Clone BS03872 Report

Search the DGRC for BS03872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptspn-F-RA
Protein status:BS03872.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03872.3prime Sequence

887 bp (795 high quality bases) assembled on 2005-12-01

> BS03872.3prime
ATGGTCTAGAAAGCTTTCAGAAGTCACCCACAGCATGGGAAACGAACTCA
AACTGGCGCTCAATGCTGTTCTCCGACTCCAGTTCCAGTGCATCGTCGAT
GAAGTGCATCTCGACGTGCTCGCGGAACGCATTGAAGGACACTTGGCTGG
AGTACTGCTTGCCGCACATAGGGCAGGTCTTCTCCATTGCGTCGGCTGCA
TCTGCTTTGATTTTCTCTTGTATTATGTTAATTCTCTGGCTGGGCGGCGT
GCCATTGTGTCCATTGTGTTGGCTCTCATAGTTCTTCAGCTCGCTGGTCA
GGCTGTCGTCCGTTTCCAGACTTTTGTCGGCCATCTCCGGTTTTTTGATG
GTTTTCTGGGCACATTCCGGACAGGGCTTGAGTGCTATGCGATTTTCTAG
CAGAGTCATTACCGATCTGAGCTCCTGCTGCTGCTTCATGGCCTCTCGCC
TCAGCTCCTGCAGTCCATCCAAACATCTTTTGGCATCCACATTGGCATCT
GGTTCACTAGTGGTTTCCTCCACCTTTTGCAGGTTGTAGGGGTAACCTAG
TTCCTCACTGCTGGCACCGAAGTCATCCAGGGCTATTTCCTCCAGACTGA
GATCCTTAATGCCGTCGGAGAGCATCTTTTGGCGAAGGTGAGGATTGGGG
GAGTGCTGCGTAAAGGTCTTGGAGCGCACCAGGTTCTGGTTTTGCTGGGC
TCGCGAGTCTGTTGAGCTGGGCAGTGCGTTCAGCTGCTGATCCTTGGAGA
TCTGCGATAGGCGGGACCAGAGCCGTCTGTTCTCGTTGGATACCATGCCC
ATGTGCTCCTCCAGCTGCTCCTTTTGGCGCTGCAGCTCAGAGACCTGTGC
TTTCAGAGAGAGGACGTCCCCAGTGACCCCGATTTCG

BS03872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 225..1095 887..17 4330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 341..1211 887..17 4340 99.9 Minus
spn-F-RA 1465 CG12114-RA 341..1211 887..17 4340 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255467..31255969 887..385 2500 99.8 Minus
3R 32079331 3R 31256036..31256405 386..17 1850 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:19:10 has no hits.

BS03872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:50 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 225..1095 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:09 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 225..1095 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:47 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 341..1211 17..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:25 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 341..1211 17..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:25 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255467..31255969 385..887 99 -> Minus
3R 31256038..31256405 17..384 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:47 Download gff for BS03872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27081189..27081691 385..887 99 -> Minus
arm_3R 27081760..27082127 17..384 100   Minus

BS03872.5prime Sequence

879 bp (779 high quality bases) assembled on 2005-12-01

> BS03872.5prime
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCAC

BS03872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..979 17..879 4315 100 Plus
spn-F-RA 1465 CG12114-RA 117..979 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 17..743 3635 100 Plus
3R 32079331 3R 31256036..31256173 742..879 690 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:29:03 has no hits.

BS03872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:51 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:11 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:38 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 115..979 14..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:25 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 115..979 14..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:25 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255241..31255969 14..743 99 -> Plus
3R 31256038..31256173 744..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:38 Download gff for BS03872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080963..27081691 14..743 99 -> Plus
arm_3R 27081760..27081895 744..879 100   Plus

BS03872.complete Sequence

1127 bp (1127 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634805

> BS03872.complete
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAA
CATAATACAAGAGAAAATCAAAGCAGATGCAGCCGACGCAATGGAGAAGA
CCTGCCCTATGTGCGGCAAGCAGTACTCCAGCCAAGTGTCCTTCAATGCG
TTCCGCGAGCACGTCGAGATGCACTTCATCGACGATGCACTGGAACTGGA
GTCGGAGAACAGCATTGAGCGCCAGTTTGAGTTCGTTTCCCATGCTGTGG
GTGACTTCTGAAAGCTTTCTAGACCAT

BS03872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1131 CG12114-PB 1..1095 17..1111 5475 100 Plus
spn-F-RA 1095 CG12114-PA 1..1095 17..1111 5475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..1211 17..1111 5475 100 Plus
spn-F-RA 1465 CG12114-RA 117..1211 17..1111 5475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 17..743 3635 100 Plus
3R 32079331 3R 31256036..31256405 742..1111 1850 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:50:06 has no hits.

BS03872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:19 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 1..1095 17..1111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:03 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 100..1196 14..1111 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:22 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 117..1210 17..1110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:20 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 100..1196 14..1111 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:18 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 117..1210 17..1110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:18 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31255243..31255969 17..743 100 -> Plus
3R 31256038..31256404 744..1110 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:22 Download gff for BS03872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080965..27081691 17..743 100 -> Plus
arm_3R 27081760..27082126 744..1110 100   Plus

BS03872.pep Sequence

Translation from 16 to 1110

> BS03872.pep
MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR
VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL
EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF
TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET
TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC
AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK
IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI
ERQFEFVSHAVGDF*

BS03872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-PA 364 CG12114-PA 1..364 1..364 1838 100 Plus
spn-F-PB 376 CG12114-PB 1..364 1..364 1838 100 Plus