Clone BS03887 Report

Search the DGRC for BS03887

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptstmA-RA
Protein status:BS03887.pep: full length peptide match
Sequenced Size:2417

Clone Sequence Records

BS03887.complete Sequence

2417 bp assembled on 2009-12-07

GenBank Submission: KX796798

> BS03887.complete
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCACAGTACTCG
TATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAACTTCAAGTC
CTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAAAATTATAG
CTATTGCAGCGGGAGAAAGTGTCGGTCCCTCGGCCCTGGACATCATCAAC
AACCTGCTGACCCACCTGCGGACGAGTGTGAGCACTACCAGCGAGATAAC
ACCAGAGGAGTCACAATATCAGGAGGCGCTGATCAACGCACTAGGCGAAT
TTGCCAACCATCATCCCGACTATCAAAAGATCGAGATCATGCTGTTCATC
ATGAACACCGTGCCAGACCTGTCCAAGAAGAGCAAGGGAGATCAAATGCT
GCAGAACATTCTGCTTAAATCACTGCTCAAGGTTGGCACTCAGTACAGCA
CCGTCTCCTTCGAAAAGGCATTCCCCGCCTCCTTCCTGCAGCCGCTGCTC
AAGATGGCACGCGCTCCACACAATCCCACGCGCATGGTTGTGATGCAAAT
ATTGCAGGCCCTTCTAGATCGTCATCAGAACGAGCAGGTGCTCAGTAGCG
TGAGTGTGAAGCCATACCCGGCTCTCTCCCAAGAGCCGCCGTCGCGCTCC
GACATAATTTTCACGCACAAATACGGCGCCAACATCATGCAGGCGTTGAT
CGACTCCATGGCATTGTCGGATCGGGTTGACGCCCTGACCTCCAGTTTTA
ATACCGCTGCTCTACTCATCGTGGAAATGTCCTGCAACGAGACCGTGCAA
GAGTTTCTTCTGTTTATCCTCGGAATCCAGCAGGTAGCCTGCACCGTGGA
CACTCTGGGAAACGTGCACAAATGTAGTCTGCACGCCATCTCAATTGGCC
TGCTGGTGCTAATCTCGCGTGTTAGTGGCATCAACAACCTTCTGGAGTAT
GCTCAAAAGATAGTGGACGCACGGCGCGAGGAGGCCAGCCATTTCCTTCC
CCCACTGCTCGAGCCCAAGAAGCTAGCCGGAAAGACATTCAATCTACAGC
TGCCGCACTTGGCCATAGATAAGTTGGCGCTGGGCGAGTGCTTGCAGAAC
GCGGGCATGGACGCCCAACGCCTCAACACCGGTGCTCCGTACTCGCTTAA
CCAGACCGATCACCCAGGTCACCGCCACTCTTGGGTGGAGTCGGTAAGCA
ACCAGCTGACGCAGCGCAACAGCTCAGCGGATCTGACGGTGTACAACGGC
GATGTGGACAGCGTTAGCAGCTCGCCGGGAGTGTGCAAAAAGCTCCTTGC
GCCGGAGTTCAACTTCGATGCCATGAAGCGAGCACTGGCGGAGCCAACTG
AGGCCGCTAAGCGGGAGCAACGCGAGCGCCAGATGCAGATAGTGCGCACC
TTCCGCGAGGGCGAGTTTGACGACCTTATGAGACGCACAGAACCTAAGCA
CGATCTCATCCAGAACCGCCTTAACGAGCTTTTCAACTCGCTAGCCGTGG
AGCGTCAGATCACGCAAAGCGACACCAAGTCCAGTCAGTTGCAAGCCAGC
AATGAGAAGCCCATCTACGAGACGAACTTTCCGGAACTCTTCTACTACTA
AAAGCTTTCTAGACCAT

