Clone BS03892 Report

Search the DGRC for BS03892

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptTsp97E-RA
Protein status:BS03892.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03892.3prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-01

> BS03892.3prime
ATGGTCTAGAAAGCTTTCAATATAAATAATCGTGCGGAAAGACGGCGCGT
GCGGGCAGATAGCAAGGATCATGTTGGTTGCGGTAGCGACGCGCCAGGAA
AACAGCCAGGACCTCAGTGAAGCTGAAGAAGATGCCCAGACCGCCGCACA
ACTTGAAGGCATAGTCGATCTTGTCCTCCAGTAGGGGTCCACATGGTTCG
CAACGGCAGTCCGGCTCGGACGAGTGGGCACAGCACTGTTGATTGATCAG
CTCGCACGAGGGCTCATTGGACGGGGGAACCACGGAAGTTGTGCTCGGTG
CGGTGGCATTGAATCCGCAGCATTTCAGACTATCCTGCACTTGTTTGCGC
AAATCCGTGGGCACCGTCATCCATCCTTGCTCGGCGAACTGCTGCTGCTG
TTCGGAGTTGACGGCCAAGCAGGAACTGGCGATGGAGAACTGGATCAGGA
ACAGCATGAACAGAATGATCATGTAGAAGAAGAGCATCACTTGGTGGTGC
TTGACGGCTCCGGCGAGTCCCAGCATGGATATGCATATGAGGATGACACC
GCAGGCCAGGATCCCGCCCACAATCGGCAGGTTGGTCACTATGGAGGCGG
CACGCGCGTACACGCCCACTCCAATCAGCAGGAATCCAATCATCACATAC
AAAATGTTGAGCGCAATTAGCGCGTTTTTCGAGCAGGTGAAACCGCCGCA
CATGTCGACTGATAACT

BS03892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6323-PA 687 Tsp97E-RA 1..687 703..17 3435 100 Minus
CG6323-PB 747 Tsp97E-RB 1..591 703..113 2955 100 Minus
CG6323-PB 747 Tsp97E-RB 652..747 112..17 480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..803 704..16 3445 100 Minus
Tsp97E-RH 2094 CG6323-RH 115..803 704..16 3445 100 Minus
Tsp97E-RA 1433 CG6323-RA 115..803 704..16 3445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 111..475 1825 100 Plus
3R 32079331 3R 26964118..26964286 476..644 845 100 Plus
3R 32079331 3R 26962355..26962453 16..114 495 100 Plus
3R 32079331 3R 26964643..26964703 644..704 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:45:17 has no hits.

BS03892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:19 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:46 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:33 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 16..713 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:13 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 16..713 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:13 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26964643..26964712 644..713 94   Plus
3R 26962355..26962451 16..112 100 <- Plus
3R 26963158..26963520 113..475 100 <- Plus
3R 26964118..26964285 476..643 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:33 Download gff for BS03892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788077..22788173 16..112 100 <- Plus
arm_3R 22788880..22789242 113..475 100 <- Plus
arm_3R 22789840..22790007 476..643 100 <- Plus
arm_3R 22790365..22790434 644..713 94   Plus

BS03892.5prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-01

> BS03892.5prime
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
TGAAAGCTTTCTAGACC

BS03892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6323-PA 687 Tsp97E-RA 1..687 17..703 3435 100 Plus
CG6323-PB 747 Tsp97E-RB 1..591 17..607 2955 100 Plus
CG6323-PB 747 Tsp97E-RB 652..747 608..703 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..803 16..704 3445 100 Plus
Tsp97E-RH 2094 CG6323-RH 115..803 16..704 3445 100 Plus
Tsp97E-RA 1433 CG6323-RA 115..803 16..704 3445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 609..245 1825 100 Minus
3R 32079331 3R 26964118..26964286 244..76 845 100 Minus
3R 32079331 3R 26962355..26962453 704..606 495 100 Minus
3R 32079331 3R 26964643..26964703 76..16 305 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:18:29 has no hits.

BS03892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:20 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:48 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:54 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 7..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:31 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 7..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:31 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26962355..26962451 608..704 100 <- Minus
3R 26963158..26963520 245..607 100 <- Minus
3R 26964118..26964285 77..244 100 <- Minus
3R 26964643..26964712 7..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:54 Download gff for BS03892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788077..22788173 608..704 100 <- Minus
arm_3R 22788880..22789242 245..607 100 <- Minus
arm_3R 22789840..22790007 77..244 100 <- Minus
arm_3R 22790365..22790434 7..76 94   Minus

BS03892.complete Sequence

719 bp (719 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638773

> BS03892.complete
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
TGAAAGCTTTCTAGACCAT

BS03892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 687 CG6323-PE 1..687 17..703 3435 100 Plus
Tsp97E-RH 687 CG6323-PH 1..687 17..703 3435 100 Plus
Tsp97E-RA 687 CG6323-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..803 16..704 3445 100 Plus
Tsp97E-RH 2094 CG6323-RH 115..803 16..704 3445 100 Plus
Tsp97E-RA 1433 CG6323-RA 115..803 16..704 3445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 609..245 1825 100 Minus
3R 32079331 3R 26964118..26964286 244..76 845 100 Minus
3R 32079331 3R 26962355..26962453 704..606 495 100 Minus
3R 32079331 3R 26964643..26964703 76..16 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:34:55 has no hits.

BS03892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:26 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:31 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 114..811 7..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:04 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 116..801 17..702 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:27 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 114..811 7..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:00 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 116..801 17..702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:00 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26962357..26962451 608..702 100 <- Minus
3R 26963158..26963520 245..607 100 <- Minus
3R 26964118..26964285 77..244 100 <- Minus
3R 26964643..26964702 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:04 Download gff for BS03892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788079..22788173 608..702 100 <- Minus
arm_3R 22788880..22789242 245..607 100 <- Minus
arm_3R 22789840..22790007 77..244 100 <- Minus
arm_3R 22790365..22790424 17..76 100   Minus

BS03892.pep Sequence

Translation from 16 to 702

> BS03892.pep
MCGGFTCSKNALIALNILYVMIGFLLIGVGVYARAASIVTNLPIVGGILA
CGVILICISMLGLAGAVKHHQVMLFFYMIILFMLFLIQFSIASSCLAVNS
EQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVPPSNEPSC
ELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLA
VFLARRYRNQHDPCYLPARAVFPHDYLY*

BS03892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-PE 228 CG6323-PE 1..228 1..228 1214 100 Plus
Tsp97E-PH 228 CG6323-PH 1..228 1..228 1214 100 Plus
Tsp97E-PA 228 CG6323-PA 1..228 1..228 1214 100 Plus
Tsp97E-PG 221 CG6323-PG 1..218 1..218 1093 95.4 Plus
Tsp97E-PD 221 CG6323-PD 1..218 1..218 1093 95.4 Plus