Clone BS03877 Report

Search the DGRC for BS03877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptRep-RA
Protein status:BS03877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03877.3prime Sequence

885 bp (800 high quality bases) assembled on 2005-12-01

> BS03877.3prime
ATGGTCTAGAAAGCTTCTACTCTTGTATATCCATTTCCTGAGTTGCCTGC
TGCATGTCGTGCAATTGTGCCCGCAAATCTTCGGGCAAAGTGTGCTCGTT
CAAGGCACTAGGGTCTTCACCATCCACGACAATCTCCTCTGGATCTGGGG
CTCGTGGCAAAAAGTCGGCATCTGGGAACATTTTGCCAAATATGTCGCGA
GCATTGGCAATGGCCGCGTCATAATCCAGCTCGTAGGTAGGTGGATCGGT
GTAGTAAATATGCTCGGCAGCGGGACTTTTACTAGACTGGGCAGCAATTG
TGAAGTATGAGCTAAATATTATTTGTGCGTCTGATTGATCGAAGAGTTGG
CTAGTGAAAATGGCTAGATCAGACGCTGGATCCTCGCTCAACGCTGGCGT
GGTCAGATGGAAGATATATAAACCCTCGGGACAGGCTCCCGTGTAGTGCG
ACAGTTGTATTAGGAAGGCTTCCCGTCCACCTTCATTGTCAAGTAGTCGA
AGAAGATTTACACCACCACCTCCCTTGTTCAGCTCCTCATTGCCCAGGGG
ACTGGACGATATGAACAAGCCACGTGAGATGTGCGGCTTCAACTCGATGC
CCTTTGAAACTGGTGTATAGCCAGGGGCAGAGACCACATTCTTGGCACGC
AAAGTTTTCCCTGCGCTGCTCAGCAGGAACTCATTCGAATTGGAATCTAA
GGCAATGTCGTCAACGGCTCGCTTTAGGCAGTAAATGCCACCATAAACAG
CGCACAAACGGCAGAAGCACTGCGGCAATTCCCCGCAGCCATACATGGGA
AAGAGAAAGGGTGTGTTGCCATAGCGGCCCAGACTGCCCAGAAATCGTTG
TGTGCGCTGCATACCCTCCTCGAAGCTGGTGCTGG

BS03877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8432-PA 1536 Rep-RA 668..1536 885..17 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rep-RA 1923 CG8432-RA 805..1673 885..17 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19492950..19493417 885..418 2340 100 Minus
2R 25286936 2R 19493475..19493875 417..17 2005 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:36:53 has no hits.

BS03877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:56 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
Rep-PA 668..1536 17..885 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:17 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8432-PA 668..1536 17..885 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:12 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 805..1673 17..885 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:58 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 805..1673 17..885 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:58 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19492950..19493417 418..885 100 -> Minus
2R 19493475..19493875 17..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:12 Download gff for BS03877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15380455..15380922 418..885 100 -> Minus
arm_2R 15380980..15381380 17..417 100   Minus

BS03877.5prime Sequence

922 bp (840 high quality bases) assembled on 2005-12-01

> BS03877.5prime
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTTCCATTCGAATGAGTTCCTGCTGAG
CAGCGCAAGGAAAACTTTGCGT

BS03877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8432-PA 1536 Rep-RA 1..906 17..922 4455 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rep-RA 1923 CG8432-RA 136..1043 15..922 4495 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19492329..19493188 63..922 4255 99.7 Plus
2R 25286936 2R 19492222..19492273 15..66 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:53:57 has no hits.

BS03877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:57 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
Rep-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:18 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8432-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:42:53 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 136..1043 15..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:04 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 136..1043 15..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:04 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19492222..19492272 15..65 100 -> Plus
2R 19492332..19493188 66..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:42:53 Download gff for BS03877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15379727..15379777 15..65 100 -> Plus
arm_2R 15379837..15380693 66..922 99   Plus

BS03877.complete Sequence

1568 bp (1568 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634808

> BS03877.complete
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTCCAATTCGAATGAGTTCCTGCTGAG
CAGCGCAGGGAAAACTTTGCGTGCCAAGAATGTGGTCTCTGCCCCTGGCT
ATACACCAGTTTCAAAGGGCATCGAGTTGAAGCCGCACATCTCACGTGGC
TTGTTCATATCGTCCAGTCCCCTGGGCAATGAGGAGCTGAACAAGGGAGG
TGGTGGTGTAAATCTTCTTCGACTACTTGACAATGAAGGTGGACGGGAAG
CCTTCCTAATACAACTGTCGCACTACACGGGAGCCTGTCCCGAGGGTTTA
TATATCTTCCATCTGACCACGCCAGCGTTGAGCGAGGATCCAGCGTCTGA
TCTAGCCATTTTCACTAGCCAACTCTTCGATCAATCAGACGCACAAATAA
TATTTAGCTCATACTTCACAATTGCTGCCCAGTCTAGTAAAAGTCCCGCT
GCCGAGCATATTTACTACACCGATCCACCTACCTACGAGCTGGATTATGA
CGCGGCCATTGCCAATGCTCGCGACATATTTGGCAAAATGTTCCCAGATG
CCGACTTTTTGCCACGAGCCCCAGATCCAGAGGAGATTGTCGTGGATGGT
GAAGACCCTAGTGCCTTGAACGAGCACACTTTGCCCGAAGATTTGCGGGC
ACAATTGCACGACATGCAGCAGGCAACTCAGGAAATGGATATACAAGAGT
AGAAGCTTTCTAGACCAT

BS03877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rep-RA 1536 CG8432-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rep-RA 1923 CG8432-RA 136..1673 15..1552 7690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19492329..19493417 63..1151 5445 100 Plus
2R 25286936 2R 19493475..19493875 1152..1552 2005 100 Plus
2R 25286936 2R 19492222..19492273 15..66 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:40:38 has no hits.

BS03877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:23 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 1..1536 17..1552 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:09 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 132..1669 15..1552 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:29 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 143..1673 22..1552 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:23 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 132..1669 15..1552 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:30 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
Rep-RA 143..1673 22..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:30 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19492229..19492272 22..65 100 -> Plus
2R 19492332..19493417 66..1151 100 -> Plus
2R 19493475..19493875 1152..1552 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:29 Download gff for BS03877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15379734..15379777 22..65 100 -> Plus
arm_2R 15379837..15380922 66..1151 100 -> Plus
arm_2R 15380980..15381380 1152..1552 100   Plus

BS03877.pep Sequence

Translation from 16 to 1551

> BS03877.pep
MLDDLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSF
SMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSR
RFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVP
CSRSDVFNTKTLTIVEKRLLMKFLTACNDYGEDKCNEDSLEFRGRTFLEY
LQAQRVTEKISSCVMQAIAMCGPSTSFEEGMQRTQRFLGSLGRYGNTPFL
FPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKT
LRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGNEELNKGGGGVNL
LRLLDNEGGREAFLIQLSHYTGACPEGLYIFHLTTPALSEDPASDLAIFT
SQLFDQSDAQIIFSSYFTIAAQSSKSPAAEHIYYTDPPTYELDYDAAIAN
ARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHDM
QQATQEMDIQE*

BS03877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rep-PA 511 CG8432-PA 1..511 1..511 2678 100 Plus
Gdi-PC 443 CG4422-PC 3..366 7..396 351 26.1 Plus
Gdi-PB 443 CG4422-PB 3..366 7..396 351 26.1 Plus
Gdi-PA 443 CG4422-PA 3..366 7..396 351 26.1 Plus