Clone BS03874 Report

Search the DGRC for BS03874

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptNipsnap-RA
Protein status:BS03874.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03874.3prime Sequence

852 bp (813 high quality bases) assembled on 2005-12-01

> BS03874.3prime
ATGGTCTAGAAAGCTTTTATTGTGAGGGCGAGAACTCAGTGGGCGCCAGG
ACACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTC
ATCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTT
GCAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATC
TGCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGAT
GGCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTC
GGTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGC
GGCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAA
CTTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGT
CTTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGG
TGCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAA
TTCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTT
TGTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTA
TGAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTC
CTTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTG
AATCGTTGCGGCTCGGAGTGGTGGACAGAGAGCGGACAGCGTTGTTGTTG
CTTTTGCCGACGGCCAATAGATTACGTAGCTTAAGCATGTCGACTGATAA
CT

BS03874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 1..822 838..17 4110 100 Minus
CG9212-PA 822 Nipsnap-RA 1..822 838..17 4110 100 Minus
CG9212-PC 822 Nipsnap-RC 1..822 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1022 838..17 4110 100 Minus
Nipsnap-RC 1283 CG9212-RC 107..928 838..17 4110 100 Minus
Nipsnap-RA 1402 CG9212-RA 226..1047 838..17 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 309..602 1470 100 Plus
X 23542271 X 16071721..16071901 603..783 905 100 Plus
X 23542271 X 16070720..16070868 17..165 745 100 Plus
X 23542271 X 16071033..16071178 164..309 730 100 Plus
X 23542271 X 16073027..16073082 783..838 280 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:37:40 has no hits.

BS03874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:52 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PA 1..822 17..838 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:12 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 1..822 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:18 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 96..933 13..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:11 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 215..1052 13..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:11 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16070715..16070868 13..165 98 <- Plus
X 16071035..16071177 166..308 100 <- Plus
X 16071238..16071531 309..602 100 <- Plus
X 16071721..16071900 603..782 100 <- Plus
X 16073027..16073093 783..848 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:18 Download gff for BS03874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964748..15964901 13..165 98 <- Plus
arm_X 15965068..15965210 166..308 100 <- Plus
arm_X 15965271..15965564 309..602 100 <- Plus
arm_X 15965754..15965933 603..782 100 <- Plus
arm_X 15967060..15967126 783..848 94   Plus

BS03874.5prime Sequence

852 bp (851 high quality bases) assembled on 2005-11-29

> BS03874.5prime
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAAAAGCTTTCTAGA
CC

BS03874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 1..822 17..838 4110 100 Plus
CG9212-PA 822 Nipsnap-RA 1..822 17..838 4110 100 Plus
CG9212-PC 822 Nipsnap-RC 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1022 17..838 4110 100 Plus
Nipsnap-RC 1283 CG9212-RC 107..928 17..838 4110 100 Plus
Nipsnap-RA 1402 CG9212-RA 226..1047 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 546..253 1470 100 Minus
X 23542271 X 16071721..16071901 252..72 905 100 Minus
X 23542271 X 16070720..16070868 838..690 745 100 Minus
X 23542271 X 16071033..16071178 691..546 730 100 Minus
X 23542271 X 16073027..16073082 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:35:15 has no hits.

BS03874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:53 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:13 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:27 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 96..933 7..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:33 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 215..1052 7..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:33 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16071035..16071177 547..689 100 <- Minus
X 16070715..16070868 690..842 98 <- Minus
X 16071238..16071531 253..546 100 <- Minus
X 16071721..16071900 73..252 100 <- Minus
X 16073027..16073093 7..72 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:27 Download gff for BS03874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964748..15964901 690..842 98 <- Minus
arm_X 15965068..15965210 547..689 100 <- Minus
arm_X 15965271..15965564 253..546 100 <- Minus
arm_X 15965754..15965933 73..252 100 <- Minus
arm_X 15967060..15967126 7..72 94   Minus

BS03874.complete Sequence

854 bp (854 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634806

> BS03874.complete
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAAAAGCTTTCTAGA
CCAT

BS03874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 822 CG9212-PF 1..822 17..838 4110 100 Plus
Nipsnap-RC 822 CG9212-PC 1..822 17..838 4110 100 Plus
Nipsnap-RA 822 CG9212-PA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1022 17..838 4110 100 Plus
Nipsnap-RC 1283 CG9212-RC 107..928 17..838 4110 100 Plus
Nipsnap-RA 1402 CG9212-RA 226..1047 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 546..253 1470 100 Minus
X 23542271 X 16071721..16071901 252..72 905 100 Minus
X 23542271 X 16070720..16070868 838..690 745 100 Minus
X 23542271 X 16071033..16071178 691..546 730 100 Minus
X 23542271 X 16073027..16073082 72..17 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:13:39 has no hits.

BS03874.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:21 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:05 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 94..931 7..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:04 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 107..926 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:21 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 94..931 7..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:44 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 226..1045 17..836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:44 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
X 16070722..16070868 690..836 100 <- Minus
X 16071035..16071177 547..689 100 <- Minus
X 16071238..16071531 253..546 100 <- Minus
X 16071721..16071900 73..252 100 <- Minus
X 16073027..16073082 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:04 Download gff for BS03874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964755..15964901 690..836 100 <- Minus
arm_X 15965068..15965210 547..689 100 <- Minus
arm_X 15965271..15965564 253..546 100 <- Minus
arm_X 15965754..15965933 73..252 100 <- Minus
arm_X 15967060..15967115 17..72 100   Minus

BS03874.pep Sequence

Translation from 16 to 837

> BS03874.pep
MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS
RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS
WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS
RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR
KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA
YTVPLIREMHCRVLAPTEFSPSQ*

BS03874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-PF 273 CG9212-PF 1..273 1..273 1472 100 Plus
Nipsnap-PC 273 CG9212-PC 1..273 1..273 1472 100 Plus
Nipsnap-PA 273 CG9212-PA 1..273 1..273 1472 100 Plus
Nipsnap-PB 273 CG9212-PB 1..273 1..273 1472 100 Plus