Clone Sequence Records
BS03892.3prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-01
> BS03892.3prime
ATGGTCTAGAAAGCTTTCAATATAAATAATCGTGCGGAAAGACGGCGCGT
GCGGGCAGATAGCAAGGATCATGTTGGTTGCGGTAGCGACGCGCCAGGAA
AACAGCCAGGACCTCAGTGAAGCTGAAGAAGATGCCCAGACCGCCGCACA
ACTTGAAGGCATAGTCGATCTTGTCCTCCAGTAGGGGTCCACATGGTTCG
CAACGGCAGTCCGGCTCGGACGAGTGGGCACAGCACTGTTGATTGATCAG
CTCGCACGAGGGCTCATTGGACGGGGGAACCACGGAAGTTGTGCTCGGTG
CGGTGGCATTGAATCCGCAGCATTTCAGACTATCCTGCACTTGTTTGCGC
AAATCCGTGGGCACCGTCATCCATCCTTGCTCGGCGAACTGCTGCTGCTG
TTCGGAGTTGACGGCCAAGCAGGAACTGGCGATGGAGAACTGGATCAGGA
ACAGCATGAACAGAATGATCATGTAGAAGAAGAGCATCACTTGGTGGTGC
TTGACGGCTCCGGCGAGTCCCAGCATGGATATGCATATGAGGATGACACC
GCAGGCCAGGATCCCGCCCACAATCGGCAGGTTGGTCACTATGGAGGCGG
CACGCGCGTACACGCCCACTCCAATCAGCAGGAATCCAATCATCACATAC
AAAATGTTGAGCGCAATTAGCGCGTTTTTCGAGCAGGTGAAACCGCCGCA
CATGTCGACTGATAACT
BS03892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6323-PA | 687 | Tsp97E-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
CG6323-PB | 747 | Tsp97E-RB | 1..591 | 703..113 | 2955 | 100 | Minus |
CG6323-PB | 747 | Tsp97E-RB | 652..747 | 112..17 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..803 | 704..16 | 3445 | 100 | Minus |
Tsp97E-RH | 2094 | CG6323-RH | 115..803 | 704..16 | 3445 | 100 | Minus |
Tsp97E-RA | 1433 | CG6323-RA | 115..803 | 704..16 | 3445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 111..475 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 26964118..26964286 | 476..644 | 845 | 100 | Plus |
3R | 32079331 | 3R | 26962355..26962453 | 16..114 | 495 | 100 | Plus |
3R | 32079331 | 3R | 26964643..26964703 | 644..704 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:45:17 has no hits.
BS03892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:19 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:46 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:33 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 16..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:13 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 16..713 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:13 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26964643..26964712 | 644..713 | 94 | | Plus |
3R | 26962355..26962451 | 16..112 | 100 | <- | Plus |
3R | 26963158..26963520 | 113..475 | 100 | <- | Plus |
3R | 26964118..26964285 | 476..643 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:33 Download gff for
BS03892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788077..22788173 | 16..112 | 100 | <- | Plus |
arm_3R | 22788880..22789242 | 113..475 | 100 | <- | Plus |
arm_3R | 22789840..22790007 | 476..643 | 100 | <- | Plus |
arm_3R | 22790365..22790434 | 644..713 | 94 | | Plus |
BS03892.5prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-01
> BS03892.5prime
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
TGAAAGCTTTCTAGACC
BS03892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6323-PA | 687 | Tsp97E-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG6323-PB | 747 | Tsp97E-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG6323-PB | 747 | Tsp97E-RB | 652..747 | 608..703 | 480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..803 | 16..704 | 3445 | 100 | Plus |
Tsp97E-RH | 2094 | CG6323-RH | 115..803 | 16..704 | 3445 | 100 | Plus |
Tsp97E-RA | 1433 | CG6323-RA | 115..803 | 16..704 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 609..245 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 26964118..26964286 | 244..76 | 845 | 100 | Minus |
3R | 32079331 | 3R | 26962355..26962453 | 704..606 | 495 | 100 | Minus |
3R | 32079331 | 3R | 26964643..26964703 | 76..16 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:18:29 has no hits.
BS03892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:20 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:48 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:54 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:31 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 7..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:31 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26962355..26962451 | 608..704 | 100 | <- | Minus |
3R | 26963158..26963520 | 245..607 | 100 | <- | Minus |
3R | 26964118..26964285 | 77..244 | 100 | <- | Minus |
3R | 26964643..26964712 | 7..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:54 Download gff for
BS03892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788077..22788173 | 608..704 | 100 | <- | Minus |
arm_3R | 22788880..22789242 | 245..607 | 100 | <- | Minus |
arm_3R | 22789840..22790007 | 77..244 | 100 | <- | Minus |
arm_3R | 22790365..22790434 | 7..76 | 94 | | Minus |
BS03892.complete Sequence
719 bp (719 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638773
> BS03892.complete
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
TGAAAGCTTTCTAGACCAT
BS03892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 687 | CG6323-PE | 1..687 | 17..703 | 3435 | 100 | Plus |
Tsp97E-RH | 687 | CG6323-PH | 1..687 | 17..703 | 3435 | 100 | Plus |
Tsp97E-RA | 687 | CG6323-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..803 | 16..704 | 3445 | 100 | Plus |
Tsp97E-RH | 2094 | CG6323-RH | 115..803 | 16..704 | 3445 | 100 | Plus |
Tsp97E-RA | 1433 | CG6323-RA | 115..803 | 16..704 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 609..245 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 26964118..26964286 | 244..76 | 845 | 100 | Minus |
3R | 32079331 | 3R | 26962355..26962453 | 704..606 | 495 | 100 | Minus |
3R | 32079331 | 3R | 26964643..26964703 | 76..16 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:55 has no hits.
BS03892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:26 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:31 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 114..811 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:04 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 116..801 | 17..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:27 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 114..811 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:00 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 116..801 | 17..702 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:00 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26962357..26962451 | 608..702 | 100 | <- | Minus |
3R | 26963158..26963520 | 245..607 | 100 | <- | Minus |
3R | 26964118..26964285 | 77..244 | 100 | <- | Minus |
3R | 26964643..26964702 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:04 Download gff for
BS03892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788079..22788173 | 608..702 | 100 | <- | Minus |
arm_3R | 22788880..22789242 | 245..607 | 100 | <- | Minus |
arm_3R | 22789840..22790007 | 77..244 | 100 | <- | Minus |
arm_3R | 22790365..22790424 | 17..76 | 100 | | Minus |
BS03892.pep Sequence
Translation from 16 to 702
> BS03892.pep
MCGGFTCSKNALIALNILYVMIGFLLIGVGVYARAASIVTNLPIVGGILA
CGVILICISMLGLAGAVKHHQVMLFFYMIILFMLFLIQFSIASSCLAVNS
EQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVPPSNEPSC
ELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLA
VFLARRYRNQHDPCYLPARAVFPHDYLY*
BS03892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-PE | 228 | CG6323-PE | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PH | 228 | CG6323-PH | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PA | 228 | CG6323-PA | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PG | 221 | CG6323-PG | 1..218 | 1..218 | 1093 | 95.4 | Plus |
Tsp97E-PD | 221 | CG6323-PD | 1..218 | 1..218 | 1093 | 95.4 | Plus |