Clone Sequence Records
BS03876.3prime Sequence
858 bp (852 high quality bases) assembled on 2005-12-01
> BS03876.3prime
ATGGTCTAGAAAGCTTCTAGCAGAACTCGGTCTGATCCCCGCCGTTGCGG
AGGACCGCTGAGACCCGCCACGTCATCGACTCGTAGAGCATCTCAATTTT
GTCCACCATGTCCTGGTCGCTGTGCCAGACGTCGTACAAGACGGCTCGAA
ACTCGCTGACATTTTTGGGCGCCTGATTCTGAATCCTCGGCTGGATGATG
GCCATCAATTGCTCGAGGAGATTGAGGTCATTGCAGACACTGCCCTCCGG
TCCCATCAGCGAGTCAAGGAAGATCTCCTTTGGCGGCGTTGATTCGTCGA
CGAATTTAAGATCGTCCATGTTGAAGATGTTGCGCCAGTCGCGCACGGTC
CAATCCTGATGGGCGGTGGCCCAGGCCAACCTCCTTTTTTTCGCCCCCTC
ACTGAGGCCGAAAGTGCTGGGCTCCTTCGGCTGTGGCGATCCTCTCGGTT
GCCGTATGCCTTTGGAGCGAATCTCGCTGATCCTGCGCTGCAAGGTCCTG
CGGCTGACCTCTATGCCGTGTCGGGCCAACTCCCGCTGCACATCGATGGA
GGTGTAGTGCGGATTGTCGCTCAGCATTTGCTCGACAATTTGCCGGTTCT
CCAGGACCTTGGGTCTGCCAACATCGCGCTTCTTTTCCTCCTCCTGCGCA
ACCGCCACGGGCGCCGCTGTTTTCAGTTTTTGCGGCAACCTCAGCGTGGC
AGTCTTCCCCTCGAGCAGCTCACACTCACGAATGCAGCTTATCACGCTCT
CCACGTCGCACTCCAGGATCTGGGCTATCTCCTCACAGCTGTTCGAGCCC
TTCAGCGCCTTCACAATACTTCGAACTTCGGGAGCGAGAACCATGTCGAC
TGATAACT
BS03876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-PA | 828 | CG4570-RA | 1..828 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-RA | 1260 | CG4570-RA | 207..1039 | 849..17 | 4150 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10857013..10857845 | 849..17 | 4150 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:44:37 has no hits.
BS03876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:54 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-PA | 1..828 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:14 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-PA | 1..828 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:25 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 201..1046 | 12..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:50 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 201..1046 | 12..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:50 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10857007..10857852 | 12..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:25 Download gff for
BS03876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6682729..6683574 | 12..858 | 99 | | Minus |
BS03876.5prime Sequence
811 bp (810 high quality bases) assembled on 2005-11-29
> BS03876.5prime
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTC
BS03876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-PA | 828 | CG4570-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-RA | 1260 | CG4570-RA | 207..1006 | 12..811 | 3985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10857013..10857812 | 12..811 | 3985 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:07 has no hits.
BS03876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:55 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:16 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:08 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 199..1006 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:24 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 199..1006 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:24 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10857005..10857812 | 1..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:08 Download gff for
BS03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6682727..6683534 | 1..811 | 99 | | Plus |
BS03876.complete Sequence
860 bp (860 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634807
> BS03876.complete
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTCCGCAACGGCGGGGATCAGACCGAGTTCTGCTAGAAGCTT
TCTAGACCAT
BS03876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-RA | 828 | CG4570-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-RA | 1260 | CG4570-RA | 207..1039 | 12..844 | 4150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10857013..10857845 | 12..844 | 4150 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:11:11 has no hits.
BS03876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:22 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:07 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 215..1062 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:33 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 212..1039 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:22 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 215..1062 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:44 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4570-RA | 212..1039 | 17..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:44 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10857018..10857845 | 17..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:33 Download gff for
BS03876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6682740..6683567 | 17..844 | 100 | | Plus |
BS03876.pep Sequence
Translation from 16 to 843
> BS03876.pep
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFC*
BS03876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4570-PA | 275 | CG4570-PA | 1..275 | 1..275 | 1420 | 100 | Plus |
