Clone Sequence Records
BS03887.complete Sequence
2417 bp assembled on 2009-12-07
GenBank Submission: KX796798
> BS03887.complete
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCACAGTACTCG
TATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAACTTCAAGTC
CTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAAAATTATAG
CTATTGCAGCGGGAGAAAGTGTCGGTCCCTCGGCCCTGGACATCATCAAC
AACCTGCTGACCCACCTGCGGACGAGTGTGAGCACTACCAGCGAGATAAC
ACCAGAGGAGTCACAATATCAGGAGGCGCTGATCAACGCACTAGGCGAAT
TTGCCAACCATCATCCCGACTATCAAAAGATCGAGATCATGCTGTTCATC
ATGAACACCGTGCCAGACCTGTCCAAGAAGAGCAAGGGAGATCAAATGCT
GCAGAACATTCTGCTTAAATCACTGCTCAAGGTTGGCACTCAGTACAGCA
CCGTCTCCTTCGAAAAGGCATTCCCCGCCTCCTTCCTGCAGCCGCTGCTC
AAGATGGCACGCGCTCCACACAATCCCACGCGCATGGTTGTGATGCAAAT
ATTGCAGGCCCTTCTAGATCGTCATCAGAACGAGCAGGTGCTCAGTAGCG
TGAGTGTGAAGCCATACCCGGCTCTCTCCCAAGAGCCGCCGTCGCGCTCC
GACATAATTTTCACGCACAAATACGGCGCCAACATCATGCAGGCGTTGAT
CGACTCCATGGCATTGTCGGATCGGGTTGACGCCCTGACCTCCAGTTTTA
ATACCGCTGCTCTACTCATCGTGGAAATGTCCTGCAACGAGACCGTGCAA
GAGTTTCTTCTGTTTATCCTCGGAATCCAGCAGGTAGCCTGCACCGTGGA
CACTCTGGGAAACGTGCACAAATGTAGTCTGCACGCCATCTCAATTGGCC
TGCTGGTGCTAATCTCGCGTGTTAGTGGCATCAACAACCTTCTGGAGTAT
GCTCAAAAGATAGTGGACGCACGGCGCGAGGAGGCCAGCCATTTCCTTCC
CCCACTGCTCGAGCCCAAGAAGCTAGCCGGAAAGACATTCAATCTACAGC
TGCCGCACTTGGCCATAGATAAGTTGGCGCTGGGCGAGTGCTTGCAGAAC
GCGGGCATGGACGCCCAACGCCTCAACACCGGTGCTCCGTACTCGCTTAA
CCAGACCGATCACCCAGGTCACCGCCACTCTTGGGTGGAGTCGGTAAGCA
ACCAGCTGACGCAGCGCAACAGCTCAGCGGATCTGACGGTGTACAACGGC
GATGTGGACAGCGTTAGCAGCTCGCCGGGAGTGTGCAAAAAGCTCCTTGC
GCCGGAGTTCAACTTCGATGCCATGAAGCGAGCACTGGCGGAGCCAACTG
AGGCCGCTAAGCGGGAGCAACGCGAGCGCCAGATGCAGATAGTGCGCACC
TTCCGCGAGGGCGAGTTTGACGACCTTATGAGACGCACAGAACCTAAGCA
CGATCTCATCCAGAACCGCCTTAACGAGCTTTTCAACTCGCTAGCCGTGG
AGCGTCAGATCACGCAAAGCGACACCAAGTCCAGTCAGTTGCAAGCCAGC
AATGAGAAGCCCATCTACGAGACGAACTTTCCGGAACTCTTCTACTACTA
AAAGCTTTCTAGACCAT
BS03887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stmA-RA | 2385 | CG8739-PA | 1..2385 | 17..2401 | 11925 | 100 | Plus |
stmA-RB | 2463 | CG8739-PB | 86..2463 | 24..2401 | 11890 | 100 | Plus |
stmA-RD | 2427 | CG8739-PD | 654..2427 | 628..2401 | 8870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stmA-RA | 2738 | CG8739-RA | 129..2514 | 17..2402 | 11930 | 100 | Plus |
stmA-RB | 3116 | CG8739-RB | 514..2892 | 24..2402 | 11895 | 100 | Plus |
stmA-RD | 2780 | CG8739-RD | 782..2556 | 628..2402 | 8875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8730749..8731612 | 1623..760 | 4320 | 100 | Minus |
2R | 25286936 | 2R | 8730064..8730689 | 2248..1623 | 3130 | 100 | Minus |
2R | 25286936 | 2R | 8732160..8732406 | 628..382 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 8732676..8732881 | 228..23 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 8729726..8729881 | 2402..2247 | 780 | 100 | Minus |
2R | 25286936 | 2R | 8732465..8732618 | 382..229 | 770 | 100 | Minus |
2R | 25286936 | 2R | 8731681..8731813 | 759..627 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:09 has no hits.
