Clone BS03882 Report

Search the DGRC for BS03882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRanBP3-RA
Protein status:BS03882.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03882.3prime Sequence

860 bp (821 high quality bases) assembled on 2005-12-01

> BS03882.3prime
ATGGTCTAGAAAGCTTTTAATTCTGATCGGTTGACTCCTTGGCCTCGGCC
TCAGCATCCTCGTCGCCCTCCTCAACGGGCGGCACAGGGACATCGGCGCT
GCTATCGGGCTGGACGATCACCTTCTTGGGACTCGGGCCGTAGCTGTCTG
CCTCTGCTGAAATGGCACCAGACGGTCCGGGAGCAGCATCCTCATCCTCG
TCGTCGTGAGTCGTCGACTCCGGTTGCAAGCTAGCCGCTGCCTCAGAGGC
GACGCCGTTTTTCGCTTCCTCTACGGAACACTCCTCGGGATGTGAGACCT
TGCGCTTGGCAATCCGTTCGCTGAGCGCCTTGTGTAGCTGGGCAATGTCC
GCCGGTCGGCCCATGGCCAGGAAGATCTTGACAACGCCAGAGTTGTCGAT
GGCCGTTAGTCGTAGGGACTTTTGGCTGGCTCGCTCCGCCACCATGGCGG
CCCAGACTTTGGTGTTGAGAAGCAGGCGCAGATTGCCAGAAGTGCGGAAC
ACCACGCGCGAGTCGCCCCTTAAGTCCTTGGCGTCGTTTAAGCGCAGACT
GCCGCGACCACGCTCCTCCCAGTTGCTGTTAAGAAAGGCGAATAGCTTGC
AGCTCACGTCGATAATGTTGATCTCGTCCTCCTCGCCGGTGAAGGTCTCG
ACCTCCTCGTATTTGCGTTTCTGAGCGCGGCTCTCCTCATACTCCCGGGC
CACATCCGTCAGGCTCTTGGCCTCGGCGGACTCCTTGTTGTTGCTGCTGC
TGCTGCAAATGGATGAGGAGGCAGCGGCCTCGCTGGTCTCTGTGGTCTGG
GCAGCGTTCTGAATGACGCTTGAGAAGAGCAATGGCGCCGAGGACGACGT
AGCAGCGGTG

BS03882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10225-PA 1350 CG10225-RA 507..1350 860..17 4220 100 Minus
CG33106-PA 12006 mask-RA 3551..3578 763..736 140 100 Minus
CG33106-PB 12006 mask-RB 3551..3578 763..736 140 100 Minus
CG14039-PG 1608 qtc-RG 51..77 755..729 135 100 Minus
CG14039-PC 1701 qtc-RC 51..77 755..729 135 100 Minus
CG14039-PB 1701 qtc-RB 51..77 755..729 135 100 Minus
CG14039-PD 1797 qtc-RD 147..173 755..729 135 100 Minus
CG14039-PE 2073 qtc-RE 516..542 755..729 135 100 Minus
CG14039-PA 2166 qtc-RA 516..542 755..729 135 100 Minus
CG14039-PF 2166 qtc-RF 516..542 755..729 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-RB 1767 CG10225-RB 619..1462 860..17 4220 100 Minus
RanBP3-RA 1770 CG10225-RA 622..1465 860..17 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23751242..23752085 17..860 4220 100 Plus
Blast to na_te.dros performed 2015-02-02 19:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1132..1172 756..717 112 78 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3215..3311 828..735 108 59.8 Minus

BS03882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:04 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10225-PA 507..1350 17..860 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:29 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10225-PA 507..1350 17..860 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:02 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 622..1469 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:42 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 622..1469 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:42 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23751238..23752085 13..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:02 Download gff for BS03882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19576960..19577807 13..860 99   Plus

