Clone Sequence Records
BS03877.3prime Sequence
885 bp (800 high quality bases) assembled on 2005-12-01
> BS03877.3prime
ATGGTCTAGAAAGCTTCTACTCTTGTATATCCATTTCCTGAGTTGCCTGC
TGCATGTCGTGCAATTGTGCCCGCAAATCTTCGGGCAAAGTGTGCTCGTT
CAAGGCACTAGGGTCTTCACCATCCACGACAATCTCCTCTGGATCTGGGG
CTCGTGGCAAAAAGTCGGCATCTGGGAACATTTTGCCAAATATGTCGCGA
GCATTGGCAATGGCCGCGTCATAATCCAGCTCGTAGGTAGGTGGATCGGT
GTAGTAAATATGCTCGGCAGCGGGACTTTTACTAGACTGGGCAGCAATTG
TGAAGTATGAGCTAAATATTATTTGTGCGTCTGATTGATCGAAGAGTTGG
CTAGTGAAAATGGCTAGATCAGACGCTGGATCCTCGCTCAACGCTGGCGT
GGTCAGATGGAAGATATATAAACCCTCGGGACAGGCTCCCGTGTAGTGCG
ACAGTTGTATTAGGAAGGCTTCCCGTCCACCTTCATTGTCAAGTAGTCGA
AGAAGATTTACACCACCACCTCCCTTGTTCAGCTCCTCATTGCCCAGGGG
ACTGGACGATATGAACAAGCCACGTGAGATGTGCGGCTTCAACTCGATGC
CCTTTGAAACTGGTGTATAGCCAGGGGCAGAGACCACATTCTTGGCACGC
AAAGTTTTCCCTGCGCTGCTCAGCAGGAACTCATTCGAATTGGAATCTAA
GGCAATGTCGTCAACGGCTCGCTTTAGGCAGTAAATGCCACCATAAACAG
CGCACAAACGGCAGAAGCACTGCGGCAATTCCCCGCAGCCATACATGGGA
AAGAGAAAGGGTGTGTTGCCATAGCGGCCCAGACTGCCCAGAAATCGTTG
TGTGCGCTGCATACCCTCCTCGAAGCTGGTGCTGG
BS03877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8432-PA | 1536 | Rep-RA | 668..1536 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 805..1673 | 885..17 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492950..19493417 | 885..418 | 2340 | 100 | Minus |
2R | 25286936 | 2R | 19493475..19493875 | 417..17 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:36:53 has no hits.
BS03877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:56 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-PA | 668..1536 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:17 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8432-PA | 668..1536 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:12 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 805..1673 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:58 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 805..1673 | 17..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:58 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492950..19493417 | 418..885 | 100 | -> | Minus |
2R | 19493475..19493875 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:12 Download gff for
BS03877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15380455..15380922 | 418..885 | 100 | -> | Minus |
arm_2R | 15380980..15381380 | 17..417 | 100 | | Minus |
BS03877.5prime Sequence
922 bp (840 high quality bases) assembled on 2005-12-01
> BS03877.5prime
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTTCCATTCGAATGAGTTCCTGCTGAG
CAGCGCAAGGAAAACTTTGCGT
BS03877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8432-PA | 1536 | Rep-RA | 1..906 | 17..922 | 4455 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 136..1043 | 15..922 | 4495 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492329..19493188 | 63..922 | 4255 | 99.7 | Plus |
2R | 25286936 | 2R | 19492222..19492273 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:53:57 has no hits.
