Clone Sequence Records
BS03889.3prime Sequence
823 bp (791 high quality bases) assembled on 2005-12-01
> BS03889.3prime
ATGGTCTAGAAAGCTTTCAGGGGCTTAGATCCTGATGGAGATTTGGGTCG
TAGCCGCCCATGCTGTTGTCGTACGGTTGCTGCTGGTCGTATCCGCCGGA
GCCCATTGGATAGCCCATGGAATCCTGTGGCGGAGCGGGTGACATCATGG
GTGTGGTTGTCCCGCTGGGTGGACCGGCCATGGAATACGGTGAAGCACCA
GCCGCCTTCTTGGCCGCATACAAATTGGCCTCCTCCTGTGCCTTACCAAT
GTTCTTCTTATAGCGAATACGCTTGTTGCCAAACCAATTCGATACTTGCG
AGACCGTGATGCCACACTTTCGTGCCAACTCCTCTTTGGCCTCTTCGGAT
GGATATGGGTTGCTCAAGTGACTGTAGAAGTACTCGTTGAGAATCTCGGA
TGCCTGCTTGCTGAAATTGCGGCGTTTGCGGCGTGCGTCCAGGAAACGCG
AACGAAGTATCATTACAGCCTCGCAGGTCGACTGCTTCAGCTGCATTTGT
ATGGAACTAAACTTTTTGTGGATGATCTGCACCATTCGCTCGATTTCCTT
TGGTGTAATGGGTCTCGTGCGACTCTGTTCGCGTAGAAGATTCATGACAT
GCGTGGTGAACTCGTTGCATGCCTGCTCGTACTTCTCCAATTCCTGGTGA
TATATTTGACGGATCTGTGCCAGCTTGGCACGGTAGTCGGAATGCTCAAT
GGCATTGTCAGCACCATCGATGGACAGGGAACCGCCCTGGCTGGCCGCAG
CCGCAGAGGCAGCCGCTGCTCCGCCACCGCCCTTCTCGGGTCCGGCCACG
CCCTCGGCAATCAGCATGTTGTC
BS03889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8933-PB | 1131 | exd-RB | 325..1131 | 823..17 | 4035 | 100 | Minus |
CG8933-PA | 1131 | exd-RA | 325..1131 | 823..17 | 4035 | 100 | Minus |
CG8933-PC | 1131 | exd-RC | 325..1131 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 540..1346 | 823..17 | 4035 | 100 | Minus |
exd-RD | 2930 | CG8933-RD | 587..1393 | 823..17 | 4035 | 100 | Minus |
exd-RA | 2386 | CG8933-RA | 556..1362 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15994684..15994972 | 305..17 | 1445 | 100 | Minus |
X | 23542271 | X | 15994345..15994607 | 565..303 | 1315 | 100 | Minus |
X | 23542271 | X | 15994024..15994283 | 823..564 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:24:08 has no hits.
BS03889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:13 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-PC | 325..1131 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:38 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-PC | 325..1131 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:42 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 556..1362 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:36 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 556..1362 | 17..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:36 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15994024..15994283 | 564..823 | 100 | -> | Minus |
X | 15994347..15994605 | 305..563 | 100 | -> | Minus |
X | 15994685..15994972 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:42 Download gff for
BS03889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15888057..15888316 | 564..823 | 100 | -> | Minus |
arm_X | 15888380..15888638 | 305..563 | 100 | -> | Minus |
arm_X | 15888718..15889005 | 17..304 | 100 | | Minus |
BS03889.5prime Sequence
904 bp (818 high quality bases) assembled on 2005-11-29
> BS03889.5prime
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCANACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGGCCAAAAGAGAGTTGGCACGAAAGTGT
GGCATCACGGTCTCGCAAGTATCGAATTGGTTTTGGCACAAGCGTATTCG
CTAT
BS03889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8933-PB | 1131 | exd-RB | 1..813 | 17..829 | 4046 | 99.8 | Plus |
CG8933-PA | 1131 | exd-RA | 1..813 | 17..829 | 4046 | 99.8 | Plus |
CG8933-PC | 1131 | exd-RC | 1..813 | 17..829 | 4046 | 99.8 | Plus |
CG8933-PB | 1131 | exd-RB | 817..867 | 833..883 | 255 | 100 | Plus |
CG8933-PA | 1131 | exd-RA | 817..867 | 833..883 | 255 | 100 | Plus |
CG8933-PC | 1131 | exd-RC | 817..867 | 833..883 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 215..1103 | 16..904 | 4344 | 99.4 | Plus |
exd-RD | 2930 | CG8933-RD | 262..1150 | 16..904 | 4344 | 99.4 | Plus |
exd-RA | 2386 | CG8933-RA | 231..1119 | 16..904 | 4344 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993964..15994283 | 281..600 | 1600 | 100 | Plus |
X | 23542271 | X | 15993508..15993773 | 16..281 | 1330 | 100 | Plus |
X | 23542271 | X | 15994345..15994607 | 599..861 | 1259 | 98.5 | Plus |
X | 23542271 | X | 15994684..15994729 | 859..904 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:17:51 has no hits.
