Clone Sequence Records
BS03882.3prime Sequence
860 bp (821 high quality bases) assembled on 2005-12-01
> BS03882.3prime
ATGGTCTAGAAAGCTTTTAATTCTGATCGGTTGACTCCTTGGCCTCGGCC
TCAGCATCCTCGTCGCCCTCCTCAACGGGCGGCACAGGGACATCGGCGCT
GCTATCGGGCTGGACGATCACCTTCTTGGGACTCGGGCCGTAGCTGTCTG
CCTCTGCTGAAATGGCACCAGACGGTCCGGGAGCAGCATCCTCATCCTCG
TCGTCGTGAGTCGTCGACTCCGGTTGCAAGCTAGCCGCTGCCTCAGAGGC
GACGCCGTTTTTCGCTTCCTCTACGGAACACTCCTCGGGATGTGAGACCT
TGCGCTTGGCAATCCGTTCGCTGAGCGCCTTGTGTAGCTGGGCAATGTCC
GCCGGTCGGCCCATGGCCAGGAAGATCTTGACAACGCCAGAGTTGTCGAT
GGCCGTTAGTCGTAGGGACTTTTGGCTGGCTCGCTCCGCCACCATGGCGG
CCCAGACTTTGGTGTTGAGAAGCAGGCGCAGATTGCCAGAAGTGCGGAAC
ACCACGCGCGAGTCGCCCCTTAAGTCCTTGGCGTCGTTTAAGCGCAGACT
GCCGCGACCACGCTCCTCCCAGTTGCTGTTAAGAAAGGCGAATAGCTTGC
AGCTCACGTCGATAATGTTGATCTCGTCCTCCTCGCCGGTGAAGGTCTCG
ACCTCCTCGTATTTGCGTTTCTGAGCGCGGCTCTCCTCATACTCCCGGGC
CACATCCGTCAGGCTCTTGGCCTCGGCGGACTCCTTGTTGTTGCTGCTGC
TGCTGCAAATGGATGAGGAGGCAGCGGCCTCGCTGGTCTCTGTGGTCTGG
GCAGCGTTCTGAATGACGCTTGAGAAGAGCAATGGCGCCGAGGACGACGT
AGCAGCGGTG
BS03882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10225-PA | 1350 | CG10225-RA | 507..1350 | 860..17 | 4220 | 100 | Minus |
CG33106-PA | 12006 | mask-RA | 3551..3578 | 763..736 | 140 | 100 | Minus |
CG33106-PB | 12006 | mask-RB | 3551..3578 | 763..736 | 140 | 100 | Minus |
CG14039-PG | 1608 | qtc-RG | 51..77 | 755..729 | 135 | 100 | Minus |
CG14039-PC | 1701 | qtc-RC | 51..77 | 755..729 | 135 | 100 | Minus |
CG14039-PB | 1701 | qtc-RB | 51..77 | 755..729 | 135 | 100 | Minus |
CG14039-PD | 1797 | qtc-RD | 147..173 | 755..729 | 135 | 100 | Minus |
CG14039-PE | 2073 | qtc-RE | 516..542 | 755..729 | 135 | 100 | Minus |
CG14039-PA | 2166 | qtc-RA | 516..542 | 755..729 | 135 | 100 | Minus |
CG14039-PF | 2166 | qtc-RF | 516..542 | 755..729 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RanBP3-RB | 1767 | CG10225-RB | 619..1462 | 860..17 | 4220 | 100 | Minus |
RanBP3-RA | 1770 | CG10225-RA | 622..1465 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23751242..23752085 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 19:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1132..1172 | 756..717 | 112 | 78 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3215..3311 | 828..735 | 108 | 59.8 | Minus |
BS03882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:04 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-PA | 507..1350 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:29 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-PA | 507..1350 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:02 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 622..1469 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:42 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 622..1469 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:42 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23751238..23752085 | 13..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:02 Download gff for
BS03882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19576960..19577807 | 13..860 | 99 | | Plus |
BS03882.5prime Sequence
880 bp (725 high quality bases) assembled on 2005-12-01
> BS03882.5prime
GAAGTTATCAGTCGACATGTCTGAAAATAATGAAGCGTCAGTCGAAACTA
ACTGTTTCCGAGGTGGCTTCACCTTGAAGGCTTCTCGCCTGGGCGGTGCT
GTCCTGCGCCCAGCAGTCTTGGCAAACAGCAGCGGCTCCAACAATAGTTC