BS03877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:57 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:18 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8432-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:42:53 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 136..1043 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:04 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 136..1043 | 15..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:04 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492222..19492272 | 15..65 | 100 | -> | Plus |
2R | 19492332..19493188 | 66..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:42:53 Download gff for
BS03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15379727..15379777 | 15..65 | 100 | -> | Plus |
arm_2R | 15379837..15380693 | 66..922 | 99 | | Plus |
BS03877.complete Sequence
1568 bp (1568 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634808
> BS03877.complete
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTCCAATTCGAATGAGTTCCTGCTGAG
CAGCGCAGGGAAAACTTTGCGTGCCAAGAATGTGGTCTCTGCCCCTGGCT
ATACACCAGTTTCAAAGGGCATCGAGTTGAAGCCGCACATCTCACGTGGC
TTGTTCATATCGTCCAGTCCCCTGGGCAATGAGGAGCTGAACAAGGGAGG
TGGTGGTGTAAATCTTCTTCGACTACTTGACAATGAAGGTGGACGGGAAG
CCTTCCTAATACAACTGTCGCACTACACGGGAGCCTGTCCCGAGGGTTTA
TATATCTTCCATCTGACCACGCCAGCGTTGAGCGAGGATCCAGCGTCTGA
TCTAGCCATTTTCACTAGCCAACTCTTCGATCAATCAGACGCACAAATAA
TATTTAGCTCATACTTCACAATTGCTGCCCAGTCTAGTAAAAGTCCCGCT
GCCGAGCATATTTACTACACCGATCCACCTACCTACGAGCTGGATTATGA
CGCGGCCATTGCCAATGCTCGCGACATATTTGGCAAAATGTTCCCAGATG
CCGACTTTTTGCCACGAGCCCCAGATCCAGAGGAGATTGTCGTGGATGGT
GAAGACCCTAGTGCCTTGAACGAGCACACTTTGCCCGAAGATTTGCGGGC
ACAATTGCACGACATGCAGCAGGCAACTCAGGAAATGGATATACAAGAGT
AGAAGCTTTCTAGACCAT
BS03877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1536 | CG8432-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 136..1673 | 15..1552 | 7690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492329..19493417 | 63..1151 | 5445 | 100 | Plus |
2R | 25286936 | 2R | 19493475..19493875 | 1152..1552 | 2005 | 100 | Plus |
2R | 25286936 | 2R | 19492222..19492273 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:40:38 has no hits.
BS03877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:23 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 1..1536 | 17..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:09 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 132..1669 | 15..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:29 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 143..1673 | 22..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:23 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 132..1669 | 15..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:30 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 143..1673 | 22..1552 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:30 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492229..19492272 | 22..65 | 100 | -> | Plus |
2R | 19492332..19493417 | 66..1151 | 100 | -> | Plus |
2R | 19493475..19493875 | 1152..1552 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:29 Download gff for
BS03877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15379734..15379777 | 22..65 | 100 | -> | Plus |
arm_2R | 15379837..15380922 | 66..1151 | 100 | -> | Plus |
arm_2R | 15380980..15381380 | 1152..1552 | 100 | | Plus |
BS03877.pep Sequence
Translation from 16 to 1551
> BS03877.pep
MLDDLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSF
SMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSR
RFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVP
CSRSDVFNTKTLTIVEKRLLMKFLTACNDYGEDKCNEDSLEFRGRTFLEY
LQAQRVTEKISSCVMQAIAMCGPSTSFEEGMQRTQRFLGSLGRYGNTPFL
FPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKT
LRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGNEELNKGGGGVNL
LRLLDNEGGREAFLIQLSHYTGACPEGLYIFHLTTPALSEDPASDLAIFT
SQLFDQSDAQIIFSSYFTIAAQSSKSPAAEHIYYTDPPTYELDYDAAIAN
ARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHDM
QQATQEMDIQE*
BS03877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-PA | 511 | CG8432-PA | 1..511 | 1..511 | 2678 | 100 | Plus |
Gdi-PC | 443 | CG4422-PC | 3..366 | 7..396 | 351 | 26.1 | Plus |
Gdi-PB | 443 | CG4422-PB | 3..366 | 7..396 | 351 | 26.1 | Plus |
Gdi-PA | 443 | CG4422-PA | 3..366 | 7..396 | 351 | 26.1 | Plus |