BS03882.5prime Sequence

880 bp (725 high quality bases) assembled on 2005-12-01

> BS03882.5prime
GAAGTTATCAGTCGACATGTCTGAAAATAATGAAGCGTCAGTCGAAACTA
ACTGTTTCCGAGGTGGCTTCACCTTGAAGGCTTCTCGCCTGGGCGGTGCT
GTCCTGCGCCCAGCAGTCTTGGCAAACAGCAGCGGCTCCAACAATAGTTC
CACATCCCCAAGTGCAGGTGAAGACAGCGCCCTGCTGAATAATCCGTTTC
TGCGCGAGTCCAAGGACGACGACGATGACGAGGAGGTGGTGGCCACCGGA
TCTGCGGCAGCCGAGTCCACTGGCGACAAGGAGGACGACGATGTCGACGA
GCGGCCGGATCCGCTGACCAAGCTGCGTAGCAATGGCATTGAGCGCTCCA
GCATGTTTGCAGCAGCCAAGAACAACATGCCAAATGTTCAGTCCAGCGGG
TTCGTCTTCGGCCAGAATGTGCATGAACGTGTGGTGGCCCCCAATGCTGA
ACAGGTCACCGCTGAGCCGGATGCAGATACGGCAGCCAGCTCGGTATCAG
CCCAGGAGGCTGCCTCCTCCTCCACCGCTGCTACGTCGTCCTCGGCGCCA
TTGCTCTTCTCAAGCGTCATTCAGAACGCTGCCCAGACCACAGAGACCAG
CGAGGCCGCTGCCTCCTCATCCATTTGCAGCAGCAGCAGCAACAACAAGG
AGTCCGCCGAGGCCAAGAGCCTGACGGATGTGGCCCGGGAGTATGAGGAG
AGCCGCGCTCAGAAACGCAAATACGAGGAGGTCGAGACCTTCACCGGCGA
GGAGGACGAGATCAACATTATCGACGTGAGCTGCAAGCTATTCGCCTTTC
TTAACAGCAACTGGGAGGAGCGTGGTCGCGGCAGTCTGCGCTTAAACGAC
GCCAAGGACTTAAGGGGCGACTCGCGCGTG

BS03882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10225-PA 1350 CG10225-RA 1..864 17..880 4320 100 Plus
CG33106-PA 12006 mask-RA 3551..3578 620..647 140 100 Plus
CG33106-PB 12006 mask-RB 3551..3578 620..647 140 100 Plus
CG14039-PG 1608 qtc-RG 51..77 628..654 135 100 Plus
CG14039-PC 1701 qtc-RC 51..77 628..654 135 100 Plus
CG14039-PB 1701 qtc-RB 51..77 628..654 135 100 Plus
CG14039-PD 1797 qtc-RD 147..173 628..654 135 100 Plus
CG14039-PE 2073 qtc-RE 516..542 628..654 135 100 Plus
CG14039-PA 2166 qtc-RA 516..542 628..654 135 100 Plus
CG14039-PF 2166 qtc-RF 516..542 628..654 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-RA 1770 CG10225-RA 116..979 17..880 4320 100 Plus
RanBP3-RB 1767 CG10225-RB 116..976 17..880 4265 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23751728..23752576 880..32 4245 100 Minus
Blast to na_te.dros performed 2015-02-13 02:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1132..1172 627..666 112 78 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3215..3311 555..648 108 59.8 Plus

BS03882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:06 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10225-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:30 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10225-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:44:26 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 116..979 17..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:58 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 116..979 17..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:58 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23751728..23752575 33..880 100 <- Minus
3R 23752704..23752719 17..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:44:26 Download gff for BS03882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19577450..19578297 33..880 100 <- Minus
arm_3R 19578426..19578441 17..32 100   Minus