CACATCCCCAAGTGCAGGTGAAGACAGCGCCCTGCTGAATAATCCGTTTC
TGCGCGAGTCCAAGGACGACGACGATGACGAGGAGGTGGTGGCCACCGGA
TCTGCGGCAGCCGAGTCCACTGGCGACAAGGAGGACGACGATGTCGACGA
GCGGCCGGATCCGCTGACCAAGCTGCGTAGCAATGGCATTGAGCGCTCCA
GCATGTTTGCAGCAGCCAAGAACAACATGCCAAATGTTCAGTCCAGCGGG
TTCGTCTTCGGCCAGAATGTGCATGAACGTGTGGTGGCCCCCAATGCTGA
ACAGGTCACCGCTGAGCCGGATGCAGATACGGCAGCCAGCTCGGTATCAG
CCCAGGAGGCTGCCTCCTCCTCCACCGCTGCTACGTCGTCCTCGGCGCCA
TTGCTCTTCTCAAGCGTCATTCAGAACGCTGCCCAGACCACAGAGACCAG
CGAGGCCGCTGCCTCCTCATCCATTTGCAGCAGCAGCAGCAACAACAAGG
AGTCCGCCGAGGCCAAGAGCCTGACGGATGTGGCCCGGGAGTATGAGGAG
AGCCGCGCTCAGAAACGCAAATACGAGGAGGTCGAGACCTTCACCGGCGA
GGAGGACGAGATCAACATTATCGACGTGAGCTGCAAGCTATTCGCCTTTC
TTAACAGCAACTGGGAGGAGCGTGGTCGCGGCAGTCTGCGCTTAAACGAC
GCCAAGGACTTAAGGGGCGACTCGCGCGTG
BS03882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10225-PA | 1350 | CG10225-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
CG33106-PA | 12006 | mask-RA | 3551..3578 | 620..647 | 140 | 100 | Plus |
CG33106-PB | 12006 | mask-RB | 3551..3578 | 620..647 | 140 | 100 | Plus |
CG14039-PG | 1608 | qtc-RG | 51..77 | 628..654 | 135 | 100 | Plus |
CG14039-PC | 1701 | qtc-RC | 51..77 | 628..654 | 135 | 100 | Plus |
CG14039-PB | 1701 | qtc-RB | 51..77 | 628..654 | 135 | 100 | Plus |
CG14039-PD | 1797 | qtc-RD | 147..173 | 628..654 | 135 | 100 | Plus |
CG14039-PE | 2073 | qtc-RE | 516..542 | 628..654 | 135 | 100 | Plus |
CG14039-PA | 2166 | qtc-RA | 516..542 | 628..654 | 135 | 100 | Plus |
CG14039-PF | 2166 | qtc-RF | 516..542 | 628..654 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RanBP3-RA | 1770 | CG10225-RA | 116..979 | 17..880 | 4320 | 100 | Plus |
RanBP3-RB | 1767 | CG10225-RB | 116..976 | 17..880 | 4265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23751728..23752576 | 880..32 | 4245 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1132..1172 | 627..666 | 112 | 78 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3215..3311 | 555..648 | 108 | 59.8 | Plus |
BS03882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:06 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:30 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:44:26 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 116..979 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:58 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 116..979 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:58 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23751728..23752575 | 33..880 | 100 | <- | Minus |
3R | 23752704..23752719 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:44:26 Download gff for
BS03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19577450..19578297 | 33..880 | 100 | <- | Minus |
arm_3R | 19578426..19578441 | 17..32 | 100 | | Minus |
BS03882.complete Sequence
1382 bp (1382 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634811
> BS03882.complete
GAAGTTATCAGTCGACATGTCTGAAAATAATGAAGCGTCAGTCGAAACTA
ACTGTTTCCGAGGTGGCTTCACCTTGAAGGCTTCTCGCCTGGGCGGTGCT
GTCCTGCGCCCAGCAGTCTTGGCAAACAGCAGCGGCTCCAACAATAGTTC
CACATCCCCAAGTGCAGGTGAAGACAGCGCCCTGCTGAATAATCCGTTTC
TGCGCGAGTCCAAGGACGACGACGATGACGAGGAGGTGGTGGCCACCGGA
TCTGCGGCAGCCGAGTCCACTGGCGACAAGGAGGACGACGATGTCGACGA
GCGGCCGGATCCGCTGACCAAGCTGCGTAGCAATGGCATTGAGCGCTCCA
GCATGTTTGCAGCAGCCAAGAACAACATGCCAAATGTTCAGTCCAGCGGG
TTCGTCTTCGGCCAGAATGTGCATGAACGTGTGGTGGCCCCCAATGCTGA