BS03887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:49 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 184..2566 | 17..2399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:40 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 129..2511 | 17..2399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:05 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 184..2566 | 17..2399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:48 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 129..2511 | 17..2399 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:48 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8729729..8729879 | 2249..2399 | 100 | <- | Minus |
2R | 8730064..8730688 | 1624..2248 | 100 | <- | Minus |
2R | 8730749..8731612 | 760..1623 | 100 | <- | Minus |
2R | 8731681..8731811 | 629..759 | 100 | <- | Minus |
2R | 8732160..8732405 | 383..628 | 100 | <- | Minus |
2R | 8732465..8732618 | 229..382 | 100 | <- | Minus |
2R | 8732676..8732885 | 17..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:40 Download gff for
BS03887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4617234..4617384 | 2249..2399 | 100 | <- | Minus |
arm_2R | 4617569..4618193 | 1624..2248 | 100 | <- | Minus |
arm_2R | 4618254..4619117 | 760..1623 | 100 | <- | Minus |
arm_2R | 4619186..4619316 | 629..759 | 100 | <- | Minus |
arm_2R | 4619665..4619910 | 383..628 | 100 | <- | Minus |
arm_2R | 4619970..4620123 | 229..382 | 100 | <- | Minus |
arm_2R | 4620181..4620390 | 17..228 | 98 | | Minus |
BS03887.3prime Sequence
800 bp (797 high quality bases) assembled on 2005-12-01
> BS03887.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGAAGAGTTCCGGAAAGTTCGTCTCG
TAGATGGGCTTCTCATTGCTGGCTTGCAACTGACTGGACTTGGTGTCGCT
TTGCGTGATCTGACGCTCCACGGCTAGCGAGTTGAAAAGCTCGTTAAGGC
GGTTCTGGATGAGATCGTGCTTAGGTTCTGTGCGTCTCATAAGGTCGTCA
AACTCGCCCTCGCGGAAGGTGCGCACTATCTGCATCTGGCGCTCGCGTTG
CTCCCGCTTAGCGGCCTCAGTTGGCTCCGCCAGTGCTCGCTTCATGGCAT
CGAAGTTGAACTCCGGCGCAAGGAGCTTTTTGCACACTCCCGGCGAGCTG
CTAACGCTGTCCACATCGCCGTTGTACACCGTCAGATCCGCTGAGCTGTT
GCGCTGCGTCAGCTGGTTGCTTACCGACTCCACCCAAGAGTGGCGGTGAC
CTGGGTGATCGGTCTGGTTAAGCGAGTACGGAGCACCGGTGTTGAGGCGT
TGGGCGTCCATGCCCGCGTTCTGCAAGCACTCGCCCAGCGCCAACTTATC
TATGGCCAAGTGCGGCAGCTGTAGATTGAATGTCTTTCCGGCTAGCTTCT
TGGGCTCGAGCAGTGGGGGAAGGAAATGGCTGGCCTCCTCGCGCCGTGCG
TCCACTATCTTTTGAGCATACTCCAGAAGGTTGTTGATGCCACTAACACG
CGAGATTAGCACCAGCAGGCCAATTGAGATGGCGTGCAGACTACATTTGT
GCACGTTTCCCAGAGTGTCCACGGTGCAGGCTACCTGCTGGATTCCGAGG
BS03887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8739-PA | 2385 | cmp44E-RA | 1602..2385 | 800..17 | 3920 | 100 | Minus |
CG8739-PB | 2463 | cmp44E-RB | 1680..2463 | 800..17 | 3920 | 100 | Minus |
CG8739-PC | 2505 | cmp44E-RC | 1722..2505 | 800..17 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stmA-RD | 2780 | CG8739-RD | 1772..2556 | 800..16 | 3925 | 100 | Minus |
stmA-RC | 3158 | CG8739-RC | 2150..2934 | 800..16 | 3925 | 100 | Minus |
stmA-RB | 3116 | CG8739-RB | 2108..2892 | 800..16 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8730064..8730689 | 170..795 | 3130 | 100 | Plus |
2R | 25286936 | 2R | 8729726..8729881 | 16..171 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:59:11 has no hits.
