Clone Sequence Records
BS03872.3prime Sequence
887 bp (795 high quality bases) assembled on 2005-12-01
> BS03872.3prime
ATGGTCTAGAAAGCTTTCAGAAGTCACCCACAGCATGGGAAACGAACTCA
AACTGGCGCTCAATGCTGTTCTCCGACTCCAGTTCCAGTGCATCGTCGAT
GAAGTGCATCTCGACGTGCTCGCGGAACGCATTGAAGGACACTTGGCTGG
AGTACTGCTTGCCGCACATAGGGCAGGTCTTCTCCATTGCGTCGGCTGCA
TCTGCTTTGATTTTCTCTTGTATTATGTTAATTCTCTGGCTGGGCGGCGT
GCCATTGTGTCCATTGTGTTGGCTCTCATAGTTCTTCAGCTCGCTGGTCA
GGCTGTCGTCCGTTTCCAGACTTTTGTCGGCCATCTCCGGTTTTTTGATG
GTTTTCTGGGCACATTCCGGACAGGGCTTGAGTGCTATGCGATTTTCTAG
CAGAGTCATTACCGATCTGAGCTCCTGCTGCTGCTTCATGGCCTCTCGCC
TCAGCTCCTGCAGTCCATCCAAACATCTTTTGGCATCCACATTGGCATCT
GGTTCACTAGTGGTTTCCTCCACCTTTTGCAGGTTGTAGGGGTAACCTAG
TTCCTCACTGCTGGCACCGAAGTCATCCAGGGCTATTTCCTCCAGACTGA
GATCCTTAATGCCGTCGGAGAGCATCTTTTGGCGAAGGTGAGGATTGGGG
GAGTGCTGCGTAAAGGTCTTGGAGCGCACCAGGTTCTGGTTTTGCTGGGC
TCGCGAGTCTGTTGAGCTGGGCAGTGCGTTCAGCTGCTGATCCTTGGAGA
TCTGCGATAGGCGGGACCAGAGCCGTCTGTTCTCGTTGGATACCATGCCC
ATGTGCTCCTCCAGCTGCTCCTTTTGGCGCTGCAGCTCAGAGACCTGTGC
TTTCAGAGAGAGGACGTCCCCAGTGACCCCGATTTCG
BS03872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12114-PA | 1095 | CG12114-RA | 225..1095 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 341..1211 | 887..17 | 4340 | 99.9 | Minus |
spn-F-RA | 1465 | CG12114-RA | 341..1211 | 887..17 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255467..31255969 | 887..385 | 2500 | 99.8 | Minus |
3R | 32079331 | 3R | 31256036..31256405 | 386..17 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:19:10 has no hits.
BS03872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:50 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 225..1095 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:09 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 225..1095 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:47 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 341..1211 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:25 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 341..1211 | 17..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:25 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255467..31255969 | 385..887 | 99 | -> | Minus |
3R | 31256038..31256405 | 17..384 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:47 Download gff for
BS03872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27081189..27081691 | 385..887 | 99 | -> | Minus |
arm_3R | 27081760..27082127 | 17..384 | 100 | | Minus |
BS03872.5prime Sequence
879 bp (779 high quality bases) assembled on 2005-12-01
> BS03872.5prime
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCAC
BS03872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12114-PA | 1095 | CG12114-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 117..979 | 17..879 | 4315 | 100 | Plus |
spn-F-RA | 1465 | CG12114-RA | 117..979 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255243..31255969 | 17..743 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 31256036..31256173 | 742..879 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:29:03 has no hits.
BS03872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:51 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:11 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:38 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 115..979 | 14..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:25 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 115..979 | 14..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:25 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255241..31255969 | 14..743 | 99 | -> | Plus |
3R | 31256038..31256173 | 744..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:38 Download gff for
BS03872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27080963..27081691 | 14..743 | 99 | -> | Plus |
arm_3R | 27081760..27081895 | 744..879 | 100 | | Plus |
BS03872.complete Sequence
1127 bp (1127 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634805
> BS03872.complete
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAA
CATAATACAAGAGAAAATCAAAGCAGATGCAGCCGACGCAATGGAGAAGA
CCTGCCCTATGTGCGGCAAGCAGTACTCCAGCCAAGTGTCCTTCAATGCG
TTCCGCGAGCACGTCGAGATGCACTTCATCGACGATGCACTGGAACTGGA
GTCGGAGAACAGCATTGAGCGCCAGTTTGAGTTCGTTTCCCATGCTGTGG
GTGACTTCTGAAAGCTTTCTAGACCAT
BS03872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1131 | CG12114-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
spn-F-RA | 1095 | CG12114-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 117..1211 | 17..1111 | 5475 | 100 | Plus |
spn-F-RA | 1465 | CG12114-RA | 117..1211 | 17..1111 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255243..31255969 | 17..743 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 31256036..31256405 | 742..1111 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:50:06 has no hits.
BS03872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:19 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:03 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 100..1196 | 14..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:22 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 117..1210 | 17..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:20 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 100..1196 | 14..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:18 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 117..1210 | 17..1110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:18 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255243..31255969 | 17..743 | 100 | -> | Plus |
3R | 31256038..31256404 | 744..1110 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:22 Download gff for
BS03872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27080965..27081691 | 17..743 | 100 | -> | Plus |
arm_3R | 27081760..27082126 | 744..1110 | 100 | | Plus |
BS03872.pep Sequence
Translation from 16 to 1110
> BS03872.pep
MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR
VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL
EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF
TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET
TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC
AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK
IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI
ERQFEFVSHAVGDF*
BS03872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-PA | 364 | CG12114-PA | 1..364 | 1..364 | 1838 | 100 | Plus |
spn-F-PB | 376 | CG12114-PB | 1..364 | 1..364 | 1838 | 100 | Plus |