Clone Sequence Records
BS03879.3prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-01
> BS03879.3prime
ATGGTCTAGAAAGCTTCTACCCCTGTCCCCTCCAGAGTTCTCCGAGAAAT
GTCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAAT
AAAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCT
CAGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCG
ATCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAAT
GAAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCA
CCGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGG
GCATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCG
CTCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAAT
TGGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCG
GCCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCA
AATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTA
AAGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTC
AATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATA
CGAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTAC
TGA
BS03879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 812..1548 | 753..17 | 3685 | 100 | Minus |
CG8533-PA | 1548 | CG8533-RA | 812..1548 | 753..17 | 3685 | 100 | Minus |
CG8533-PC | 1302 | CG8533-RC | 566..1302 | 753..17 | 3685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 1205..1941 | 753..17 | 3685 | 100 | Minus |
Ir76a-RD | 1735 | CG42584-RD | 949..1685 | 753..17 | 3685 | 100 | Minus |
Ir76a-RA | 1722 | CG42584-RA | 936..1672 | 753..17 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802898..19803377 | 496..17 | 2400 | 100 | Minus |
3L | 28110227 | 3L | 19802584..19802840 | 753..497 | 1285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:57:59 has no hits.
BS03879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:00 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 567..1302 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:23 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 567..1302 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:39 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 937..1675 | 10..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:38 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 937..1675 | 10..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:38 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19802585..19802840 | 497..752 | 100 | -> | Minus |
3L | 19802898..19803380 | 10..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:39 Download gff for
BS03879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19795685..19795940 | 497..752 | 100 | -> | Minus |
arm_3L | 19795998..19796480 | 10..496 | 99 | | Minus |
BS03879.5prime Sequence
901 bp (753 high quality bases) assembled on 2005-12-01
> BS03879.5prime
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCCACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTATATCCGCCTTC
T
BS03879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 247..1119 | 17..889 | 4340 | 99.8 | Plus |
CG8533-PA | 1548 | CG8533-RA | 247..1119 | 17..889 | 4340 | 99.8 | Plus |
CG8533-PC | 1302 | CG8533-RC | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 640..1525 | 17..901 | 4390 | 99.8 | Plus |
Ir76a-RA | 1722 | CG42584-RA | 371..1256 | 17..901 | 4390 | 99.8 | Plus |
Ir76a-RB | 1761 | CG8533-RB | 410..1295 | 17..901 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802335..19802840 | 333..838 | 2515 | 99.8 | Plus |
3L | 28110227 | 3L | 19801987..19802114 | 97..224 | 625 | 99.2 | Plus |
3L | 28110227 | 3L | 19802161..19802277 | 220..336 | 570 | 99.1 | Plus |
3L | 28110227 | 3L | 19801845..19801929 | 17..101 | 425 | 100 | Plus |
3L | 28110227 | 3L | 19802898..19802961 | 839..901 | 270 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:34:56 has no hits.
BS03879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:01 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 1..886 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:24 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 1..886 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:41 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 404..1295 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:59 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 404..1295 | 10..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:59 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19801839..19801928 | 10..100 | 96 | -> | Plus |
3L | 19801991..19802114 | 101..224 | 100 | -> | Plus |
3L | 19802166..19802274 | 225..333 | 100 | -> | Plus |
3L | 19802336..19802840 | 334..838 | 99 | -> | Plus |
3L | 19802898..19802961 | 839..901 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:41 Download gff for
BS03879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19795266..19795374 | 225..333 | 100 | -> | Plus |
arm_3L | 19794939..19795028 | 10..100 | 96 | -> | Plus |
arm_3L | 19795091..19795214 | 101..224 | 100 | -> | Plus |
arm_3L | 19795436..19795940 | 334..838 | 99 | -> | Plus |
arm_3L | 19795998..19796061 | 839..901 | 98 | | Plus |
BS03879.complete Sequence
1334 bp (1334 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634809
> BS03879.complete
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTT
CTCGCACACGGAGCAAATGGGATTTGTCGTCGAGCGCCTTCAGTTTGGTC
ATTTGGGCAACACCGAGCTAATAGAAAACGATGCCCTAAAGCGGCTGAAA
CTTATGGTGGATGATATTTACTTTGCATTTACGGTGGCGTTTGTGCCGCG
ACTGTGGCCGCACTTAAATGCCTACAACGACTTCATTCTGGCTTGGCATT
CCTCGGGCTTTGACAAATTCTGGGAATGGAAGATCGCCGCCGAATACATG
AATGCGCACCGCCAAAATCGCATCGTGGCATCTGAGAAAACGAACCTAGA
TATAGGACCTGTTAAACTTGGCATTGATAATTTTATTGGCCTAATCCTGC
TTTGGTGCTTCGGCATGATTTGTAGCCTTCTGACATTTCTCGGAGAACTC
TGGAGGGGACAGGGGTAGAAGCTTTCTAGACCAT
BS03879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1941 | CG42584-PE | 640..1941 | 17..1318 | 6510 | 100 | Plus |
Ir76a-RA | 1548 | CG42584-PA | 247..1548 | 17..1318 | 6510 | 100 | Plus |
Ir76a-RB | 1548 | CG42584-PB | 247..1548 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 640..1941 | 17..1318 | 6510 | 100 | Plus |
Ir76a-RA | 1722 | CG42584-RA | 371..1672 | 17..1318 | 6510 | 100 | Plus |
Ir76a-RB | 1761 | CG8533-RB | 410..1711 | 17..1318 | 6510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802335..19802840 | 333..838 | 2530 | 100 | Plus |
3L | 28110227 | 3L | 19802898..19803377 | 839..1318 | 2400 | 100 | Plus |
3L | 28110227 | 3L | 19801987..19802114 | 97..224 | 625 | 99.2 | Plus |
3L | 28110227 | 3L | 19802161..19802277 | 220..336 | 570 | 99.1 | Plus |
3L | 28110227 | 3L | 19801845..19801929 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:28 has no hits.
BS03879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:09 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RC | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:50 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RA | 438..1748 | 10..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:22 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 410..1711 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:09 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RA | 438..1748 | 10..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:50 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 410..1711 | 17..1318 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:50 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19801845..19801928 | 17..100 | 100 | -> | Plus |
3L | 19801991..19802114 | 101..224 | 100 | -> | Plus |
3L | 19802166..19802274 | 225..333 | 100 | -> | Plus |
3L | 19802336..19802840 | 334..838 | 100 | -> | Plus |
3L | 19802898..19803377 | 839..1318 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:22 Download gff for
BS03879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19794945..19795028 | 17..100 | 100 | -> | Plus |
arm_3L | 19795091..19795214 | 101..224 | 100 | -> | Plus |
arm_3L | 19795266..19795374 | 225..333 | 100 | -> | Plus |
arm_3L | 19795436..19795940 | 334..838 | 100 | -> | Plus |
arm_3L | 19795998..19796477 | 839..1318 | 100 | | Plus |
BS03879.pep Sequence
Translation from 16 to 1317
> BS03879.pep
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQG*
BS03879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-PE | 646 | CG42584-PE | 214..646 | 1..433 | 2306 | 100 | Plus |
Ir76a-PA | 515 | CG42584-PA | 83..515 | 1..433 | 2306 | 100 | Plus |
Ir76a-PB | 515 | CG8533-PB | 83..515 | 1..433 | 2306 | 100 | Plus |
Ir41a-PC | 648 | CG33492-PC | 202..636 | 2..428 | 936 | 42.3 | Plus |
Ir92a-PC | 678 | CG15685-PC | 237..669 | 3..428 | 402 | 25.6 | Plus |