Clone BS03880 Report

Search the DGRC for BS03880

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptTango2-RA
Protein status:BS03880.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03880.3prime Sequence

883 bp (798 high quality bases) assembled on 2005-12-01

> BS03880.3prime
ATGGTCTAGAAAGCTTTCAAACGCCGTTTTGAAAATCCTTTTCAATGTGG
GTCTTGTTCCATTCGCCGTGCGGATCCAATCCAGTCATTGTCTCCTCAAT
GAAGTGCATCTTATTCTCGCTGTCCACCAGGACAACGGAGTGTGTACGGC
TGCCATAGGCATGCTCTTCGATATGGACGTTTAGGGAACTCAATCCCTCG
CCCCAGTTGGGCGCACGTGTCTTTAGCTCGTCGTCCGGCCAGAATTTGTG
CTTGTTGCGGAGCAACTGCATCAGCTGGGCGGACAGAGTCTCCACGCTGG
CTTCCCCATGAGCCTTAACGATCGCCTCGAACTCCTGTTTGCCATGACGC
ACCTTCTCGAACGGAGAGTGCGGCAGACTGTTGCCAAATCCGTAGCACTC
GCCGTTCTGGAAATCCTCCAGCGTGGGCGGCACATTGCTCAGCAGCTTCA
CGCGAGCGGGCTGGGATGCAGATCCAATTTCGATGGACACAAAGTTGAAG
GCAGAATACTTGGTGCAATCTTTGAGCAGCCTTTCGTTGTAGTTCAGGAT
GCTGTGCTCCTCGTCCGCCCGGGTAACATAGTCCGCCACAATCATGCCGC
GCCCAACTGCATCGCGTGGCTTGGGCTCGCCGGTCAGATTGAGCAGGGCG
CCCACCTTAAAGAAGCCAGCGGAGTGGCCGATCGCCAGCCAGGTGCCGCC
CTCGCGTCCCGGCTCCAGATCGATCCCTCCGTAAACATGATCGGCATTCG
CCCACTTGGCTGCCGATAGGGTGGCGCGGGCAAAGAACTCGTCCCGATTG
GAGGCCAGGATGAGCTTGTAGCCACCCGGTTGCGGATTCGAGTCCGCACA
AAAGAATATCACGCACATGTCGACTGATAACTT

BS03880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11176-PA 852 CG11176-RA 1..852 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1148 868..17 4260 100 Minus
Tango2-RA 1451 CG11176-RA 446..1297 868..17 4260 100 Minus
Tango2-RD 1622 CG11176-RD 881..1468 604..17 2940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619053 474..17 2290 100 Minus
X 23542271 X 13617434..13617576 868..726 715 100 Minus
X 23542271 X 13618272..13618402 604..474 655 100 Minus
X 23542271 X 13617812..13617937 728..603 630 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:36:25 has no hits.

BS03880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:02 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:25 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:39 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1297 17..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:55 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1297 17..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:55 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13617429..13617575 727..872 99 -> Minus
X 13617814..13617936 604..726 100 -> Minus
X 13618273..13618402 474..603 100 -> Minus
X 13618597..13619053 17..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:39 Download gff for BS03880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511462..13511608 727..872 99 -> Minus
arm_X 13511847..13511969 604..726 100 -> Minus
arm_X 13512306..13512435 474..603 100 -> Minus
arm_X 13512630..13513086 17..473 100   Minus

BS03880.5prime Sequence

873 bp (788 high quality bases) assembled on 2005-12-01

> BS03880.5prime
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGAACATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTTTGAAAGC

BS03880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11176-PA 852 CG11176-RA 1..850 17..866 4200 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1146 17..866 4220 99.8 Plus
Tango2-RA 1451 CG11176-RA 446..1295 17..866 4220 99.8 Plus
Tango2-RD 1622 CG11176-RD 881..1466 281..866 2900 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619051 411..866 2250 99.6 Plus
X 23542271 X 13617434..13617576 17..159 715 100 Plus
X 23542271 X 13618272..13618402 281..411 655 100 Plus
X 23542271 X 13617812..13617937 157..282 630 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:43:43 has no hits.

BS03880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:03 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:27 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:14 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1298 13..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:59 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1298 13..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:59 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13617429..13617575 13..158 99 -> Plus
X 13617814..13617936 159..281 100 -> Plus
X 13618273..13618402 282..411 100 -> Plus
X 13618597..13619054 412..873 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:14 Download gff for BS03880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511462..13511608 13..158 99 -> Plus
arm_X 13511847..13511969 159..281 100 -> Plus
arm_X 13512306..13512435 282..411 100 -> Plus
arm_X 13512630..13513087 412..873 98   Plus

BS03880.complete Sequence

884 bp (884 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634810

> BS03880.complete
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTTGAAAGCTTTCTAGACCAT

BS03880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 852 CG11176-PC 1..852 17..868 4260 100 Plus
Tango2-RA 852 CG11176-PA 1..852 17..868 4260 100 Plus
Tango2-RD 1023 CG11176-PD 436..1023 281..868 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1148 17..868 4260 100 Plus
Tango2-RA 1451 CG11176-RA 446..1297 17..868 4260 100 Plus
Tango2-RD 1622 CG11176-RD 881..1468 281..868 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619053 411..868 2290 100 Plus
X 23542271 X 13617434..13617576 17..159 715 100 Plus
X 23542271 X 13618272..13618402 281..411 655 100 Plus
X 23542271 X 13617812..13617937 157..282 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:14:17 has no hits.

BS03880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:10 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:52 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 438..1294 13..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:11:55 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 446..1296 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:10 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 438..1294 13..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:53 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 446..1296 17..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:53 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
X 13617434..13617575 17..158 100 -> Plus
X 13617814..13617936 159..281 100 -> Plus
X 13618273..13618402 282..411 100 -> Plus
X 13618597..13619052 412..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:11:55 Download gff for BS03880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511467..13511608 17..158 100 -> Plus
arm_X 13511847..13511969 159..281 100 -> Plus
arm_X 13512306..13512435 282..411 100 -> Plus
arm_X 13512630..13513085 412..867 100   Plus

BS03880.pep Sequence

Translation from 16 to 867

> BS03880.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTR
ADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLLSNVPPTL
EDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVETLSAQLM
QLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTHSVVLVDS
ENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGV*

BS03880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-PC 283 CG11176-PC 1..283 1..283 1515 100 Plus
Tango2-PA 283 CG11176-PA 1..283 1..283 1515 100 Plus
Tango2-PD 340 CG11176-PD 1..340 1..283 1389 81.2 Plus
Tango2-PB 340 CG11176-PB 1..340 1..283 1389 81.2 Plus