Clone Sequence Records
BS03904.3prime Sequence
423 bp (422 high quality bases) assembled on 2005-12-01
> BS03904.3prime
ATGGTCTAGAAAGCTTCTAGAAGAAGAAGCCGAGAATTTTGCCTCCCAAA
TGTTTTCTCCTAGCCTCCTCGTGGTCCATGATGCCGCCAGAGGTGGTGAG
CACAACGTAACCAAACTGACGCGAGGGCAACAGATTGTTGGTCCACTTCT
CGATGTCGTTGATGGGCGCATCGAAGCGGGGCGAGATGACGCCGCACTTG
TTTAGCCGACCGGTCAGGTTGACAACGATCTTGCCGGCACGGTGATCCTC
GACGATCTCGAATTCGCCGATATAGCCATGCTTCATCATCACGGTCAGGA
ACTTGATGATCACCTTGGAGCAGGGACGCAGCAGCACCTGCCGCTTGCCA
CGCTTCTCGGCGTTGTTTATGCACTTCAGGGCATCGGCCAATACGTTCAT
ACGCACCATGTCGACTGATAACT
BS03904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12324-PA | 393 | RpS15Ab-RA | 1..393 | 409..17 | 1965 | 100 | Minus |
| CG2033-PC | 393 | RpS15Aa-RC | 1..393 | 409..17 | 1790 | 98.2 | Minus |
| CG2033-PA | 393 | RpS15Aa-RA | 1..393 | 409..17 | 1790 | 98.2 | Minus |
| CG2033-PD | 393 | RpS15Aa-RD | 1..393 | 409..17 | 1790 | 98.2 | Minus |
| CG2033-PE | 393 | RpS15Aa-RE | 1..393 | 409..17 | 1790 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..531 | 409..16 | 1970 | 100 | Minus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..463 | 410..16 | 1870 | 98.2 | Minus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..530 | 410..16 | 1870 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822206 | 409..16 | 1970 | 100 | Minus |
| X | 23542271 | X | 13335984..13336378 | 16..410 | 1870 | 98.2 | Plus |
| 2L | 23513712 | 2L | 14747017..14747075 | 16..74 | 265 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:13:40 has no hits.
BS03904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:26 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12324-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:55 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12324-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:01 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..531 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:30 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..531 | 16..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:30 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821808..10822206 | 16..417 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:01 Download gff for
BS03904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709313..6709711 | 16..417 | 99 | | Minus |
BS03904.5prime Sequence
423 bp (422 high quality bases) assembled on 2005-11-29
> BS03904.5prime
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCG
TTGTCAACCTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGCGCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCTAGAAGCTTTCTAGACC
BS03904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12324-PA | 393 | RpS15Ab-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
| CG2033-PC | 393 | RpS15Aa-RC | 1..393 | 17..409 | 1790 | 98.2 | Plus |
| CG2033-PA | 393 | RpS15Aa-RA | 1..393 | 17..409 | 1790 | 98.2 | Plus |
| CG2033-PD | 393 | RpS15Aa-RD | 1..393 | 17..409 | 1790 | 98.2 | Plus |
| CG2033-PE | 393 | RpS15Aa-RE | 1..393 | 17..409 | 1790 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..531 | 17..410 | 1970 | 100 | Plus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..463 | 16..410 | 1870 | 98.2 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..530 | 16..410 | 1870 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822206 | 17..410 | 1970 | 100 | Plus |
| X | 23542271 | X | 13335984..13336378 | 410..16 | 1870 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747017..14747075 | 410..352 | 265 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:27:00 has no hits.
BS03904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:27 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12324-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:52:56 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12324-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:33 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..531 | 9..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:04 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..531 | 9..410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:04 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821808..10822206 | 9..410 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:33 Download gff for
BS03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709313..6709711 | 9..410 | 99 | | Plus |
BS03904.complete Sequence
425 bp (425 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634817
> BS03904.complete
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCG
TTGTCAACCTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGCGCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCTAGAAGCTTTCTAGACCAT
BS03904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 393 | CG12324-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
| RpS15Aa-RF | 393 | CG2033-PF | 1..393 | 17..409 | 1860 | 98.2 | Plus |
| RpS15Aa-RE | 393 | CG2033-PE | 1..393 | 17..409 | 1860 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..531 | 17..410 | 1970 | 100 | Plus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..463 | 16..410 | 1870 | 98.2 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..530 | 16..410 | 1870 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822206 | 17..410 | 1970 | 100 | Plus |
| X | 23542271 | X | 13335984..13336378 | 410..16 | 1870 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747017..14747075 | 410..352 | 265 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:03 has no hits.
BS03904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:02 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:40 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..536 | 9..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:22 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..530 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:02 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..536 | 9..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:16 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..530 | 17..409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:16 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821813..10822205 | 17..409 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:22 Download gff for
BS03904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709318..6709710 | 17..409 | 100 | | Plus |
BS03904.pep Sequence
Translation from 16 to 408
> BS03904.pep
MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEF
EIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFG
YVVLTTSGGIMDHEEARRKHLGGKILGFFF*
BS03904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-PA | 130 | CG12324-PA | 1..130 | 1..130 | 680 | 100 | Plus |
| RpS15Aa-PF | 130 | CG2033-PF | 1..130 | 1..130 | 670 | 97.7 | Plus |
| RpS15Aa-PE | 130 | CG2033-PE | 1..130 | 1..130 | 670 | 97.7 | Plus |
| RpS15Aa-PD | 130 | CG2033-PD | 1..130 | 1..130 | 670 | 97.7 | Plus |
| RpS15Aa-PA | 130 | CG2033-PA | 1..130 | 1..130 | 670 | 97.7 | Plus |
