Clone Sequence Records
BS03880.3prime Sequence
883 bp (798 high quality bases) assembled on 2005-12-01
> BS03880.3prime
ATGGTCTAGAAAGCTTTCAAACGCCGTTTTGAAAATCCTTTTCAATGTGG
GTCTTGTTCCATTCGCCGTGCGGATCCAATCCAGTCATTGTCTCCTCAAT
GAAGTGCATCTTATTCTCGCTGTCCACCAGGACAACGGAGTGTGTACGGC
TGCCATAGGCATGCTCTTCGATATGGACGTTTAGGGAACTCAATCCCTCG
CCCCAGTTGGGCGCACGTGTCTTTAGCTCGTCGTCCGGCCAGAATTTGTG
CTTGTTGCGGAGCAACTGCATCAGCTGGGCGGACAGAGTCTCCACGCTGG
CTTCCCCATGAGCCTTAACGATCGCCTCGAACTCCTGTTTGCCATGACGC
ACCTTCTCGAACGGAGAGTGCGGCAGACTGTTGCCAAATCCGTAGCACTC
GCCGTTCTGGAAATCCTCCAGCGTGGGCGGCACATTGCTCAGCAGCTTCA
CGCGAGCGGGCTGGGATGCAGATCCAATTTCGATGGACACAAAGTTGAAG
GCAGAATACTTGGTGCAATCTTTGAGCAGCCTTTCGTTGTAGTTCAGGAT
GCTGTGCTCCTCGTCCGCCCGGGTAACATAGTCCGCCACAATCATGCCGC
GCCCAACTGCATCGCGTGGCTTGGGCTCGCCGGTCAGATTGAGCAGGGCG
CCCACCTTAAAGAAGCCAGCGGAGTGGCCGATCGCCAGCCAGGTGCCGCC
CTCGCGTCCCGGCTCCAGATCGATCCCTCCGTAAACATGATCGGCATTCG
CCCACTTGGCTGCCGATAGGGTGGCGCGGGCAAAGAACTCGTCCCGATTG
GAGGCCAGGATGAGCTTGTAGCCACCCGGTTGCGGATTCGAGTCCGCACA
AAAGAATATCACGCACATGTCGACTGATAACTT
BS03880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11176-PA | 852 | CG11176-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1148 | 868..17 | 4260 | 100 | Minus |
Tango2-RA | 1451 | CG11176-RA | 446..1297 | 868..17 | 4260 | 100 | Minus |
Tango2-RD | 1622 | CG11176-RD | 881..1468 | 604..17 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619053 | 474..17 | 2290 | 100 | Minus |
X | 23542271 | X | 13617434..13617576 | 868..726 | 715 | 100 | Minus |
X | 23542271 | X | 13618272..13618402 | 604..474 | 655 | 100 | Minus |
X | 23542271 | X | 13617812..13617937 | 728..603 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:36:25 has no hits.
BS03880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:02 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:25 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:39 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1297 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:55 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1297 | 17..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:55 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13617429..13617575 | 727..872 | 99 | -> | Minus |
X | 13617814..13617936 | 604..726 | 100 | -> | Minus |
X | 13618273..13618402 | 474..603 | 100 | -> | Minus |
X | 13618597..13619053 | 17..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:39 Download gff for
BS03880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13511462..13511608 | 727..872 | 99 | -> | Minus |
arm_X | 13511847..13511969 | 604..726 | 100 | -> | Minus |
arm_X | 13512306..13512435 | 474..603 | 100 | -> | Minus |
arm_X | 13512630..13513086 | 17..473 | 100 | | Minus |
BS03880.5prime Sequence
873 bp (788 high quality bases) assembled on 2005-12-01
> BS03880.5prime
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGAACATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTTTGAAAGC
BS03880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11176-PA | 852 | CG11176-RA | 1..850 | 17..866 | 4200 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1146 | 17..866 | 4220 | 99.8 | Plus |
Tango2-RA | 1451 | CG11176-RA | 446..1295 | 17..866 | 4220 | 99.8 | Plus |
Tango2-RD | 1622 | CG11176-RD | 881..1466 | 281..866 | 2900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619051 | 411..866 | 2250 | 99.6 | Plus |
X | 23542271 | X | 13617434..13617576 | 17..159 | 715 | 100 | Plus |
X | 23542271 | X | 13618272..13618402 | 281..411 | 655 | 100 | Plus |
X | 23542271 | X | 13617812..13617937 | 157..282 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:43:43 has no hits.
BS03880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:03 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:27 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:14 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1298 | 13..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:59 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1298 | 13..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:59 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13617429..13617575 | 13..158 | 99 | -> | Plus |
X | 13617814..13617936 | 159..281 | 100 | -> | Plus |
X | 13618273..13618402 | 282..411 | 100 | -> | Plus |
X | 13618597..13619054 | 412..873 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:14 Download gff for
BS03880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13511462..13511608 | 13..158 | 99 | -> | Plus |
arm_X | 13511847..13511969 | 159..281 | 100 | -> | Plus |
arm_X | 13512306..13512435 | 282..411 | 100 | -> | Plus |
arm_X | 13512630..13513087 | 412..873 | 98 | | Plus |
BS03880.complete Sequence
884 bp (884 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634810
> BS03880.complete
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTTGAAAGCTTTCTAGACCAT
BS03880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 852 | CG11176-PC | 1..852 | 17..868 | 4260 | 100 | Plus |
Tango2-RA | 852 | CG11176-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Tango2-RD | 1023 | CG11176-PD | 436..1023 | 281..868 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1148 | 17..868 | 4260 | 100 | Plus |
Tango2-RA | 1451 | CG11176-RA | 446..1297 | 17..868 | 4260 | 100 | Plus |
Tango2-RD | 1622 | CG11176-RD | 881..1468 | 281..868 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619053 | 411..868 | 2290 | 100 | Plus |
X | 23542271 | X | 13617434..13617576 | 17..159 | 715 | 100 | Plus |
X | 23542271 | X | 13618272..13618402 | 281..411 | 655 | 100 | Plus |
X | 23542271 | X | 13617812..13617937 | 157..282 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:14:17 has no hits.
BS03880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:10 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:52 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 438..1294 | 13..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:11:55 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 446..1296 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:10 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 438..1294 | 13..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:53 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 446..1296 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:53 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13617434..13617575 | 17..158 | 100 | -> | Plus |
X | 13617814..13617936 | 159..281 | 100 | -> | Plus |
X | 13618273..13618402 | 282..411 | 100 | -> | Plus |
X | 13618597..13619052 | 412..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:11:55 Download gff for
BS03880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13511467..13511608 | 17..158 | 100 | -> | Plus |
arm_X | 13511847..13511969 | 159..281 | 100 | -> | Plus |
arm_X | 13512306..13512435 | 282..411 | 100 | -> | Plus |
arm_X | 13512630..13513085 | 412..867 | 100 | | Plus |
BS03880.pep Sequence
Translation from 16 to 867
> BS03880.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTR
ADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLLSNVPPTL
EDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVETLSAQLM
QLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTHSVVLVDS
ENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGV*
BS03880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-PC | 283 | CG11176-PC | 1..283 | 1..283 | 1515 | 100 | Plus |
Tango2-PA | 283 | CG11176-PA | 1..283 | 1..283 | 1515 | 100 | Plus |
Tango2-PD | 340 | CG11176-PD | 1..340 | 1..283 | 1389 | 81.2 | Plus |
Tango2-PB | 340 | CG11176-PB | 1..340 | 1..283 | 1389 | 81.2 | Plus |