Clone BS03893 Report

Search the DGRC for BS03893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG1971-RA
Protein status:BS03893.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03893.3prime Sequence

822 bp (817 high quality bases) assembled on 2005-12-01

> BS03893.3prime
ATGGTCTAGAAAGCTTTTACCGATCGGCCCTTATATCCGCCCCCGATTCG
TTATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTA
GCCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACA
GGAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGA
CGGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAA
TGCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGA
GCTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCT
AGAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTC
CTGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCA
ATAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACG
GCGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGAT
CAGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCT
GCATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGAC
TGCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAG
GTTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAAT
TACTTAGAAAGACAGGAATTATATTTTCGCTCTCTGATGCTGAATTATTG
TCGGCCATGTCGACTGATAACT

BS03893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..792 808..17 3960 100 Minus
CG1971-PB 639 CG1971-RB 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..920 808..15 3970 100 Minus
CG1971-RB 1106 CG1971-RB 103..851 763..15 3745 100 Minus
CG1971-RC 1034 CG1971-RC 54..779 740..15 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806514 763..15 3745 100 Minus
3R 32079331 3R 31805594..31805639 808..763 230 100 Minus
Blast to na_te.dros performed on 2015-02-06 13:33:05 has no hits.

BS03893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:21 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:49 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:54:02 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 7..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:45 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 7..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:45 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 763..808 100 -> Minus
3R 31805767..31806522 7..762 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:54:02 Download gff for BS03893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 763..808 100 -> Minus
arm_3R 27631489..27632244 7..762 99   Minus

BS03893.5prime Sequence

822 bp (791 high quality bases) assembled on 2005-11-29

> BS03893.5prime
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGTAAAAGCTTTCTAGACC

BS03893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..792 17..808 3960 100 Plus
CG1971-PB 639 CG1971-RB 1..639 170..808 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..920 17..810 3970 100 Plus
CG1971-RB 1106 CG1971-RB 103..851 62..810 3745 100 Plus
CG1971-RC 1034 CG1971-RC 54..779 85..810 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806514 62..810 3745 100 Plus
3R 32079331 3R 31805594..31805639 17..62 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:24:14 has no hits.

BS03893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:22 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:51 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:03 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 17..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:16 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 17..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:16 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 17..62 100 -> Plus
3R 31805767..31806522 63..818 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:03 Download gff for BS03893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 17..62 100 -> Plus
arm_3R 27631489..27632244 63..818 99   Plus

BS03893.complete Sequence

824 bp (824 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634816

> BS03893.complete
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGTAAAAGCTTTCTAGACCAT

BS03893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 792 CG1971-PA 1..792 17..808 3960 100 Plus
CG1971-RD 639 CG1971-PD 1..639 170..808 3195 100 Plus
CG1971-RC 639 CG1971-PC 1..639 170..808 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..920 17..810 3970 100 Plus
CG1971-RB 1106 CG1971-RB 103..851 62..810 3745 100 Plus
CG1971-RC 1034 CG1971-RC 54..779 85..810 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806514 62..810 3745 100 Plus
3R 32079331 3R 31805594..31805639 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:22 has no hits.

BS03893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:00 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:59 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:27 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..916 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:00 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..928 17..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:38 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..916 17..806 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:38 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 17..62 100 -> Plus
3R 31805767..31806510 63..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:27 Download gff for BS03893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 17..62 100 -> Plus
arm_3R 27631489..27632232 63..806 100   Plus

BS03893.pep Sequence

Translation from 16 to 807

> BS03893.pep
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADR*

BS03893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 263 CG1971-PA 1..263 1..263 1341 100 Plus
CG1971-PD 212 CG1971-PD 1..212 52..263 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 52..263 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 52..263 1084 100 Plus