Clone BS03883 Report

Search the DGRC for BS03883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG5445-RA
Protein status:BS03883.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03883.3prime Sequence

791 bp (755 high quality bases) assembled on 2005-12-01

> BS03883.3prime
ATGGTCTAGAAAGCTTTCATTGGGTGTGCGCGGTTATCACGATGTTGATT
TGCGGATAGATATCCGGCTTCACCTCCGACGTAATCAGCTGCACCATCCG
CTGCTGCAGTTCGTCCTGGCTGGCCTGCGTACCGGGCGGTATCATCCAAA
TGGCATCGCCAAAGTACCAGCCATTTGAAGTGCACAGCCGCCACATTGTC
GGCGGCTGCGTGGGCATCATATCGGCCAGGATATCACAAGTTTCGCCCGG
ACGTAGGGCGGGCACATTGATGCGCTGCGTCTGGATGGGCGAGGTCAGAT
AGCAGTTGTTCGGCCAGCGCTCGGTGCCATCGTTCTGCAGCTGAAACGCT
TGCTGCTGAGCATTCACTTGCTTCTCCTGGACGATCTTCATCGAAGGCAG
CGACTGTAAGCTGCAGAAGTCCAGATAGCAGCCCACCGCCGTCTGCAGGC
TCCAGTTACTCATCTCTAGGTAAAACCTGGCCGATTCCCGGTTCATCTGG
TTGTTCATTAGGCTCTGAAACTGGCTGATGAGGTCTTCGTGGTCCGTGGT
GCCCATACAGCTGAACTGTTGCAGCAACAGGGAGTCGATATCGAAGTCGT
TCGTCGGTAGACACTTGATCGTGGATGCGGATGCGTTAGCGGTTGTTGCG
GATGGACTGGGACTCAGATTTGAGTTGGGATTCGCATTCGAATTTGGACT
GTTGTTCGGAGCGGAGTGCGGCCCTGGGGGCGCGGGCAGGGGAATGGCCA
TCATGGGATTTGTGGTTGTTGTTGTATTTGGTTGTGAGCCC

BS03883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PB 912 CG5445-RB 151..912 778..17 3810 100 Minus
CG5445-PC 912 CG5445-RC 151..912 778..17 3810 100 Minus
CG5445-PA 912 CG5445-RA 151..912 778..17 3810 100 Minus
CG5445-PD 912 CG5445-RD 151..912 778..17 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 636..1409 791..17 3850 99.9 Minus
CG5445-RF 1740 CG5445-RF 329..1102 791..17 3850 99.9 Minus
CG5445-RD 1995 CG5445-RD 584..1357 791..17 3850 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17303053..17303391 791..452 1650 99.7 Minus
X 23542271 X 17304074..17304370 453..157 1485 100 Minus
X 23542271 X 17304697..17304837 157..17 705 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:19:47 has no hits.

BS03883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:07 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PC 139..912 17..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:31 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PD 139..912 17..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:59 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 584..1359 13..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:39 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 584..1359 13..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:39 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17303053..17303390 453..791 99 -> Minus
X 17304075..17304370 157..452 100 -> Minus
X 17304698..17304839 13..156 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:59 Download gff for BS03883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17197086..17197423 453..791 99 -> Minus
arm_X 17198108..17198403 157..452 100 -> Minus
arm_X 17198731..17198872 13..156 98   Minus

BS03883.5prime Sequence

907 bp (816 high quality bases) assembled on 2005-11-29

> BS03883.5prime
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTG

BS03883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PB 912 CG5445-RB 1..891 17..907 4455 100 Plus
CG5445-PC 912 CG5445-RC 1..891 17..907 4455 100 Plus
CG5445-PA 912 CG5445-RA 1..891 17..907 4455 100 Plus
CG5445-PD 912 CG5445-RD 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1388 13..907 4460 99.9 Plus
CG5445-RF 1740 CG5445-RF 187..1081 13..907 4460 99.9 Plus
CG5445-RD 1995 CG5445-RD 442..1336 13..907 4460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 13..493 2390 99.8 Plus
X 23542271 X 17304074..17304370 492..788 1485 100 Plus
X 23542271 X 17304697..17304816 788..907 600 100 Plus
Blast to na_te.dros performed 2015-02-02 12:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 114..150 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 108..185 114 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 108..139 111 85.3 Plus
TART-A 13424 TART-A 13424bp 8635..8667 108..140 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1064..1135 113..185 110 63 Plus

BS03883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:08 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PC 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:32 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PD 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:37 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 440..1336 10..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:04 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 440..1336 10..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:04 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17302909..17303390 10..492 99 -> Plus
X 17304075..17304370 493..788 100 -> Plus
X 17304698..17304816 789..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:37 Download gff for BS03883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196942..17197423 10..492 99 -> Plus
arm_X 17198108..17198403 493..788 100 -> Plus
arm_X 17198731..17198849 789..907 100   Plus

BS03883.complete Sequence

944 bp (944 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634812

> BS03883.complete
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTGATAACCGCGCACACCCAATGAAAGCTTTCTAGACCAT

BS03883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 912 CG5445-PG 1..912 17..928 4560 100 Plus
CG5445-RF 912 CG5445-PF 1..912 17..928 4560 100 Plus
CG5445-RD 912 CG5445-PD 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1409 13..928 4565 99.9 Plus
CG5445-RF 1740 CG5445-RF 187..1102 13..928 4565 99.9 Plus
CG5445-RD 1995 CG5445-RD 442..1357 13..928 4565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 13..493 2390 99.8 Plus
X 23542271 X 17304074..17304370 492..788 1485 100 Plus
X 23542271 X 17304697..17304837 788..928 705 100 Plus
Blast to na_te.dros performed 2014-11-28 00:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 114..150 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 108..185 114 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 108..139 111 85.3 Plus
TART-A 13424 TART-A 13424bp 8635..8667 108..140 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1064..1135 113..185 110 63 Plus

BS03883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:13 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:55 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 382..1301 10..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:16 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 446..1356 17..927 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:14 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 382..1301 10..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:08 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 446..1356 17..927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:08 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
X 17302915..17303390 17..492 100 -> Plus
X 17304075..17304370 493..788 100 -> Plus
X 17304698..17304836 789..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:16 Download gff for BS03883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17198731..17198869 789..927 100   Plus
arm_X 17196948..17197423 17..492 100 -> Plus
arm_X 17198108..17198403 493..788 100 -> Plus

BS03883.pep Sequence

Translation from 16 to 927

> BS03883.pep
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQ*

BS03883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PG 303 CG5445-PG 1..303 1..303 1626 100 Plus
CG5445-PF 303 CG5445-PF 1..303 1..303 1626 100 Plus
CG5445-PD 303 CG5445-PD 1..303 1..303 1626 100 Plus
CG5445-PA 303 CG5445-PA 1..303 1..303 1626 100 Plus
CG5445-PB 303 CG5445-PB 1..303 1..303 1626 100 Plus