Clone BS03889 Report

Search the DGRC for BS03889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptexd-RA
Protein status:BS03889.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03889.3prime Sequence

823 bp (791 high quality bases) assembled on 2005-12-01

> BS03889.3prime
ATGGTCTAGAAAGCTTTCAGGGGCTTAGATCCTGATGGAGATTTGGGTCG
TAGCCGCCCATGCTGTTGTCGTACGGTTGCTGCTGGTCGTATCCGCCGGA
GCCCATTGGATAGCCCATGGAATCCTGTGGCGGAGCGGGTGACATCATGG
GTGTGGTTGTCCCGCTGGGTGGACCGGCCATGGAATACGGTGAAGCACCA
GCCGCCTTCTTGGCCGCATACAAATTGGCCTCCTCCTGTGCCTTACCAAT
GTTCTTCTTATAGCGAATACGCTTGTTGCCAAACCAATTCGATACTTGCG
AGACCGTGATGCCACACTTTCGTGCCAACTCCTCTTTGGCCTCTTCGGAT
GGATATGGGTTGCTCAAGTGACTGTAGAAGTACTCGTTGAGAATCTCGGA
TGCCTGCTTGCTGAAATTGCGGCGTTTGCGGCGTGCGTCCAGGAAACGCG
AACGAAGTATCATTACAGCCTCGCAGGTCGACTGCTTCAGCTGCATTTGT
ATGGAACTAAACTTTTTGTGGATGATCTGCACCATTCGCTCGATTTCCTT
TGGTGTAATGGGTCTCGTGCGACTCTGTTCGCGTAGAAGATTCATGACAT
GCGTGGTGAACTCGTTGCATGCCTGCTCGTACTTCTCCAATTCCTGGTGA
TATATTTGACGGATCTGTGCCAGCTTGGCACGGTAGTCGGAATGCTCAAT
GGCATTGTCAGCACCATCGATGGACAGGGAACCGCCCTGGCTGGCCGCAG
CCGCAGAGGCAGCCGCTGCTCCGCCACCGCCCTTCTCGGGTCCGGCCACG
CCCTCGGCAATCAGCATGTTGTC

BS03889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8933-PB 1131 exd-RB 325..1131 823..17 4035 100 Minus
CG8933-PA 1131 exd-RA 325..1131 823..17 4035 100 Minus
CG8933-PC 1131 exd-RC 325..1131 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
exd-RE 2883 CG8933-RE 540..1346 823..17 4035 100 Minus
exd-RD 2930 CG8933-RD 587..1393 823..17 4035 100 Minus
exd-RA 2386 CG8933-RA 556..1362 823..17 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15994684..15994972 305..17 1445 100 Minus
X 23542271 X 15994345..15994607 565..303 1315 100 Minus
X 23542271 X 15994024..15994283 823..564 1300 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:24:08 has no hits.

BS03889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:13 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
exd-PC 325..1131 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:38 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8933-PC 325..1131 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:42 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 556..1362 17..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:36 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 556..1362 17..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:36 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15994024..15994283 564..823 100 -> Minus
X 15994347..15994605 305..563 100 -> Minus
X 15994685..15994972 17..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:42 Download gff for BS03889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15888057..15888316 564..823 100 -> Minus
arm_X 15888380..15888638 305..563 100 -> Minus
arm_X 15888718..15889005 17..304 100   Minus

BS03889.5prime Sequence

904 bp (818 high quality bases) assembled on 2005-11-29

> BS03889.5prime
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCANACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGGCCAAAAGAGAGTTGGCACGAAAGTGT
GGCATCACGGTCTCGCAAGTATCGAATTGGTTTTGGCACAAGCGTATTCG
CTAT

BS03889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8933-PB 1131 exd-RB 1..813 17..829 4046 99.8 Plus
CG8933-PA 1131 exd-RA 1..813 17..829 4046 99.8 Plus
CG8933-PC 1131 exd-RC 1..813 17..829 4046 99.8 Plus
CG8933-PB 1131 exd-RB 817..867 833..883 255 100 Plus
CG8933-PA 1131 exd-RA 817..867 833..883 255 100 Plus
CG8933-PC 1131 exd-RC 817..867 833..883 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
exd-RE 2883 CG8933-RE 215..1103 16..904 4344 99.4 Plus
exd-RD 2930 CG8933-RD 262..1150 16..904 4344 99.4 Plus
exd-RA 2386 CG8933-RA 231..1119 16..904 4344 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15993964..15994283 281..600 1600 100 Plus
X 23542271 X 15993508..15993773 16..281 1330 100 Plus
X 23542271 X 15994345..15994607 599..861 1259 98.5 Plus
X 23542271 X 15994684..15994729 859..904 185 93.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:17:51 has no hits.

