Clone Sequence Records
BS03886.3prime Sequence
879 bp (876 high quality bases) assembled on 2005-12-01
> BS03886.3prime
ATGGTCTAGAAAGCTTCTACTTGCTGGCAAACTGTATTACGCCATACTCG
CCAGTCAACATCCACTCCTTATCCTTGGCAAACAGTTGGTCCGCCACGCC
TGCACCCAATCCGCAGATCAGATCCGCTTTAATTGTGCGCAGAGTGCAGA
GATTGGAAGGACGAAAGCCCCTCAAGCAAGTTTCGAAGGACTCCGTGCTG
TCCCAGGAGAAGTCGCCTAACAACTTGCGATAGTTGAGGTCACCCTTGAA
GATAACCAGTTGCGCCTCCTTCAGGCGGTCGTAGAGTGAGGGATTTACCT
CTGGCATGCGATAGAACTCGTAGGGACTCGTCCAAAAGTGTTCCAGTGGC
GAAAGCTCGAACTTGCCCTCGGTCGTCAAACGCTGCCATTTTTTTCCGAC
CTCACTCAGCACAGGATCCGGATGGTCGGCCAGAAATTGAAGTGCCCAGT
GGAAGTCGTGCTCCATCACGTCCGAAATGAACCAAGGAATGGCCTTGGGA
TTGAAGCGCACCTTGGCAGCCAATCCCTTGTCGATAATGTACTCAGCCAG
AATGAGATCCGTGTACAGCTCATAGCCGGCGTTGTCGAAAATGATGTCCA
CAATGCCCTCTCCGGAGGCTCCGTCCAGGGCTTTCCATACCTCCGCGGTG
CCGTCGATTAGTAGCTTCTCCTCCAAATCCGTAACTTGGTCAAAGGCATT
GCCAGTGGGCTTCACCTGTTTGCCGGAGGTTATGGACAGATCGCATCGGT
TGCCCCACAAATTGAGTTTGATCAACTGGCGGAAGGTGTCCGAGTTTCGT
TCATTGTGCCGCGTAGCCTTGGCCACCGCCAGCATGGCGTCCACGCTCAG
TTTGGTCGCCGTCTGTTTCTGCTGGCTGA
BS03886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-PB | 1308 | CG11474-RB | 446..1308 | 879..17 | 4315 | 100 | Minus |
| CG11474-PA | 1311 | CG11474-RA | 449..1311 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1776 | CG11474-RC | 592..1455 | 879..16 | 4320 | 100 | Minus |
| CG11474-RA | 1520 | CG11474-RA | 517..1380 | 879..16 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22071765..22072476 | 168..879 | 3560 | 100 | Plus |
| 2R | 25286936 | 2R | 22071555..22071708 | 16..169 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:20:09 has no hits.
BS03886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:09 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-PA | 450..1311 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:33 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-PA | 450..1311 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:58 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 518..1380 | 16..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:38 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 518..1380 | 16..878 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:38 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22071555..22071707 | 16..168 | 100 | <- | Plus |
| 2R | 22071766..22072475 | 169..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:58 Download gff for
BS03886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17959060..17959212 | 16..168 | 100 | <- | Plus |
| arm_2R | 17959271..17959980 | 169..878 | 100 | | Plus |
BS03886.5prime Sequence
928 bp (868 high quality bases) assembled on 2005-11-29
> BS03886.5prime
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCATCCCAAGG
CCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCACTGGGCA
CTTCATTTTCTGGGCGACCATCCGGATC
BS03886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-PA | 1311 | CG11474-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
| CG11474-PB | 1308 | CG11474-RB | 203..823 | 222..842 | 3105 | 100 | Plus |
| CG11474-PB | 1308 | CG11474-RB | 1..196 | 17..212 | 980 | 100 | Plus |
| CG11474-PA | 1311 | CG11474-RA | 827..913 | 842..928 | 385 | 97.7 | Plus |
| CG11474-PB | 1308 | CG11474-RB | 824..910 | 842..928 | 385 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1776 | CG11474-RC | 139..1056 | 12..928 | 4520 | 99.6 | Plus |
| CG11474-RA | 1520 | CG11474-RA | 64..981 | 12..928 | 4520 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22072012..22072633 | 928..308 | 3030 | 99.5 | Minus |
| 2R | 25286936 | 2R | 22072961..22073067 | 212..106 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 22072798..22072895 | 308..211 | 490 | 100 | Minus |
| 2R | 25286936 | 2R | 22073211..22073305 | 106..12 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:14:36 has no hits.