BS03887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2385 CG8739-PA 1..2385 17..2401 11925 100 Plus
stmA-RB 2463 CG8739-PB 86..2463 24..2401 11890 100 Plus
stmA-RD 2427 CG8739-PD 654..2427 628..2401 8870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2738 CG8739-RA 129..2514 17..2402 11930 100 Plus
stmA-RB 3116 CG8739-RB 514..2892 24..2402 11895 100 Plus
stmA-RD 2780 CG8739-RD 782..2556 628..2402 8875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8730749..8731612 1623..760 4320 100 Minus
2R 25286936 2R 8730064..8730689 2248..1623 3130 100 Minus
2R 25286936 2R 8732160..8732406 628..382 1235 100 Minus
2R 25286936 2R 8732676..8732881 228..23 1030 100 Minus
2R 25286936 2R 8729726..8729881 2402..2247 780 100 Minus
2R 25286936 2R 8732465..8732618 382..229 770 100 Minus
2R 25286936 2R 8731681..8731813 759..627 665 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:30:09 has no hits.

BS03887.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:49 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 184..2566 17..2399 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:40 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..2511 17..2399 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:05 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 184..2566 17..2399 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:48 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..2511 17..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:48 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729729..8729879 2249..2399 100 <- Minus
2R 8730064..8730688 1624..2248 100 <- Minus
2R 8730749..8731612 760..1623 100 <- Minus
2R 8731681..8731811 629..759 100 <- Minus
2R 8732160..8732405 383..628 100 <- Minus
2R 8732465..8732618 229..382 100 <- Minus
2R 8732676..8732885 17..228 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:40 Download gff for BS03887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4617234..4617384 2249..2399 100 <- Minus
arm_2R 4617569..4618193 1624..2248 100 <- Minus
arm_2R 4618254..4619117 760..1623 100 <- Minus
arm_2R 4619186..4619316 629..759 100 <- Minus
arm_2R 4619665..4619910 383..628 100 <- Minus
arm_2R 4619970..4620123 229..382 100 <- Minus
arm_2R 4620181..4620390 17..228 98   Minus

BS03887.3prime Sequence

800 bp (797 high quality bases) assembled on 2005-12-01

> BS03887.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGAAGAGTTCCGGAAAGTTCGTCTCG
TAGATGGGCTTCTCATTGCTGGCTTGCAACTGACTGGACTTGGTGTCGCT
TTGCGTGATCTGACGCTCCACGGCTAGCGAGTTGAAAAGCTCGTTAAGGC
GGTTCTGGATGAGATCGTGCTTAGGTTCTGTGCGTCTCATAAGGTCGTCA
AACTCGCCCTCGCGGAAGGTGCGCACTATCTGCATCTGGCGCTCGCGTTG
CTCCCGCTTAGCGGCCTCAGTTGGCTCCGCCAGTGCTCGCTTCATGGCAT
CGAAGTTGAACTCCGGCGCAAGGAGCTTTTTGCACACTCCCGGCGAGCTG
CTAACGCTGTCCACATCGCCGTTGTACACCGTCAGATCCGCTGAGCTGTT
GCGCTGCGTCAGCTGGTTGCTTACCGACTCCACCCAAGAGTGGCGGTGAC
CTGGGTGATCGGTCTGGTTAAGCGAGTACGGAGCACCGGTGTTGAGGCGT
TGGGCGTCCATGCCCGCGTTCTGCAAGCACTCGCCCAGCGCCAACTTATC
TATGGCCAAGTGCGGCAGCTGTAGATTGAATGTCTTTCCGGCTAGCTTCT
TGGGCTCGAGCAGTGGGGGAAGGAAATGGCTGGCCTCCTCGCGCCGTGCG
TCCACTATCTTTTGAGCATACTCCAGAAGGTTGTTGATGCCACTAACACG
CGAGATTAGCACCAGCAGGCCAATTGAGATGGCGTGCAGACTACATTTGT
GCACGTTTCCCAGAGTGTCCACGGTGCAGGCTACCTGCTGGATTCCGAGG