BS03889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:14 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-PC 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:40 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8933-PC 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:46 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 231..1119 16..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:03 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 231..1119 16..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:33:03 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15993508..15993773 16..281 100 -> Plus
X 15993965..15994283 282..600 100 -> Plus
X 15994347..15994605 601..859 98 -> Plus
X 15994685..15994729 860..904 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:46 Download gff for BS03889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15887541..15887806 16..281 100 -> Plus
arm_X 15887998..15888316 282..600 100 -> Plus
arm_X 15888380..15888638 601..859 98 -> Plus
arm_X 15888718..15888762 860..904 95   Plus

BS03889.complete Sequence

1163 bp (1163 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634814

> BS03889.complete
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGT
GGCATCACGGTCTCGCAAGTATCGAATTGGTTTGGCAACAAGCGTATTCG
CTATAAGAAGAACATTGGTAAGGCACAGGAGGAGGCCAATTTGTATGCGG
CCAAGAAGGCGGCTGGTGCTTCACCGTATTCCATGGCCGGTCCACCCAGC
GGGACAACCACACCCATGATGTCACCCGCTCCGCCACAGGATTCCATGGG
CTATCCAATGGGCTCCGGCGGATACGACCAGCAGCAACCGTACGACAACA
GCATGGGCGGCTACGACCCAAATCTCCATCAGGATCTAAGCCCCTGAAAG
CTTTCTAGACCAT

BS03889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
exd-RE 1131 CG8933-PE 1..1131 17..1147 5655 100 Plus
exd-RD 1131 CG8933-PD 1..1131 17..1147 5655 100 Plus
exd-RA 1131 CG8933-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
exd-RE 2883 CG8933-RE 215..1346 16..1147 5660 100 Plus
exd-RD 2930 CG8933-RD 262..1393 16..1147 5660 100 Plus
exd-RA 2386 CG8933-RA 231..1362 16..1147 5660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15993964..15994283 281..600 1600 100 Plus
X 23542271 X 15994684..15994972 859..1147 1445 100 Plus
X 23542271 X 15993508..15993773 16..281 1330 100 Plus
X 23542271 X 15994345..15994607 599..861 1315 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:06:16 has no hits.

BS03889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:16 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
exd-RC 1..1131 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:58 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
exd-RC 256..1387 16..1147 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:25 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
exd-RA 232..1361 17..1146 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:16 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
exd-RC 256..1387 16..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:27 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
exd-RA 232..1361 17..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:27 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
X 15993509..15993773 17..281 100 -> Plus
X 15993965..15994283 282..600 100 -> Plus
X 15994347..15994605 601..859 100 -> Plus
X 15994685..15994971 860..1146 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:25 Download gff for BS03889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15887542..15887806 17..281 100 -> Plus
arm_X 15887998..15888316 282..600 100 -> Plus
arm_X 15888380..15888638 601..859 100 -> Plus
arm_X 15888718..15889004 860..1146 100   Plus

BS03889.pep Sequence

Translation from 16 to 1146

> BS03889.pep
MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQI
MSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEP
PDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAI
EHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPK
EIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQAS
EILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI
GKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPMMSPAPPQDSMGYPMGS
GGYDQQQPYDNSMGGYDPNLHQDLSP*

BS03889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
exd-PE 376 CG8933-PE 1..376 1..376 1953 100 Plus
exd-PD 376 CG8933-PD 1..376 1..376 1953 100 Plus
exd-PA 376 CG8933-PA 1..376 1..376 1953 100 Plus
exd-PB 376 CG8933-PB 1..376 1..376 1953 100 Plus
hth-PA 472 CG17117-PA 351..457 239..372 155 30.6 Plus