Clone Sequence Records
BS03893.3prime Sequence
822 bp (817 high quality bases) assembled on 2005-12-01
> BS03893.3prime
ATGGTCTAGAAAGCTTTTACCGATCGGCCCTTATATCCGCCCCCGATTCG
TTATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTA
GCCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACA
GGAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGA
CGGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAA
TGCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGA
GCTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCT
AGAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTC
CTGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCA
ATAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACG
GCGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGAT
CAGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCT
GCATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGAC
TGCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAG
GTTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAAT
TACTTAGAAAGACAGGAATTATATTTTCGCTCTCTGATGCTGAATTATTG
TCGGCCATGTCGACTGATAACT
BS03893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
CG1971-PB | 639 | CG1971-RB | 1..639 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..920 | 808..15 | 3970 | 100 | Minus |
CG1971-RB | 1106 | CG1971-RB | 103..851 | 763..15 | 3745 | 100 | Minus |
CG1971-RC | 1034 | CG1971-RC | 54..779 | 740..15 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806514 | 763..15 | 3745 | 100 | Minus |
3R | 32079331 | 3R | 31805594..31805639 | 808..763 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:33:05 has no hits.
BS03893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:21 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:49 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:54:02 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 7..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:45 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 7..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:45 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 763..808 | 100 | -> | Minus |
3R | 31805767..31806522 | 7..762 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:54:02 Download gff for
BS03893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 763..808 | 100 | -> | Minus |
arm_3R | 27631489..27632244 | 7..762 | 99 | | Minus |
BS03893.5prime Sequence
822 bp (791 high quality bases) assembled on 2005-11-29
> BS03893.5prime
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGTAAAAGCTTTCTAGACC
BS03893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG1971-PB | 639 | CG1971-RB | 1..639 | 170..808 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..920 | 17..810 | 3970 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 103..851 | 62..810 | 3745 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 54..779 | 85..810 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806514 | 62..810 | 3745 | 100 | Plus |
3R | 32079331 | 3R | 31805594..31805639 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:14 has no hits.
BS03893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:22 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:51 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:03 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:16 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 17..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:16 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 17..62 | 100 | -> | Plus |
3R | 31805767..31806522 | 63..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:03 Download gff for
BS03893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 17..62 | 100 | -> | Plus |
arm_3R | 27631489..27632244 | 63..818 | 99 | | Plus |
BS03893.complete Sequence
824 bp (824 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634816
> BS03893.complete
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGTAAAAGCTTTCTAGACCAT
BS03893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 792 | CG1971-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG1971-RD | 639 | CG1971-PD | 1..639 | 170..808 | 3195 | 100 | Plus |
CG1971-RC | 639 | CG1971-PC | 1..639 | 170..808 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..920 | 17..810 | 3970 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 103..851 | 62..810 | 3745 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 54..779 | 85..810 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806514 | 62..810 | 3745 | 100 | Plus |
3R | 32079331 | 3R | 31805594..31805639 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:22 has no hits.
BS03893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:00 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:59 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:27 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..916 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:00 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..928 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:38 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..916 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:38 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 17..62 | 100 | -> | Plus |
3R | 31805767..31806510 | 63..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:27 Download gff for
BS03893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 17..62 | 100 | -> | Plus |
arm_3R | 27631489..27632232 | 63..806 | 100 | | Plus |
BS03893.pep Sequence
Translation from 16 to 807
> BS03893.pep
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADR*
BS03893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 263 | CG1971-PA | 1..263 | 1..263 | 1341 | 100 | Plus |
CG1971-PD | 212 | CG1971-PD | 1..212 | 52..263 | 1084 | 100 | Plus |
CG1971-PC | 212 | CG1971-PC | 1..212 | 52..263 | 1084 | 100 | Plus |
CG1971-PB | 212 | CG1971-PB | 1..212 | 52..263 | 1084 | 100 | Plus |