BS03886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:10 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:34 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:36 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 58..981 | 3..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:03 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 58..981 | 3..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:03 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22072012..22072632 | 309..928 | 99 | <- | Minus |
| 2R | 22072798..22072894 | 212..308 | 100 | <- | Minus |
| 2R | 22072962..22073067 | 106..211 | 100 | <- | Minus |
| 2R | 22073212..22073311 | 3..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:36 Download gff for
BS03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17959517..17960137 | 309..928 | 99 | <- | Minus |
| arm_2R | 17960303..17960399 | 212..308 | 100 | <- | Minus |
| arm_2R | 17960467..17960572 | 106..211 | 100 | <- | Minus |
| arm_2R | 17960717..17960816 | 3..105 | 95 | | Minus |
BS03886.complete Sequence
1343 bp (1343 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634813
> BS03886.complete
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCCCAAG
GCCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCACTGGGC
ACTTCAATTTCTGGCCGACCATCCGGATCCTGTGCTGAGTGAGGTCGGAA
AAAAATGGCAGCGTTTGACGACCGAGGGCAAGTTCGAGCTTTCGCCACTG
GAACACTTTTGGACGAGTCCCTACGAGTTCTATCGCATGCCAGAGGTAAA
TCCCTCACTCTACGACCGCCTGAAGGAGGCGCAACTGGTTATCTTCAAGG
GTGACCTCAACTATCGCAAGTTGTTAGGCGACTTCTCCTGGGACAGCACG
GAGTCCTTCGAAACTTGCTTGAGGGGCTTTCGTCCTTCCAATCTCTGCAC
TCTGCGCACAATTAAAGCGGATCTGATCTGCGGATTGGGTGCAGGCGTGG
CGGACCAACTGTTTGCCAAGGATAAGGAGTGGATGTTGACTGGCGAGTAT
GGCGTAATACAGTTTGCCAGCAAGTAGAAGCTTTCTAGACCAT
BS03886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1311 | CG11474-PC | 1..1311 | 17..1327 | 6555 | 100 | Plus |
| CG11474-RA | 1311 | CG11474-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1776 | CG11474-RC | 139..1455 | 12..1328 | 6570 | 99.9 | Plus |
| CG11474-RA | 1520 | CG11474-RA | 64..1380 | 12..1328 | 6570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22071765..22072633 | 1176..308 | 4345 | 100 | Minus |
| 2R | 25286936 | 2R | 22071555..22071708 | 1328..1175 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 22072961..22073067 | 212..106 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 22072798..22072895 | 308..211 | 490 | 100 | Minus |
| 2R | 25286936 | 2R | 22073211..22073305 | 106..12 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:15:32 has no hits.
BS03886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:15 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 1..1311 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:57 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 133..1455 | 3..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:18 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 69..1379 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:15 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 133..1455 | 3..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:06 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 69..1379 | 17..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:06 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22071556..22071707 | 1176..1327 | 100 | <- | Minus |
| 2R | 22071766..22072632 | 309..1175 | 100 | <- | Minus |
| 2R | 22072798..22072894 | 212..308 | 100 | <- | Minus |
| 2R | 22072962..22073067 | 106..211 | 100 | <- | Minus |
| 2R | 22073212..22073300 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:18 Download gff for
BS03886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17959061..17959212 | 1176..1327 | 100 | <- | Minus |
| arm_2R | 17959271..17960137 | 309..1175 | 100 | <- | Minus |
| arm_2R | 17960303..17960399 | 212..308 | 100 | <- | Minus |
| arm_2R | 17960467..17960572 | 106..211 | 100 | <- | Minus |
| arm_2R | 17960717..17960805 | 17..105 | 100 | | Minus |
BS03886.pep Sequence
Translation from 16 to 1326
> BS03886.pep
MGSETDFDAKNGIVDGPTPPHTELAALYKQSFAYYTFRVRLPSTLATIAD
SLVKDKDVLLATYGAAAEADIEQTTKEVRQLRDDILSNGPLLPFGENDSD
SEVWNAFLEKLPKEKRTYFSVCWLYAECYMYRKISSIFRATAHLAAYDYF
SQQKQTATKLSVDAMLAVAKATRHNERNSDTFRQLIKLNLWGNRCDLSIT
SGKQVKPTGNAFDQVTDLEEKLLIDGTAEVWKALDGASGEGIVDIIFDNA
GYELYTDLILAEYIIDKGLAAKVRFNPKAIPWFISDVMEHDFHWALQFLA
DHPDPVLSEVGKKWQRLTTEGKFELSPLEHFWTSPYEFYRMPEVNPSLYD
RLKEAQLVIFKGDLNYRKLLGDFSWDSTESFETCLRGFRPSNLCTLRTIK
ADLICGLGAGVADQLFAKDKEWMLTGEYGVIQFASK*
BS03886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-PC | 436 | CG11474-PC | 1..436 | 1..436 | 2297 | 100 | Plus |
| CG11474-PA | 436 | CG11474-PA | 1..436 | 1..436 | 2297 | 100 | Plus |
| CG4161-PB | 484 | CG4161-PB | 7..444 | 3..433 | 997 | 43.2 | Plus |
| CG4161-PA | 484 | CG4161-PA | 7..444 | 3..433 | 997 | 43.2 | Plus |
| CG2921-PA | 478 | CG2921-PA | 34..469 | 5..433 | 989 | 42 | Plus |
