Clone Sequence Records
BS03891.5prime Sequence
231 bp (229 high quality bases) assembled on 2005-12-01
> BS03891.5prime
GAAGTTATCAGTCGACATGGCCCATAACTACCTGCAGCCAGTGCACGATC
ACTTCGATGACGTGGACAGATTCGAGGACGTGGACGACGACCTATTCCTG
CAGAACAAACGGACGGGAGCAGCCAAGCTTCCGCAGCAGAGGAGCACCAA
TCCCTTCGAGATGGATGACGATGACGAAGAGGAGATAACCTCGTCGCCAT
CAGTGGCCGCACAGCGACTGGCCTATGCTGA
BS03891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11173-PA | 855 | usnp-RA | 1..215 | 17..231 | 1075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 118..332 | 17..231 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23844432..23844646 | 231..17 | 1075 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2179..2212 | 153..186 | 98 | 76.5 | Plus |
BS03891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:18 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-PA | 1..214 | 17..230 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:45 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11173-PA | 1..214 | 17..230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:12:32 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 110..331 | 9..230 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:44 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 110..331 | 9..230 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:44 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23844433..23844652 | 9..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:12:32 Download gff for
BS03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731956..19732175 | 9..230 | 98 | | Minus |
BS03891.3prime Sequence
283 bp (184 high quality bases) assembled on 2005-12-01
> BS03891.3prime
ATGGTCTAGAAAGCTTTCACTTCTTCAGAAGCTTGCTCATGTCCTTGTTC
TGCTTGTGAATCTTCAAGTCGACATCCTCAATTTTGTAGTTCATGTTATC
CAGCAATTCATTTTGCGACTCAATTTCGCCACCCAGATCGGTGGCCAGCA
TCTTCAGCACCGACAGGTTGCTGCACATCTCCTCCAGATTGGAATCGATC
TGGGCCTGAAAGGGATTGGCCGCCTGTCGCTGGGGCTGGTAGGTGCTGCT
GGGATCACCACGCAGCTGGCTAAACGGATGATT
BS03891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11173-PA | 855 | usnp-RA | 589..855 | 283..17 | 1285 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 706..973 | 283..16 | 1310 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23843722..23843989 | 16..283 | 1310 | 99.3 | Plus |
Blast to na_te.dros performed 2015-01-31 14:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 735..835 | 113..14 | 106 | 57.4 | Minus |
BS03891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:17 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-PA | 589..855 | 17..283 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:44 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11173-PA | 589..855 | 17..283 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:53 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 706..973 | 16..283 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:33 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 706..973 | 16..283 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:33 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23843722..23843989 | 16..283 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:53 Download gff for
BS03891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731245..19731512 | 16..283 | 99 | | Plus |
BS03891.complete Sequence
887 bp assembled on 2010-07-02
GenBank Submission: KX794776
> BS03891.complete
GAAGTTATCAGTCGACATGGCCCATAACTACCTGCAGCCAGTGCACGATC
ACTTCGATGACGTGGACAGATTCGAGGACGTGGACGACGACCTATTCCTG
CAGAACAAACGGACGGGAGCAGCCAAGCTTCCGCAGCAGAGGAGCACCAA
TCCCTTCGAGATGGATGACGATGACGAAGAGGAGATAACCTCGTCGCCAT
CAGTGGCCGCACAGCGACTGGCCTATGCTGAGAAGCGAAGGGCCATTGAG
CAGCGAACTCTGGACTCTACCAACAAAAGCTTGGGTCTGCTCTACGAAAC
CCAGGAGGTGGGTAAGGCGACGGCCGTGGAGCTGGCCAAGCAGCGGGAGC
AACTGGAGAAGACATCACATCAGTTGGACGAGATCAGCTCCACGCTGCGC
TTCAGCCAGCGCCATCTGACTGGTCTGAAGAGTGTCTTCGGCGGCCTCAA
GAACTACCTTTCGGGCAACAGGGACCAACCACCCACCGCGACTGGTTCGC
CCACGGGCAGTCAGTCCTCCCAGGAGGCCAATAGCAACATTAACCAGGGT
GCCTGTGGCGGTGCTAGCCCCTCGGCTCCGCTATCACCAGCGGAGCGCTA
CGACAATCATCCGGTTAGCCAGCTGCGTGGTGATCCCAGCAGCACCTACC
AGCCCCAGCGACAGGCGGCCAATCCCTTCCAGGCCCAGATCGATTCCAAT
CTGGAGGAGATGTGCAGCAACCTGTCGGTGCTGAAGATGCTGGCCACCGA
TCTGGGTGGCGAAATTGAGTCGCAAAATGAATTGCTGGATAACATGAACT
ACAAAATTGAGGATGTCGACTTGAAGATTCACAAGCAGAACAAGGACATG
AGCAAGCTTCTGAAGAAGTGAAAGCTTTCTAGACCAT
BS03891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 855 | CG11173-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 118..973 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23843722..23844310 | 872..284 | 2945 | 100 | Minus |
| 2R | 25286936 | 2R | 23844377..23844646 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:06 has no hits.
BS03891.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:54 Download gff for
BS03891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 80..933 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:15 Download gff for
BS03891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 118..971 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:21 Download gff for
BS03891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 118..971 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:21 Download gff for
BS03891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23844379..23844646 | 17..284 | 100 | | Minus |
| 2R | 23843724..23844309 | 285..870 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:15 Download gff for
BS03891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731247..19731832 | 285..870 | 100 | <- | Minus |
| arm_2R | 19731902..19732169 | 17..284 | 100 | | Minus |
BS03891.pep Sequence
Translation from 16 to 870
> BS03891.pep
MAHNYLQPVHDHFDDVDRFEDVDDDLFLQNKRTGAAKLPQQRSTNPFEMD
DDDEEEITSSPSVAAQRLAYAEKRRAIEQRTLDSTNKSLGLLYETQEVGK
ATAVELAKQREQLEKTSHQLDEISSTLRFSQRHLTGLKSVFGGLKNYLSG
NRDQPPTATGSPTGSQSSQEANSNINQGACGGASPSAPLSPAERYDNHPV
SQLRGDPSSTYQPQRQAANPFQAQIDSNLEEMCSNLSVLKMLATDLGGEI
ESQNELLDNMNYKIEDVDLKIHKQNKDMSKLLKK*
BS03891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-PA | 284 | CG11173-PA | 1..284 | 1..284 | 1457 | 100 | Plus |
| Snap24-PA | 212 | CG9474-PA | 7..211 | 59..283 | 174 | 25.3 | Plus |
