Clone Sequence Records
BS03874.3prime Sequence
852 bp (813 high quality bases) assembled on 2005-12-01
> BS03874.3prime
ATGGTCTAGAAAGCTTTTATTGTGAGGGCGAGAACTCAGTGGGCGCCAGG
ACACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTC
ATCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTT
GCAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATC
TGCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGAT
GGCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTC
GGTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGC
GGCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAA
CTTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGT
CTTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGG
TGCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAA
TTCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTT
TGTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTA
TGAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTC
CTTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTG
AATCGTTGCGGCTCGGAGTGGTGGACAGAGAGCGGACAGCGTTGTTGTTG
CTTTTGCCGACGGCCAATAGATTACGTAGCTTAAGCATGTCGACTGATAA
CT
BS03874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 1..822 | 838..17 | 4110 | 100 | Minus |
CG9212-PA | 822 | Nipsnap-RA | 1..822 | 838..17 | 4110 | 100 | Minus |
CG9212-PC | 822 | Nipsnap-RC | 1..822 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1022 | 838..17 | 4110 | 100 | Minus |
Nipsnap-RC | 1283 | CG9212-RC | 107..928 | 838..17 | 4110 | 100 | Minus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1047 | 838..17 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 309..602 | 1470 | 100 | Plus |
X | 23542271 | X | 16071721..16071901 | 603..783 | 905 | 100 | Plus |
X | 23542271 | X | 16070720..16070868 | 17..165 | 745 | 100 | Plus |
X | 23542271 | X | 16071033..16071178 | 164..309 | 730 | 100 | Plus |
X | 23542271 | X | 16073027..16073082 | 783..838 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:37:40 has no hits.
BS03874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:52 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PA | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:12 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:18 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 96..933 | 13..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:11 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 215..1052 | 13..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:11 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16070715..16070868 | 13..165 | 98 | <- | Plus |
X | 16071035..16071177 | 166..308 | 100 | <- | Plus |
X | 16071238..16071531 | 309..602 | 100 | <- | Plus |
X | 16071721..16071900 | 603..782 | 100 | <- | Plus |
X | 16073027..16073093 | 783..848 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:18 Download gff for
BS03874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964748..15964901 | 13..165 | 98 | <- | Plus |
arm_X | 15965068..15965210 | 166..308 | 100 | <- | Plus |
arm_X | 15965271..15965564 | 309..602 | 100 | <- | Plus |
arm_X | 15965754..15965933 | 603..782 | 100 | <- | Plus |
arm_X | 15967060..15967126 | 783..848 | 94 | | Plus |
BS03874.5prime Sequence
852 bp (851 high quality bases) assembled on 2005-11-29
> BS03874.5prime
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAAAAGCTTTCTAGA
CC
BS03874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
CG9212-PA | 822 | Nipsnap-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
CG9212-PC | 822 | Nipsnap-RC | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1022 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RC | 1283 | CG9212-RC | 107..928 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1047 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 546..253 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 252..72 | 905 | 100 | Minus |
X | 23542271 | X | 16070720..16070868 | 838..690 | 745 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 691..546 | 730 | 100 | Minus |
X | 23542271 | X | 16073027..16073082 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:35:15 has no hits.
BS03874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:53 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:13 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:27 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 96..933 | 7..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:33 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 215..1052 | 7..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:33 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16071035..16071177 | 547..689 | 100 | <- | Minus |
X | 16070715..16070868 | 690..842 | 98 | <- | Minus |
X | 16071238..16071531 | 253..546 | 100 | <- | Minus |
X | 16071721..16071900 | 73..252 | 100 | <- | Minus |
X | 16073027..16073093 | 7..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:27 Download gff for
BS03874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964748..15964901 | 690..842 | 98 | <- | Minus |
arm_X | 15965068..15965210 | 547..689 | 100 | <- | Minus |
arm_X | 15965271..15965564 | 253..546 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 73..252 | 100 | <- | Minus |
arm_X | 15967060..15967126 | 7..72 | 94 | | Minus |
BS03874.complete Sequence
854 bp (854 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634806
> BS03874.complete
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAAAAGCTTTCTAGA
CCAT
BS03874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 822 | CG9212-PF | 1..822 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RC | 822 | CG9212-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RA | 822 | CG9212-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1022 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RC | 1283 | CG9212-RC | 107..928 | 17..838 | 4110 | 100 | Plus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1047 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 546..253 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 252..72 | 905 | 100 | Minus |
X | 23542271 | X | 16070720..16070868 | 838..690 | 745 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 691..546 | 730 | 100 | Minus |
X | 23542271 | X | 16073027..16073082 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:13:39 has no hits.
BS03874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:21 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:05 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 94..931 | 7..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:04 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 107..926 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:21 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 94..931 | 7..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:44 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 226..1045 | 17..836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:44 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16070722..16070868 | 690..836 | 100 | <- | Minus |
X | 16071035..16071177 | 547..689 | 100 | <- | Minus |
X | 16071238..16071531 | 253..546 | 100 | <- | Minus |
X | 16071721..16071900 | 73..252 | 100 | <- | Minus |
X | 16073027..16073082 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:04 Download gff for
BS03874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964755..15964901 | 690..836 | 100 | <- | Minus |
arm_X | 15965068..15965210 | 547..689 | 100 | <- | Minus |
arm_X | 15965271..15965564 | 253..546 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 73..252 | 100 | <- | Minus |
arm_X | 15967060..15967115 | 17..72 | 100 | | Minus |
BS03874.pep Sequence
Translation from 16 to 837
> BS03874.pep
MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS
RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS
WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS
RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR
KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA
YTVPLIREMHCRVLAPTEFSPSQ*
BS03874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-PF | 273 | CG9212-PF | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PC | 273 | CG9212-PC | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PA | 273 | CG9212-PA | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PB | 273 | CG9212-PB | 1..273 | 1..273 | 1472 | 100 | Plus |