Clone Sequence Records
BS03907.3prime Sequence
573 bp (572 high quality bases) assembled on 2005-12-01
> BS03907.3prime
ATGGTCTAGAAAGCTTTTAGTAGTGGGCCACATGCGCGTGAGCGTTGTGG
GTGGCGTATCCGTAGGCGGGCACCTGATGCGCCAGGGATCCGGCGTAGGG
CACGGCGGGAGCGGCGGCCACATGGTGGGCAATGGCTGGGGCATAGGCCG
GAGCGGCATGGACCACGGCGGGAGCGGCGTGGGCAACCACAGCGGGAGCG
GCGTGGTGCACAGTGGGGCCGGTCTTGTGGACGACGGCGTTGAAGCCATT
GTGGTCATCGGCGGTGTACTCCACGGTGCGCACCGAACCATCGGGCTCCA
CCAGAGAGTAGGATCCCTTGACGACATCACCATCACGCACTTCGTGCTGC
GACTTCACGTCTCCGGTGTGAGAGTCAGCCACTCCGTAGTTGTAGTGGTA
CTTGGGGTAGGCATGGTAATCGATTCCCTCGTCGTGGTGACCATGGCCGG
CATAGATGGCCGGGGCGGCGGCGTAGAGACCAGCACCATGTCCGTGGAGG
ACTCCGGCGGAGGCGGCGCTCAGGACGGCCAGGCAGATGAGGGATTTGAA
GAATGCCATGTCGACTGATAACT
BS03907.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1919-PA | 543 | CG1919-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
| CG7072-PA | 1224 | CG7072-RA | 361..457 | 310..214 | 310 | 92.7 | Minus |
| CG9290-PA | 597 | CG9290-RA | 382..419 | 274..237 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..623 | 559..17 | 2715 | 100 | Minus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..623 | 559..17 | 2715 | 100 | Minus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 412..214 | 455 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840792..1841187 | 17..412 | 1980 | 100 | Plus |
| 3L | 28110227 | 3L | 1841760..1841892 | 412..544 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8337932..8338104 | 392..220 | 445 | 83.8 | Minus |
| 3L | 28110227 | 3L | 8326842..8326938 | 310..214 | 380 | 92.8 | Minus |
| 3L | 28110227 | 3L | 4211097..4211189 | 257..349 | 210 | 81.7 | Plus |
| 3L | 28110227 | 3L | 4216023..4216075 | 337..285 | 190 | 90.6 | Minus |
| 3L | 28110227 | 3L | 19520076..19520113 | 274..237 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:54:20 has no hits.
BS03907.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:29 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:53:00 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:29 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..623 | 17..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:06 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..623 | 17..567 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:06 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840792..1841187 | 17..412 | 100 | <- | Plus |
| 3L | 1841761..1841892 | 413..544 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:29 Download gff for
BS03907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840792..1841187 | 17..412 | 100 | <- | Plus |
| arm_3L | 1841761..1841892 | 413..544 | 100 | <- | Plus |
BS03907.5prime Sequence
573 bp (572 high quality bases) assembled on 2005-11-29
> BS03907.5prime
GAAGTTATCAGTCGACATGGCATTCTTCAAATCCCTCATCTGCCTGGCCG
TCCTGAGCGCCGCCTCCGCCGGAGTCCTCCACGGACATGGTGCTGGTCTC
TACGCCGCCGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGG
AATCGATTACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTG
ACTCTCACACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGAT
GTCGTCAAGGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCAC
CGTGGAGTACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACA
AGACCGGCCCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCC
GCTCCCGCCGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCA
CCATGTGGCCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATC
AGGTGCCCGCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCC
CACTACTAAAAGCTTTCTAGACC
BS03907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1919-PA | 543 | CG1919-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
| CG7072-PA | 1224 | CG7072-RA | 361..457 | 266..362 | 310 | 92.7 | Plus |
| CG9290-PA | 597 | CG9290-RA | 382..419 | 302..339 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..623 | 17..559 | 2715 | 100 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..623 | 17..559 | 2715 | 100 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 164..362 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840792..1841187 | 559..164 | 1980 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 164..32 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 184..356 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 266..362 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 319..227 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 239..291 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 302..339 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:34:23 has no hits.
BS03907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:35:30 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:53:02 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:23 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..623 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:26 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..623 | 9..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:26 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840792..1841187 | 164..559 | 100 | <- | Minus |
| 3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:23 Download gff for
BS03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840792..1841187 | 164..559 | 100 | <- | Minus |
| arm_3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
BS03907.complete Sequence
575 bp (575 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634818
> BS03907.complete
GAAGTTATCAGTCGACATGGCATTCTTCAAATCCCTCATCTGCCTGGCCG
TCCTGAGCGCCGCCTCCGCCGGAGTCCTCCACGGACATGGTGCTGGTCTC
TACGCCGCCGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGG
AATCGATTACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTG
ACTCTCACACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGAT
GTCGTCAAGGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCAC
CGTGGAGTACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACA
AGACCGGCCCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCC
GCTCCCGCCGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCA
CCATGTGGCCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATC
AGGTGCCCGCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCC
CACTACTAAAAGCTTTCTAGACCAT
BS03907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 543 | CG1919-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
| Cpr62Bc-RA | 543 | CG1919-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
| CG34461-RB | 417 | CG34461-PB | 142..340 | 164..362 | 455 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..623 | 17..559 | 2715 | 100 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..623 | 17..559 | 2715 | 100 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 164..362 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840792..1841187 | 559..164 | 1980 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 164..32 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 184..356 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 266..362 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 319..227 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 239..291 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 302..339 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:26:31 has no hits.
BS03907.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:03 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:42 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 71..619 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:11 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 81..621 | 17..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:03 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 71..619 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:39 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 81..621 | 17..557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:39 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
| 3L | 1840794..1841187 | 164..557 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:11 Download gff for
BS03907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840794..1841187 | 164..557 | 100 | <- | Minus |
| arm_3L | 1841761..1841892 | 32..163 | 100 | <- | Minus |
BS03907.pep Sequence
Translation from 16 to 558
> BS03907.pep
MAFFKSLICLAVLSAASAGVLHGHGAGLYAAAPAIYAGHGHHDEGIDYHA
YPKYHYNYGVADSHTGDVKSQHEVRDGDVVKGSYSLVEPDGSVRTVEYTA
DDHNGFNAVVHKTGPTVHHAAPAVVAHAAPAVVHAAPAYAPAIAHHVAAA
PAVPYAGSLAHQVPAYGYATHNAHAHVAHY*
BS03907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-PB | 180 | CG1919-PB | 1..180 | 1..180 | 972 | 100 | Plus |
| Cpr62Bc-PA | 180 | CG1919-PA | 1..180 | 1..180 | 972 | 100 | Plus |
| CG34461-PB | 138 | CG34461-PB | 2..138 | 5..146 | 359 | 54.7 | Plus |
| CG34461-PA | 138 | CG34461-PA | 2..138 | 5..146 | 359 | 54.7 | Plus |
| Cpr62Bb-PC | 194 | CG13935-PC | 3..194 | 6..180 | 355 | 42.6 | Plus |