BS03887.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8739-PA 2385 cmp44E-RA 1602..2385 800..17 3920 100 Minus
CG8739-PB 2463 cmp44E-RB 1680..2463 800..17 3920 100 Minus
CG8739-PC 2505 cmp44E-RC 1722..2505 800..17 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RD 2780 CG8739-RD 1772..2556 800..16 3925 100 Minus
stmA-RC 3158 CG8739-RC 2150..2934 800..16 3925 100 Minus
stmA-RB 3116 CG8739-RB 2108..2892 800..16 3925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8730064..8730689 170..795 3130 100 Plus
2R 25286936 2R 8729726..8729881 16..171 780 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:59:11 has no hits.

BS03887.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:11 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1602..2385 17..800 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:36 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PC 1722..2505 17..800 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:31 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RB 2108..2892 16..800 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:17 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RB 2108..2892 16..800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:17 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8729726..8729879 16..169 100 <- Plus
2R 8730064..8730695 170..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:31 Download gff for BS03887.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4617231..4617384 16..169 100 <- Plus
arm_2R 4617569..4618200 170..800 99   Plus

BS03887.5prime Sequence

970 bp (860 high quality bases) assembled on 2005-12-01

> BS03887.5prime
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCACAGTACTCG
TATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAACTTCAAGTC
CTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAAAATTATAA
CTATTGCAGCGGGGAAAAAG

BS03887.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8739-PA 2385 cmp44E-RA 1..947 17..963 4710 99.8 Plus
CG8739-PB 2463 cmp44E-RB 86..1025 24..963 4675 99.8 Plus
CG8739-PC 2505 cmp44E-RC 86..691 24..629 3030 100 Plus
CG8739-PC 2505 cmp44E-RC 732..1067 628..963 1655 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2738 CG8739-RA 129..1075 17..963 4720 99.9 Plus
stmA-RB 3116 CG8739-RB 514..1453 24..963 4685 99.9 Plus
stmA-RD 2780 CG8739-RD 129..741 17..629 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8732160..8732406 628..382 1235 100 Minus
2R 25286936 2R 8732676..8732881 228..23 1030 100 Minus
2R 25286936 2R 8731409..8731612 963..760 1005 99.5 Minus
2R 25286936 2R 8732465..8732618 382..229 770 100 Minus
2R 25286936 2R 8731681..8731813 759..627 665 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:32:43 has no hits.

BS03887.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:12 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1..953 17..970 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:37 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1..953 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:01:47 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..1081 17..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:01 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..1081 17..970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:45:01 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8731403..8731612 760..970 98 <- Minus
2R 8731681..8731811 629..759 100 <- Minus
2R 8732160..8732405 383..628 100 <- Minus
2R 8732465..8732618 229..382 100 <- Minus
2R 8732676..8732881 23..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:01:47 Download gff for BS03887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4618908..4619117 760..970 98 <- Minus
arm_2R 4619186..4619316 629..759 100 <- Minus
arm_2R 4619665..4619910 383..628 100 <- Minus
arm_2R 4619970..4620123 229..382 100 <- Minus
arm_2R 4620181..4620386 23..228 100   Minus

BS03887.pep Sequence

Translation from 16 to 2400

> BS03887.pep
MPGCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKL
DRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESF
LRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSM
CHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLL
FNMQSGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHL
DRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTR
TSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQ
YQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILL
KSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALL
DRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMAL
SDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNV
HKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEP
KKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHP
GHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNF
DAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQN
RLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYY*

BS03887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-PA 794 CG8739-PA 1..794 1..794 4045 100 Plus
stmA-PB 820 CG8739-PB 30..820 4..794 4027 100 Plus
stmA-PD 808 CG8739-PD 1..808 1..794 4020 98.3 Plus
stmA-PC 834 CG8739-PC 30..834 4..794 4002 98.3 Plus