Clone Sequence Records
BS03890.3prime Sequence
917 bp (822 high quality bases) assembled on 2005-12-01
> BS03890.3prime
ATGGTCTAGAAAGCTTCTAACGAAAGTGCGTGCTGTAGAATTCGTGTAGG
CACTGGCTGATCTTGTCGCCCAGTGGACGTTCCAGGGGTCCACACGGGAT
GCTGGCGAGGAGTAGCCTGGCCTGCTTTTGGTCTGCACACTCCGCGTATG
CGTCCAGCAGCCAGCGTGGAGTGGGGTATCTTTCCACAATAGCCATGGCG
CGTTCGAGGGAAAGGGAATGCAGCTGTAGCAACTGTTGCACGAAAACCTC
GCGCACTGTGAGCTGGGCATTCTTTGCGGAATCCTCATATAGGGCCCGAA
ACTTGAGCAACCCCAGGTCGGAATGCGTGAGCAGGCAGGTGGATTGGTCG
ATGGCGCCGCGATCCACGCTGTGCAACTTCTTGCCGGCGAATATCTGGCC
AAGGGTGCGACTCATTCCGGCCAAATAGCTCATGGATCGGTAATGATTCG
CCGTGCGCACCACTCGGACACCAGTTTGAACTTTGGCATTAGTCAGAGCC
TGCTGCAAGGAGTCCAGTGGAAGGCCCAGCTGCTCGTTATCGCCATAGTC
CTCGACCAGGTAGATGATGTGCTGCAGGCCGCAGTGCTGCAGCCTGTGCT
TCTGTTCGTGGAAGCGACCATCCCGAATACTCGATGCCAGGTCGTCCATC
CTCTTGCGCTCCACAATGTAGGGTAAAACCAGTTCATTGCCCTCTTGATC
CTGGGCCACCCAAAGGAAATCGCCGATTGTCAGGCGACGCACTTCATGAC
GGGCTCCCAAGGACTCCAAGTAGCTCCTCGTCTGGTCCAGAACTCTCTTG
TTTTTGCCACTGGTTTCCTGAGTATCCACCAAAAGGAGTAACTGGAATTG
ACCTGGTTTCATTCGCACGACGCGCTCCCGCTCTTCAAGGGCTGCCAGCT
CCGCCAGATCTTTTTTG
BS03890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3026-PA | 1281 | mus81-RA | 381..1281 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus81-RA | 2155 | CG3026-RA | 500..1400 | 917..17 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 941574..942474 | 917..17 | 4505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:24:06 has no hits.
BS03890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:15 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-PA | 381..1281 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:41 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3026-PA | 381..1281 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:40 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 500..1404 | 11..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:35 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 500..1404 | 11..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:35 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 941574..942478 | 11..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:40 Download gff for
BS03890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 835607..836511 | 11..917 | 99 | | Minus |
BS03890.5prime Sequence
924 bp (810 high quality bases) assembled on 2005-11-29
> BS03890.5prime
GAAGTTATCAGTCGACATGGAGACCCGACTGGAAGTGCTCTTGCGGGAGC
CGAATCCATTGTTCACCCGTTGGCTGGAGCGCTGGCTGCGCGAAGCGGAG
CGCCGAGAACAGAAGTCCCAGTTTAGCCTGCGCCAGGCGTTGGAGTCCCT
AAAAAGCTACCCTCTGCCATTGGCCAGCGGACGAGACTGTTCCATTCTGC
GCGGCTTTGGGGGCACCCTCTGCCAGCTAATCGACGAGGAACTTCGCCAT
CACAGAGGCCTCCAATTGCTGCCACAGGAGGCCGTGGTTCAGGAGCGCTA
CGAGCAGCAGGTCCAGGCGGTAGTACGCAAGGTTCAGGAGAAGCAGCTGG
AACACCAGAAACGCCAGAATAAATGCGACAGGCCCAGGAAGCTAACCAAA
AAAGATCTGGCGGAGCTGGCAGCCCTTGAAGAGCGGGAGCGCGTCGTGCG
AATGAAACCAGGTCAATTCCAGTTACTCCTTTTGGTGGATACTCAGGAAA
CCAGTGGCAAAAACAAGAGAGTTCTGGACCAGACGAGGAGCTACTTGGAG
TCCTTGGGAGCCCGTCATGAAGTGCGTCGCCTGACAATCGGCGATTTCCT
TTGGGTGGCCCAGGATCAAGAGGGCAATGAACTGGTTTTACCCTACATTG
TGGAGCGCAAGAGGATGGACGACCTGGCATCGAGTATTCGGGATGGTCGC
TTCCACGAACAGAAGCACAGGCTGCAGCACTGCGGCCTGCAGCACATCAT
CTACCTGGTCGAGGACTATGGCGATAACGAGCAGCTGGGCCTTCCACTGG
ACTCCTTGCAGCAGGCTCTGACTAATGCCAAAGTTCAAACTGGTGTCCGA
GTGGTGCGCACGGCGAATCATTACCGATCCATGAGCTATTTGGCCGGGAT
GAGTCGCACCCCTGGCCAGATATT
BS03890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3026-PA | 1281 | mus81-RA | 1..908 | 17..924 | 4490 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus81-RA | 2155 | CG3026-RA | 120..1027 | 17..924 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 941194..942101 | 17..924 | 4510 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:14:24 has no hits.
