Clone BS03879 Report

Search the DGRC for BS03879

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptIr76a-RC
Protein status:BS03879.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03879.3prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-01

> BS03879.3prime
ATGGTCTAGAAAGCTTCTACCCCTGTCCCCTCCAGAGTTCTCCGAGAAAT
GTCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAAT
AAAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCT
CAGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCG
ATCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAAT
GAAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCA
CCGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGG
GCATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCG
CTCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAAT
TGGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCG
GCCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCA
AATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTA
AAGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTC
AATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATA
CGAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTAC
TGA

BS03879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 812..1548 753..17 3685 100 Minus
CG8533-PA 1548 CG8533-RA 812..1548 753..17 3685 100 Minus
CG8533-PC 1302 CG8533-RC 566..1302 753..17 3685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 1205..1941 753..17 3685 100 Minus
Ir76a-RD 1735 CG42584-RD 949..1685 753..17 3685 100 Minus
Ir76a-RA 1722 CG42584-RA 936..1672 753..17 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802898..19803377 496..17 2400 100 Minus
3L 28110227 3L 19802584..19802840 753..497 1285 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:57:59 has no hits.

BS03879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:00 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 567..1302 17..752 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:23 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 567..1302 17..752 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:39 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 937..1675 10..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:38 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 937..1675 10..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:38 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19802585..19802840 497..752 100 -> Minus
3L 19802898..19803380 10..496 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:39 Download gff for BS03879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19795685..19795940 497..752 100 -> Minus
arm_3L 19795998..19796480 10..496 99   Minus

BS03879.5prime Sequence

901 bp (753 high quality bases) assembled on 2005-12-01

> BS03879.5prime
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCCACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTATATCCGCCTTC
T

BS03879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 247..1119 17..889 4340 99.8 Plus
CG8533-PA 1548 CG8533-RA 247..1119 17..889 4340 99.8 Plus
CG8533-PC 1302 CG8533-RC 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 640..1525 17..901 4390 99.8 Plus
Ir76a-RA 1722 CG42584-RA 371..1256 17..901 4390 99.8 Plus
Ir76a-RB 1761 CG8533-RB 410..1295 17..901 4390 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802335..19802840 333..838 2515 99.8 Plus
3L 28110227 3L 19801987..19802114 97..224 625 99.2 Plus
3L 28110227 3L 19802161..19802277 220..336 570 99.1 Plus
3L 28110227 3L 19801845..19801929 17..101 425 100 Plus
3L 28110227 3L 19802898..19802961 839..901 270 98.4 Plus
Blast to na_te.dros performed on 2015-02-10 00:34:56 has no hits.

BS03879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:01 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 1..886 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:24 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 1..886 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:41 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 404..1295 10..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:59 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 404..1295 10..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:59 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19801839..19801928 10..100 96 -> Plus
3L 19801991..19802114 101..224 100 -> Plus
3L 19802166..19802274 225..333 100 -> Plus
3L 19802336..19802840 334..838 99 -> Plus
3L 19802898..19802961 839..901 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:41 Download gff for BS03879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19795266..19795374 225..333 100 -> Plus
arm_3L 19794939..19795028 10..100 96 -> Plus
arm_3L 19795091..19795214 101..224 100 -> Plus
arm_3L 19795436..19795940 334..838 99 -> Plus
arm_3L 19795998..19796061 839..901 98   Plus

BS03879.complete Sequence

1334 bp (1334 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634809

> BS03879.complete
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTT
CTCGCACACGGAGCAAATGGGATTTGTCGTCGAGCGCCTTCAGTTTGGTC
ATTTGGGCAACACCGAGCTAATAGAAAACGATGCCCTAAAGCGGCTGAAA
CTTATGGTGGATGATATTTACTTTGCATTTACGGTGGCGTTTGTGCCGCG
ACTGTGGCCGCACTTAAATGCCTACAACGACTTCATTCTGGCTTGGCATT
CCTCGGGCTTTGACAAATTCTGGGAATGGAAGATCGCCGCCGAATACATG
AATGCGCACCGCCAAAATCGCATCGTGGCATCTGAGAAAACGAACCTAGA
TATAGGACCTGTTAAACTTGGCATTGATAATTTTATTGGCCTAATCCTGC
TTTGGTGCTTCGGCATGATTTGTAGCCTTCTGACATTTCTCGGAGAACTC
TGGAGGGGACAGGGGTAGAAGCTTTCTAGACCAT

BS03879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1941 CG42584-PE 640..1941 17..1318 6510 100 Plus
Ir76a-RA 1548 CG42584-PA 247..1548 17..1318 6510 100 Plus
Ir76a-RB 1548 CG42584-PB 247..1548 17..1318 6510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 640..1941 17..1318 6510 100 Plus
Ir76a-RA 1722 CG42584-RA 371..1672 17..1318 6510 100 Plus
Ir76a-RB 1761 CG8533-RB 410..1711 17..1318 6510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802335..19802840 333..838 2530 100 Plus
3L 28110227 3L 19802898..19803377 839..1318 2400 100 Plus
3L 28110227 3L 19801987..19802114 97..224 625 99.2 Plus
3L 28110227 3L 19802161..19802277 220..336 570 99.1 Plus
3L 28110227 3L 19801845..19801929 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:14:28 has no hits.

BS03879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:09 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RC 1..1302 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:50 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 438..1748 10..1325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:22 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 410..1711 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:09 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 438..1748 10..1325 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:50 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 410..1711 17..1318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:50 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801845..19801928 17..100 100 -> Plus
3L 19801991..19802114 101..224 100 -> Plus
3L 19802166..19802274 225..333 100 -> Plus
3L 19802336..19802840 334..838 100 -> Plus
3L 19802898..19803377 839..1318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:22 Download gff for BS03879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19794945..19795028 17..100 100 -> Plus
arm_3L 19795091..19795214 101..224 100 -> Plus
arm_3L 19795266..19795374 225..333 100 -> Plus
arm_3L 19795436..19795940 334..838 100 -> Plus
arm_3L 19795998..19796477 839..1318 100   Plus

BS03879.pep Sequence

Translation from 16 to 1317

> BS03879.pep
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQG*

BS03879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-PE 646 CG42584-PE 214..646 1..433 2306 100 Plus
Ir76a-PA 515 CG42584-PA 83..515 1..433 2306 100 Plus
Ir76a-PB 515 CG8533-PB 83..515 1..433 2306 100 Plus
Ir41a-PC 648 CG33492-PC 202..636 2..428 936 42.3 Plus
Ir92a-PC 678 CG15685-PC 237..669 3..428 402 25.6 Plus