ACAGGTCACCGCTGAGCCGGATGCAGATACGGCAGCCAGCTCGGTATCAG
CCCAGGAGGCTGCCTCCTCCTCCACCGCTGCTACGTCGTCCTCGGCGCCA
TTGCTCTTCTCAAGCGTCATTCAGAACGCTGCCCAGACCACAGAGACCAG
CGAGGCCGCTGCCTCCTCATCCATTTGCAGCAGCAGCAGCAACAACAAGG
AGTCCGCCGAGGCCAAGAGCCTGACGGATGTGGCCCGGGAGTATGAGGAG
AGCCGCGCTCAGAAACGCAAATACGAGGAGGTCGAGACCTTCACCGGCGA
GGAGGACGAGATCAACATTATCGACGTGAGCTGCAAGCTATTCGCCTTTC
TTAACAGCAACTGGGAGGAGCGTGGTCGCGGCAGTCTGCGCTTAAACGAC
GCCAAGGACTTAAGGGGCGACTCGCGCGTGGTGTTCCGCACTTCTGGCAA
TCTGCGCCTGCTTCTCAACACCAAAGTCTGGGCCGCCATGGTGGCGGAGC
GAGCCAGCCAAAAGTCCCTACGACTAACGGCCATCGACAACTCTGGCGTT
GTCAAGATCTTCCTGGCCATGGGCCGACCGGCGGACATTGCCCAGCTACA
CAAGGCGCTCAGCGAACGGATTGCCAAGCGCAAGGTCTCACATCCCGAGG
AGTGTTCCGTAGAGGAAGCGAAAAACGGCGTCGCCTCTGAGGCAGCGGCT
AGCTTGCAACCGGAGTCGACGACTCACGACGACGAGGATGAGGATGCTGC
TCCCGGACCGTCTGGTGCCATTTCAGCAGAGGCAGACAGCTACGGCCCGA
GTCCCAAGAAGGTGATCGTCCAGCCCGATAGCAGCGCCGATGTCCCTGTG
CCGCCCGTTGAGGAGGGCGACGAGGATGCTGAGGCCGAGGCCAAGGAGTC
AACCGATCAGAATTAAAAGCTTTCTAGACCAT
BS03882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RanBP3-RA | 1350 | CG10225-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
RanBP3-RB | 1347 | CG10225-PB | 1..1347 | 17..1366 | 6670 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RanBP3-RA | 1770 | CG10225-RA | 116..1465 | 17..1366 | 6750 | 100 | Plus |
RanBP3-RB | 1767 | CG10225-RB | 116..1462 | 17..1366 | 6670 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23751242..23752576 | 1366..32 | 6675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1132..1172 | 627..666 | 112 | 78 | Plus |
BS03882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:12 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:53 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-RA | 112..1465 | 17..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:14 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 116..1463 | 17..1364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:12 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10225-RA | 112..1465 | 17..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:23 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RanBP3-RA | 116..1463 | 17..1364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:23 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23751244..23752575 | 33..1364 | 100 | <- | Minus |
3R | 23752704..23752719 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:14 Download gff for
BS03882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19576966..19578297 | 33..1364 | 100 | <- | Minus |
arm_3R | 19578426..19578441 | 17..32 | 100 | | Minus |
BS03882.pep Sequence
Translation from 16 to 1365
> BS03882.pep
MSENNEASVETNCFRGGFTLKASRLGGAVLRPAVLANSSGSNNSSTSPSA
GEDSALLNNPFLRESKDDDDDEEVVATGSAAAESTGDKEDDDVDERPDPL
TKLRSNGIERSSMFAAAKNNMPNVQSSGFVFGQNVHERVVAPNAEQVTAE
PDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAAS
SSICSSSSNNKESAEAKSLTDVAREYEESRAQKRKYEEVETFTGEEDEIN
IIDVSCKLFAFLNSNWEERGRGSLRLNDAKDLRGDSRVVFRTSGNLRLLL
NTKVWAAMVAERASQKSLRLTAIDNSGVVKIFLAMGRPADIAQLHKALSE
RIAKRKVSHPEECSVEEAKNGVASEAAASLQPESTTHDDEDEDAAPGPSG
AISAEADSYGPSPKKVIVQPDSSADVPVPPVEEGDEDAEAEAKESTDQN*
BS03882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RanBP3-PA | 449 | CG10225-PA | 1..449 | 1..449 | 2231 | 100 | Plus |
RanBP3-PB | 448 | CG10225-PB | 1..448 | 1..449 | 2214 | 99.8 | Plus |