Clone Sequence Records
BS03883.3prime Sequence
791 bp (755 high quality bases) assembled on 2005-12-01
> BS03883.3prime
ATGGTCTAGAAAGCTTTCATTGGGTGTGCGCGGTTATCACGATGTTGATT
TGCGGATAGATATCCGGCTTCACCTCCGACGTAATCAGCTGCACCATCCG
CTGCTGCAGTTCGTCCTGGCTGGCCTGCGTACCGGGCGGTATCATCCAAA
TGGCATCGCCAAAGTACCAGCCATTTGAAGTGCACAGCCGCCACATTGTC
GGCGGCTGCGTGGGCATCATATCGGCCAGGATATCACAAGTTTCGCCCGG
ACGTAGGGCGGGCACATTGATGCGCTGCGTCTGGATGGGCGAGGTCAGAT
AGCAGTTGTTCGGCCAGCGCTCGGTGCCATCGTTCTGCAGCTGAAACGCT
TGCTGCTGAGCATTCACTTGCTTCTCCTGGACGATCTTCATCGAAGGCAG
CGACTGTAAGCTGCAGAAGTCCAGATAGCAGCCCACCGCCGTCTGCAGGC
TCCAGTTACTCATCTCTAGGTAAAACCTGGCCGATTCCCGGTTCATCTGG
TTGTTCATTAGGCTCTGAAACTGGCTGATGAGGTCTTCGTGGTCCGTGGT
GCCCATACAGCTGAACTGTTGCAGCAACAGGGAGTCGATATCGAAGTCGT
TCGTCGGTAGACACTTGATCGTGGATGCGGATGCGTTAGCGGTTGTTGCG
GATGGACTGGGACTCAGATTTGAGTTGGGATTCGCATTCGAATTTGGACT
GTTGTTCGGAGCGGAGTGCGGCCCTGGGGGCGCGGGCAGGGGAATGGCCA
TCATGGGATTTGTGGTTGTTGTTGTATTTGGTTGTGAGCCC
BS03883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PB | 912 | CG5445-RB | 151..912 | 778..17 | 3810 | 100 | Minus |
CG5445-PC | 912 | CG5445-RC | 151..912 | 778..17 | 3810 | 100 | Minus |
CG5445-PA | 912 | CG5445-RA | 151..912 | 778..17 | 3810 | 100 | Minus |
CG5445-PD | 912 | CG5445-RD | 151..912 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 636..1409 | 791..17 | 3850 | 99.9 | Minus |
CG5445-RF | 1740 | CG5445-RF | 329..1102 | 791..17 | 3850 | 99.9 | Minus |
CG5445-RD | 1995 | CG5445-RD | 584..1357 | 791..17 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17303053..17303391 | 791..452 | 1650 | 99.7 | Minus |
X | 23542271 | X | 17304074..17304370 | 453..157 | 1485 | 100 | Minus |
X | 23542271 | X | 17304697..17304837 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:19:47 has no hits.
BS03883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:07 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PC | 139..912 | 17..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:31 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PD | 139..912 | 17..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:59 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 584..1359 | 13..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:39 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 584..1359 | 13..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:39 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17303053..17303390 | 453..791 | 99 | -> | Minus |
X | 17304075..17304370 | 157..452 | 100 | -> | Minus |
X | 17304698..17304839 | 13..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:59 Download gff for
BS03883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17197086..17197423 | 453..791 | 99 | -> | Minus |
arm_X | 17198108..17198403 | 157..452 | 100 | -> | Minus |
arm_X | 17198731..17198872 | 13..156 | 98 | | Minus |
BS03883.5prime Sequence
907 bp (816 high quality bases) assembled on 2005-11-29
> BS03883.5prime
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTG
BS03883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PB | 912 | CG5445-RB | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5445-PC | 912 | CG5445-RC | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5445-PA | 912 | CG5445-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5445-PD | 912 | CG5445-RD | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1388 | 13..907 | 4460 | 99.9 | Plus |
CG5445-RF | 1740 | CG5445-RF | 187..1081 | 13..907 | 4460 | 99.9 | Plus |
CG5445-RD | 1995 | CG5445-RD | 442..1336 | 13..907 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 13..493 | 2390 | 99.8 | Plus |
X | 23542271 | X | 17304074..17304370 | 492..788 | 1485 | 100 | Plus |
X | 23542271 | X | 17304697..17304816 | 788..907 | 600 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 12:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 114..150 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 108..185 | 114 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 108..139 | 111 | 85.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 108..140 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 113..185 | 110 | 63 | Plus |
BS03883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:08 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PC | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:32 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PD | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:37 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 440..1336 | 10..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:04 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 440..1336 | 10..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:04 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17302909..17303390 | 10..492 | 99 | -> | Plus |
X | 17304075..17304370 | 493..788 | 100 | -> | Plus |
X | 17304698..17304816 | 789..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:37 Download gff for
BS03883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17196942..17197423 | 10..492 | 99 | -> | Plus |
arm_X | 17198108..17198403 | 493..788 | 100 | -> | Plus |
arm_X | 17198731..17198849 | 789..907 | 100 | | Plus |
BS03883.complete Sequence
944 bp (944 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634812
> BS03883.complete
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTGATAACCGCGCACACCCAATGAAAGCTTTCTAGACCAT
BS03883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 912 | CG5445-PG | 1..912 | 17..928 | 4560 | 100 | Plus |
CG5445-RF | 912 | CG5445-PF | 1..912 | 17..928 | 4560 | 100 | Plus |
CG5445-RD | 912 | CG5445-PD | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1409 | 13..928 | 4565 | 99.9 | Plus |
CG5445-RF | 1740 | CG5445-RF | 187..1102 | 13..928 | 4565 | 99.9 | Plus |
CG5445-RD | 1995 | CG5445-RD | 442..1357 | 13..928 | 4565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 13..493 | 2390 | 99.8 | Plus |
X | 23542271 | X | 17304074..17304370 | 492..788 | 1485 | 100 | Plus |
X | 23542271 | X | 17304697..17304837 | 788..928 | 705 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 114..150 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 108..185 | 114 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 108..139 | 111 | 85.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 108..140 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 113..185 | 110 | 63 | Plus |
BS03883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:13 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:55 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 382..1301 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:16 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 446..1356 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:14 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 382..1301 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:08 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 446..1356 | 17..927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:08 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17302915..17303390 | 17..492 | 100 | -> | Plus |
X | 17304075..17304370 | 493..788 | 100 | -> | Plus |
X | 17304698..17304836 | 789..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:16 Download gff for
BS03883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17198731..17198869 | 789..927 | 100 | | Plus |
arm_X | 17196948..17197423 | 17..492 | 100 | -> | Plus |
arm_X | 17198108..17198403 | 493..788 | 100 | -> | Plus |
BS03883.pep Sequence
Translation from 16 to 927
> BS03883.pep
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQ*
BS03883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PG | 303 | CG5445-PG | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PF | 303 | CG5445-PF | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PD | 303 | CG5445-PD | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PA | 303 | CG5445-PA | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PB | 303 | CG5445-PB | 1..303 | 1..303 | 1626 | 100 | Plus |