Clone BS03928 Report

Search the DGRC for BS03928

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:39
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG7214-RA
Protein status:BS03928.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03928.5prime Sequence

459 bp (458 high quality bases) assembled on 2005-11-29

> BS03928.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGTTGCCGTAGTCATGTTCGTGT
GCGCCCTGGCTGGAGCTCATGCCTCGTGGGCCCAGATCGCTCCCGGTGTG
TCCTATGTGAGCCCCGTGGCCCATGGAGCCGGTCTGTGGAACGGAGCCTG
GAATGGTGCCTGGAACGGTGCCTGGAACGGCGCCTGGAACGGTGCTCCCT
GGGGTGCCCCTGCCGCCGTTGCCGTCCATGCCAGCGCTGCTCCCTGGGGT
CTGACCGGTGCCGGATGGCACGGCGCTGCTGTTCCCGGAATCAACCTGGC
CCAGGGACCCGGTCTCGCCGCCGGCCATGGCCATGAGGGCGTCTATGTGG
CCAAGACCCGTGGTGCCATCCACACCGCTCCCCTCGCCGGACACATCAAC
TCTGCCACCTCCGTGAACGTGGCCCCTGCCCCCGGAACTCTGTAAAAGCT
TTCTAGACC

BS03928.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 429 CG7214-RA 1..429 17..445 2145 100 Plus
CG7216-PA 408 Acp1-RA 317..360 354..397 145 93.1 Plus
CG31904-PD 1212 CG31904-RD 980..1023 354..397 145 93.1 Plus
CG31904-PB 1212 CG31904-RB 980..1023 354..397 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..515 15..445 2155 100 Plus
Acp1-RA 858 CG7216-RA 369..416 350..397 180 91.7 Plus
CG31904-RB 3572 CG31904-RB 3087..3134 350..397 180 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744208..7744632 445..21 2125 100 Minus
2L 23513712 2L 7734853..7734900 397..350 180 91.7 Minus
2L 23513712 2L 7741004..7741051 397..350 180 91.7 Minus
Blast to na_te.dros performed on 2015-02-10 21:24:45 has no hits.

BS03928.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:02 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:53:46 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:06 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..515 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:57 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..515 9..445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:57 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7744208..7744632 21..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:06 Download gff for BS03928.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744208..7744632 21..445 100   Minus

BS03928.3prime Sequence

459 bp (458 high quality bases) assembled on 2005-12-01

> BS03928.3prime
ATGGTCTAGAAAGCTTTTACAGAGTTCCGGGGGCAGGGGCCACGTTCACG
GAGGTGGCAGAGTTGATGTGTCCGGCGAGGGGAGCGGTGTGGATGGCACC
ACGGGTCTTGGCCACATAGACGCCCTCATGGCCATGGCCGGCGGCGAGAC
CGGGTCCCTGGGCCAGGTTGATTCCGGGAACAGCAGCGCCGTGCCATCCG
GCACCGGTCAGACCCCAGGGAGCAGCGCTGGCATGGACGGCAACGGCGGC
AGGGGCACCCCAGGGAGCACCGTTCCAGGCGCCGTTCCAGGCACCGTTCC
AGGCACCATTCCAGGCTCCGTTCCACAGACCGGCTCCATGGGCCACGGGG
CTCACATAGGACACACCGGGAGCGATCTGGGCCCACGAGGCATGAGCTCC
AGCCAGGGCGCACACGAACATGACTACGGCAACGGCGAACTTCATGTCGA
CTGATAACT

BS03928.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 429 CG7214-RA 1..429 445..17 2145 100 Minus
CG7216-PA 408 Acp1-RA 317..360 108..65 145 93.1 Minus
CG31904-PD 1212 CG31904-RD 980..1023 108..65 145 93.1 Minus
CG31904-PB 1212 CG31904-RB 980..1023 108..65 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..515 447..17 2155 100 Minus
Acp1-RA 858 CG7216-RA 369..416 112..65 180 91.7 Minus
CG31904-RB 3572 CG31904-RB 3087..3134 112..65 180 91.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744208..7744632 17..441 2125 100 Plus
2L 23513712 2L 7734853..7734900 65..112 180 91.7 Plus
2L 23513712 2L 7741004..7741051 65..112 180 91.7 Plus
Blast to na_te.dros performed on 2015-02-11 18:13:14 has no hits.

BS03928.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:01 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:53:44 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:57 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..515 17..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:37 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..515 17..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:37 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7744208..7744632 17..441 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:57 Download gff for BS03928.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744208..7744632 17..441 100   Plus

BS03928.complete Sequence

461 bp (461 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634820

> BS03928.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGTTGCCGTAGTCATGTTCGTGT
GCGCCCTGGCTGGAGCTCATGCCTCGTGGGCCCAGATCGCTCCCGGTGTG
TCCTATGTGAGCCCCGTGGCCCATGGAGCCGGTCTGTGGAACGGAGCCTG
GAATGGTGCCTGGAACGGTGCCTGGAACGGCGCCTGGAACGGTGCTCCCT
GGGGTGCCCCTGCCGCCGTTGCCGTCCATGCCAGCGCTGCTCCCTGGGGT
CTGACCGGTGCCGGATGGCACGGCGCTGCTGTTCCCGGAATCAACCTGGC
CCAGGGACCCGGTCTCGCCGCCGGCCATGGCCATGAGGGCGTCTATGTGG
CCAAGACCCGTGGTGCCATCCACACCGCTCCCCTCGCCGGACACATCAAC
TCTGCCACCTCCGTGAACGTGGCCCCTGCCCCCGGAACTCTGTAAAAGCT
TTCTAGACCAT

BS03928.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 429 CG7214-PA 1..429 17..445 2145 100 Plus
Acp1-RA 408 CG7216-PA 313..360 350..397 180 91.7 Plus
CG31904-RB 1212 CG31904-PB 976..1023 350..397 180 91.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..515 15..445 2155 100 Plus
Acp1-RA 858 CG7216-RA 369..416 350..397 180 91.7 Plus
CG31904-RB 3572 CG31904-RB 3087..3134 350..397 180 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744208..7744632 445..21 2125 100 Minus
2L 23513712 2L 7734853..7734900 397..350 180 91.7 Minus
2L 23513712 2L 7741004..7741051 397..350 180 91.7 Minus
Blast to na_te.dros performed on 2014-11-26 16:00:17 has no hits.

BS03928.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:05 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:45 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 81..517 9..445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:53 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 87..513 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:05 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 81..517 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:59 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 87..513 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:59 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7744210..7744635 17..443 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:53 Download gff for BS03928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744210..7744635 17..443 99   Minus

BS03928.pep Sequence

Translation from 16 to 444

> BS03928.pep
MKFAVAVVMFVCALAGAHASWAQIAPGVSYVSPVAHGAGLWNGAWNGAWN
GAWNGAWNGAPWGAPAAVAVHASAAPWGLTGAGWHGAAVPGINLAQGPGL
AAGHGHEGVYVAKTRGAIHTAPLAGHINSATSVNVAPAPGTL*

BS03928.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 142 CG7214-PA 1..142 1..142 783 100 Plus
Acp1-PA 135 CG7216-PA 1..135 1..142 211 41.3 Plus
CG7203-PC 129 CG7203-PC 1..128 1..141 164 36.7 Plus
CG7203-PB 129 CG7203-PB 1..128 1..141 164 36.7 Plus
CG31904-PB 403 CG31904-PB 224..341 3..127 147 37.7 Plus