BS03882.complete Sequence

1382 bp (1382 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634811

> BS03882.complete
GAAGTTATCAGTCGACATGTCTGAAAATAATGAAGCGTCAGTCGAAACTA
ACTGTTTCCGAGGTGGCTTCACCTTGAAGGCTTCTCGCCTGGGCGGTGCT
GTCCTGCGCCCAGCAGTCTTGGCAAACAGCAGCGGCTCCAACAATAGTTC
CACATCCCCAAGTGCAGGTGAAGACAGCGCCCTGCTGAATAATCCGTTTC
TGCGCGAGTCCAAGGACGACGACGATGACGAGGAGGTGGTGGCCACCGGA
TCTGCGGCAGCCGAGTCCACTGGCGACAAGGAGGACGACGATGTCGACGA
GCGGCCGGATCCGCTGACCAAGCTGCGTAGCAATGGCATTGAGCGCTCCA
GCATGTTTGCAGCAGCCAAGAACAACATGCCAAATGTTCAGTCCAGCGGG
TTCGTCTTCGGCCAGAATGTGCATGAACGTGTGGTGGCCCCCAATGCTGA
ACAGGTCACCGCTGAGCCGGATGCAGATACGGCAGCCAGCTCGGTATCAG
CCCAGGAGGCTGCCTCCTCCTCCACCGCTGCTACGTCGTCCTCGGCGCCA
TTGCTCTTCTCAAGCGTCATTCAGAACGCTGCCCAGACCACAGAGACCAG
CGAGGCCGCTGCCTCCTCATCCATTTGCAGCAGCAGCAGCAACAACAAGG
AGTCCGCCGAGGCCAAGAGCCTGACGGATGTGGCCCGGGAGTATGAGGAG
AGCCGCGCTCAGAAACGCAAATACGAGGAGGTCGAGACCTTCACCGGCGA
GGAGGACGAGATCAACATTATCGACGTGAGCTGCAAGCTATTCGCCTTTC
TTAACAGCAACTGGGAGGAGCGTGGTCGCGGCAGTCTGCGCTTAAACGAC
GCCAAGGACTTAAGGGGCGACTCGCGCGTGGTGTTCCGCACTTCTGGCAA
TCTGCGCCTGCTTCTCAACACCAAAGTCTGGGCCGCCATGGTGGCGGAGC
GAGCCAGCCAAAAGTCCCTACGACTAACGGCCATCGACAACTCTGGCGTT
GTCAAGATCTTCCTGGCCATGGGCCGACCGGCGGACATTGCCCAGCTACA
CAAGGCGCTCAGCGAACGGATTGCCAAGCGCAAGGTCTCACATCCCGAGG
AGTGTTCCGTAGAGGAAGCGAAAAACGGCGTCGCCTCTGAGGCAGCGGCT
AGCTTGCAACCGGAGTCGACGACTCACGACGACGAGGATGAGGATGCTGC
TCCCGGACCGTCTGGTGCCATTTCAGCAGAGGCAGACAGCTACGGCCCGA
GTCCCAAGAAGGTGATCGTCCAGCCCGATAGCAGCGCCGATGTCCCTGTG
CCGCCCGTTGAGGAGGGCGACGAGGATGCTGAGGCCGAGGCCAAGGAGTC
AACCGATCAGAATTAAAAGCTTTCTAGACCAT

BS03882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-RA 1350 CG10225-PA 1..1350 17..1366 6750 100 Plus
RanBP3-RB 1347 CG10225-PB 1..1347 17..1366 6670 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-RA 1770 CG10225-RA 116..1465 17..1366 6750 100 Plus
RanBP3-RB 1767 CG10225-RB 116..1462 17..1366 6670 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23751242..23752576 1366..32 6675 100 Minus
Blast to na_te.dros performed 2014-11-26 21:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1132..1172 627..666 112 78 Plus

BS03882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:12 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 1..1350 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:53 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 112..1465 17..1370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:14 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 116..1463 17..1364 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:12 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 112..1465 17..1370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:23 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 116..1463 17..1364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:23 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23751244..23752575 33..1364 100 <- Minus
3R 23752704..23752719 17..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:14 Download gff for BS03882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19576966..19578297 33..1364 100 <- Minus
arm_3R 19578426..19578441 17..32 100   Minus

BS03882.pep Sequence

Translation from 16 to 1365

> BS03882.pep
MSENNEASVETNCFRGGFTLKASRLGGAVLRPAVLANSSGSNNSSTSPSA
GEDSALLNNPFLRESKDDDDDEEVVATGSAAAESTGDKEDDDVDERPDPL
TKLRSNGIERSSMFAAAKNNMPNVQSSGFVFGQNVHERVVAPNAEQVTAE
PDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAAS
SSICSSSSNNKESAEAKSLTDVAREYEESRAQKRKYEEVETFTGEEDEIN
IIDVSCKLFAFLNSNWEERGRGSLRLNDAKDLRGDSRVVFRTSGNLRLLL
NTKVWAAMVAERASQKSLRLTAIDNSGVVKIFLAMGRPADIAQLHKALSE
RIAKRKVSHPEECSVEEAKNGVASEAAASLQPESTTHDDEDEDAAPGPSG
AISAEADSYGPSPKKVIVQPDSSADVPVPPVEEGDEDAEAEAKESTDQN*

BS03882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-PA 449 CG10225-PA 1..449 1..449 2231 100 Plus
RanBP3-PB 448 CG10225-PB 1..448 1..449 2214 99.8 Plus