGACTGCACGATCACGGTGCCGATG
CTACTGCTCATGATGCTCCTGCTCCCGATGCTCTTCGTGGCCGTGGTGGA
GATCATGCGGATCTGCAAGCGCTTCCGCACCAGGCTCTACTTCCGCAATC
TGTGGCGCGCAGAGGCCACCTTCAGCTTCGGCTTCATAGCCACCTATCTC
ACCACCGAGCTGGCGAAGCACGCCGTCGGGCGGCTGAGGCCGCACTTCTT
CCACGGTTGCCAGCCGCGCCTCGACGATGGCAGCTCCTGCTCGGACCTCC
AGAACGCTGAGCTGTACGTGGAGCAGTTCCACTGCACTAACAACAACCTC
TCCACGCGACAGATCCGCGAGTTGCACGTCAGTTTCCCGAGTGCCCACAG
CAGCTTGAGCTTCTATTCGATGGTCCTGCTGGCCCTCTACGTACACGGGG
TGTGGCGGGGACGAGGGGGAGTGCGAGTCCTGCGGCACGTCCTGCAGTTC
CTGCTCCTTATGGCTGCCCTCTGCGTTTCCCTGAGCCGCGTAGCCGACTA
CTGGCACCACTGGTCCGACGTCCTGGCCGGCGCCCTCCTTGGAGTGACCT
ATGCCGCCATCACAGCTGCCTACGTGGGTAACCTATTGCGGCGGCAGACC
AGCTCCACCGGCAGAATCCCGCCCTCCTTGAACTACAGCCACCACCTGCA
CCACCAGCTAATGGCGGACAACAATAACTCGACGGCCTCTGCTAAGGTCC
ACTTCCTGGCAGCAGCTGCTTCCGCTTCAATGACCACAACGACGCCGCTC
GACGACATCCAGGACTCCGATGTGGAGGATTCCAGGGACTGCAGAGACTC
CGAGGACTCGCACGACTCTCAGGACTCGCACGCAGAGAATGAGGACGACA
ACGAGGAGGTATACAAGTCGCAAATGTCGCGTCCCGTCACTCCGCCCACC
GATCTGACCCACGTCGTCTGAAAGCTTTCTAGACCAT

BS03870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
laza-RA 1005 CG11440-PA 1..1005 17..1021 5025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
laza-RA 2316 CG11440-RA 573..1578 16..1021 5030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22459554..22460559 1021..16 5030 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:33:48 has no hits.

BS03870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:18 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 17..1021 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:02 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 622..1630 10..1021 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:08 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 574..1577 17..1020 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:18 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 622..1630 10..1021 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:30 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 574..1577 17..1020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:30 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22459555..22460558 17..1020 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:08 Download gff for BS03870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22452655..22453658 17..1020 100   Minus

BS03870.pep Sequence

Translation from 16 to 1020

> BS03870.pep
MHTFKRGFFCSDLSIRYPYKDCTITVPMLLLMMLLLPMLFVAVVEIMRIC
KRFRTRLYFRNLWRAEATFSFGFIATYLTTELAKHAVGRLRPHFFHGCQP
RLDDGSSCSDLQNAELYVEQFHCTNNNLSTRQIRELHVSFPSAHSSLSFY
SMVLLALYVHGVWRGRGGVRVLRHVLQFLLLMAALCVSLSRVADYWHHWS
DVLAGALLGVTYAAITAAYVGNLLRRQTSSTGRIPPSLNYSHHLHHQLMA
DNNNSTASAKVHFLAAAASASMTTTTPLDDIQDSDVEDSRDCRDSEDSHD
SQDSHAENEDDNEEVYKSQMSRPVTPPTDLTHVV*

BS03870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
laza-PA 334 CG11440-PA 1..334 1..334 1761 100 Plus
CG11426-PA 340 CG11426-PA 63..291 5..223 498 43.5 Plus
CG11438-PB 341 CG11438-PB 34..293 4..258 486 40.1 Plus
CG11438-PA 341 CG11438-PA 34..293 4..258 486 40.1 Plus
wun-PA 300 CG8804-PA 35..273 4..226 483 40.9 Plus