BS03889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:14 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-PC | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:40 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-PC | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:46 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 231..1119 | 16..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:03 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 231..1119 | 16..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:33:03 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15993508..15993773 | 16..281 | 100 | -> | Plus |
X | 15993965..15994283 | 282..600 | 100 | -> | Plus |
X | 15994347..15994605 | 601..859 | 98 | -> | Plus |
X | 15994685..15994729 | 860..904 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:46 Download gff for
BS03889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15887541..15887806 | 16..281 | 100 | -> | Plus |
arm_X | 15887998..15888316 | 282..600 | 100 | -> | Plus |
arm_X | 15888380..15888638 | 601..859 | 98 | -> | Plus |
arm_X | 15888718..15888762 | 860..904 | 95 | | Plus |
BS03889.complete Sequence
1163 bp (1163 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634814
> BS03889.complete
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGT
GGCATCACGGTCTCGCAAGTATCGAATTGGTTTGGCAACAAGCGTATTCG
CTATAAGAAGAACATTGGTAAGGCACAGGAGGAGGCCAATTTGTATGCGG
CCAAGAAGGCGGCTGGTGCTTCACCGTATTCCATGGCCGGTCCACCCAGC
GGGACAACCACACCCATGATGTCACCCGCTCCGCCACAGGATTCCATGGG
CTATCCAATGGGCTCCGGCGGATACGACCAGCAGCAACCGTACGACAACA
GCATGGGCGGCTACGACCCAAATCTCCATCAGGATCTAAGCCCCTGAAAG
CTTTCTAGACCAT
BS03889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 1131 | CG8933-PE | 1..1131 | 17..1147 | 5655 | 100 | Plus |
exd-RD | 1131 | CG8933-PD | 1..1131 | 17..1147 | 5655 | 100 | Plus |
exd-RA | 1131 | CG8933-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 215..1346 | 16..1147 | 5660 | 100 | Plus |
exd-RD | 2930 | CG8933-RD | 262..1393 | 16..1147 | 5660 | 100 | Plus |
exd-RA | 2386 | CG8933-RA | 231..1362 | 16..1147 | 5660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993964..15994283 | 281..600 | 1600 | 100 | Plus |
X | 23542271 | X | 15994684..15994972 | 859..1147 | 1445 | 100 | Plus |
X | 23542271 | X | 15993508..15993773 | 16..281 | 1330 | 100 | Plus |
X | 23542271 | X | 15994345..15994607 | 599..861 | 1315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:06:16 has no hits.
BS03889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:16 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:58 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 256..1387 | 16..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:25 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 232..1361 | 17..1146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:16 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 256..1387 | 16..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:27 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 232..1361 | 17..1146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:27 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15993509..15993773 | 17..281 | 100 | -> | Plus |
X | 15993965..15994283 | 282..600 | 100 | -> | Plus |
X | 15994347..15994605 | 601..859 | 100 | -> | Plus |
X | 15994685..15994971 | 860..1146 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:25 Download gff for
BS03889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15887542..15887806 | 17..281 | 100 | -> | Plus |
arm_X | 15887998..15888316 | 282..600 | 100 | -> | Plus |
arm_X | 15888380..15888638 | 601..859 | 100 | -> | Plus |
arm_X | 15888718..15889004 | 860..1146 | 100 | | Plus |
BS03889.pep Sequence
Translation from 16 to 1146
> BS03889.pep
MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQI
MSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEP
PDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAI
EHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPK
EIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQAS
EILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI
GKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPMMSPAPPQDSMGYPMGS
GGYDQQQPYDNSMGGYDPNLHQDLSP*
BS03889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-PE | 376 | CG8933-PE | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PD | 376 | CG8933-PD | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PA | 376 | CG8933-PA | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PB | 376 | CG8933-PB | 1..376 | 1..376 | 1953 | 100 | Plus |
hth-PA | 472 | CG17117-PA | 351..457 | 239..372 | 155 | 30.6 | Plus |