BS03887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:11 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8739-PA | 1602..2385 | 17..800 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:36 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8739-PC | 1722..2505 | 17..800 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:31 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RB | 2108..2892 | 16..800 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:17 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RB | 2108..2892 | 16..800 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:17 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8729726..8729879 | 16..169 | 100 | <- | Plus |
2R | 8730064..8730695 | 170..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:31 Download gff for
BS03887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4617231..4617384 | 16..169 | 100 | <- | Plus |
arm_2R | 4617569..4618200 | 170..800 | 99 | | Plus |
BS03887.5prime Sequence
970 bp (860 high quality bases) assembled on 2005-12-01
> BS03887.5prime
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCACAGTACTCG
TATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAACTTCAAGTC
CTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAAAATTATAA
CTATTGCAGCGGGGAAAAAG
BS03887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8739-PA | 2385 | cmp44E-RA | 1..947 | 17..963 | 4710 | 99.8 | Plus |
CG8739-PB | 2463 | cmp44E-RB | 86..1025 | 24..963 | 4675 | 99.8 | Plus |
CG8739-PC | 2505 | cmp44E-RC | 86..691 | 24..629 | 3030 | 100 | Plus |
CG8739-PC | 2505 | cmp44E-RC | 732..1067 | 628..963 | 1655 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stmA-RA | 2738 | CG8739-RA | 129..1075 | 17..963 | 4720 | 99.9 | Plus |
stmA-RB | 3116 | CG8739-RB | 514..1453 | 24..963 | 4685 | 99.9 | Plus |
stmA-RD | 2780 | CG8739-RD | 129..741 | 17..629 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8732160..8732406 | 628..382 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 8732676..8732881 | 228..23 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 8731409..8731612 | 963..760 | 1005 | 99.5 | Minus |
2R | 25286936 | 2R | 8732465..8732618 | 382..229 | 770 | 100 | Minus |
2R | 25286936 | 2R | 8731681..8731813 | 759..627 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:32:43 has no hits.
BS03887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:12 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8739-PA | 1..953 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:37 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8739-PA | 1..953 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:01:47 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 129..1081 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:01 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stmA-RA | 129..1081 | 17..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:45:01 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8731403..8731612 | 760..970 | 98 | <- | Minus |
2R | 8731681..8731811 | 629..759 | 100 | <- | Minus |
2R | 8732160..8732405 | 383..628 | 100 | <- | Minus |
2R | 8732465..8732618 | 229..382 | 100 | <- | Minus |
2R | 8732676..8732881 | 23..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:01:47 Download gff for
BS03887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4618908..4619117 | 760..970 | 98 | <- | Minus |
arm_2R | 4619186..4619316 | 629..759 | 100 | <- | Minus |
arm_2R | 4619665..4619910 | 383..628 | 100 | <- | Minus |
arm_2R | 4619970..4620123 | 229..382 | 100 | <- | Minus |
arm_2R | 4620181..4620386 | 23..228 | 100 | | Minus |
BS03887.pep Sequence
Translation from 16 to 2400
> BS03887.pep
MPGCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKL
DRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESF
LRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSM
CHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLL
FNMQSGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHL
DRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTR
TSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQ
YQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILL
KSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALL
DRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMAL
SDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNV
HKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEP
KKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHP
GHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNF
DAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQN
RLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYY*
BS03887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stmA-PA | 794 | CG8739-PA | 1..794 | 1..794 | 4045 | 100 | Plus |
stmA-PB | 820 | CG8739-PB | 30..820 | 4..794 | 4027 | 100 | Plus |
stmA-PD | 808 | CG8739-PD | 1..808 | 1..794 | 4020 | 98.3 | Plus |
stmA-PC | 834 | CG8739-PC | 30..834 | 4..794 | 4002 | 98.3 | Plus |