BS03890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:16 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:42 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3026-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:34 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 116..1027 | 10..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:01 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 116..1027 | 10..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:01 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 941190..942101 | 10..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:34 Download gff for
BS03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 835223..836134 | 10..924 | 99 | | Plus |
BS03890.complete Sequence
1313 bp (1313 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634815
> BS03890.complete
GAAGTTATCAGTCGACATGGAGACCCGACTGGAAGTGCTCTTGCGGGAGC
CGAATCCATTGTTCACCCGTTGGCTGGAGCGCTGGCTGCGCGAAGCGGAG
CGCCGAGAACAGAAGTCCCAGTTTAGCCTGCGCCAGGCGTTGGAGTCCCT
AAAAAGCTACCCTCTGCCATTGGCCAGCGGACGAGACTGTTCCATTCTGC
GCGGCTTTGGGGGCACCCTCTGCCAGCTAATCGACGAGGAACTTCGCCAT
CACAGAGGCCTCCAATTGCTGCCACAGGAGGCCGTGGTTCAGGAGCGCTA
CGAGCAGCAGGTCCAGGCGGTAGTACGCAAGGTTCAGGAGAAGCAGCTGG
AACACCAGAAACGCCAGAATAAATGCGACAGGCCCAGGAAGCTAACCAAA
AAAGATCTGGCGGAGCTGGCAGCCCTTGAAGAGCGGGAGCGCGTCGTGCG
AATGAAACCAGGTCAATTCCAGTTACTCCTTTTGGTGGATACTCAGGAAA
CCAGTGGCAAAAACAAGAGAGTTCTGGACCAGACGAGGAGCTACTTGGAG
TCCTTGGGAGCCCGTCATGAAGTGCGTCGCCTGACAATCGGCGATTTCCT
TTGGGTGGCCCAGGATCAAGAGGGCAATGAACTGGTTTTACCCTACATTG
TGGAGCGCAAGAGGATGGACGACCTGGCATCGAGTATTCGGGATGGTCGC
TTCCACGAACAGAAGCACAGGCTGCAGCACTGCGGCCTGCAGCACATCAT
CTACCTGGTCGAGGACTATGGCGATAACGAGCAGCTGGGCCTTCCACTGG
ACTCCTTGCAGCAGGCTCTGACTAATGCCAAAGTTCAAACTGGTGTCCGA
GTGGTGCGCACGGCGAATCATTACCGATCCATGAGCTATTTGGCCGGAAT
GAGTCGCACCCTTGGCCAGATATTCGCCGGCAAGAAGTTGCACAGCGTGG
ATCGCGGCGCCATCGACCAATCCACCTGCCTGCTCACGCATTCCGACCTG
GGGTTGCTCAAGTTTCGGGCCCTATATGAGGATTCCGCAAAGAATGCCCA
GCTCACAGTGCGCGAGGTTTTCGTGCAACAGTTGCTACAGCTGCATTCCC
TTTCCCTCGAACGCGCCATGGCTATTGTGGAAAGATACCCCACTCCACGC
TGGCTGCTGGACGCATACGCGGAGTGTGCAGACCAAAAGCAGGCCAGGCT
ACTCCTCGCCAGCATCCCGTGTGGACCCCTGGAACGTCCACTGGGCGACA
AGATCAGCCAGTGCCTACACGAATTCTACAGCACGCACTTTCGTTAGAAG
CTTTCTAGACCAT
BS03890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus81-RA | 1281 | CG3026-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus81-RA | 2155 | CG3026-RA | 120..1400 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 941194..942474 | 17..1297 | 6405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:28:50 has no hits.
BS03890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:59 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 1..1281 | 17..1297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:38 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 134..1422 | 10..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:01 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 120..1400 | 17..1297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:59 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 134..1422 | 10..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:20 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus81-RA | 120..1400 | 17..1297 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:20 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 941194..942474 | 17..1297 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:01 Download gff for
BS03890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 835227..836507 | 17..1297 | 100 | | Plus |
BS03890.pep Sequence
Translation from 16 to 1296
> BS03890.pep
METRLEVLLREPNPLFTRWLERWLREAERREQKSQFSLRQALESLKSYPL
PLASGRDCSILRGFGGTLCQLIDEELRHHRGLQLLPQEAVVQERYEQQVQ
AVVRKVQEKQLEHQKRQNKCDRPRKLTKKDLAELAALEERERVVRMKPGQ
FQLLLLVDTQETSGKNKRVLDQTRSYLESLGARHEVRRLTIGDFLWVAQD
QEGNELVLPYIVERKRMDDLASSIRDGRFHEQKHRLQHCGLQHIIYLVED
YGDNEQLGLPLDSLQQALTNAKVQTGVRVVRTANHYRSMSYLAGMSRTLG
QIFAGKKLHSVDRGAIDQSTCLLTHSDLGLLKFRALYEDSAKNAQLTVRE
VFVQQLLQLHSLSLERAMAIVERYPTPRWLLDAYAECADQKQARLLLASI
PCGPLERPLGDKISQCLHEFYSTHFR*
BS03890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus81-PA | 426 | CG3026-PA | 1..426 | 1..426 | 2188 | 100 | Plus |
