Clone Sequence Records
BS03947.3prime Sequence
426 bp (425 high quality bases) assembled on 2005-12-01
> BS03947.3prime
ATGGTCTAGAAAGCTTTCATGTACTGTTGTTGTTACTTTGCCGCGGCTTG
AGTATCAGCTTCCCCGTGTCGTCACAGCTCATATTAAAGTCTCCCAGTAC
CATTCGCGTTCTCGATGTAATTATTTGCGGAGCTATGACTAGTTTCTGTA
TGCCCAGGATGAACAGGACGACCAATGTTAGGGTGGCGACTGTGAAGACG
GGATGAATCCAGAGGGACTCCGTTAGCGGTACAACGGTGGTGCGCGGATC
GCGTAGCCAGTACCAGGCGCTGATGGCGGTGCACATGGACATGGCGGAAA
GGACAACTGCAAGAAGCTTGCGCCAGCGGAACGTCGAGGGACGGTACGAT
GAAACCACTTCGGTGAGGCGCCGCTCGAAGGCCTTGAGATCTTCGCAGGC
TGACGGTTCCATGTCGACTGATAACT
BS03947.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 396 | CG8009-RB | 1..396 | 412..17 | 1980 | 100 | Minus |
CG8009-PA | 384 | CG8009-RA | 95..384 | 306..17 | 1450 | 100 | Minus |
CG8009-PA | 384 | CG8009-RA | 1..94 | 412..319 | 470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..554 | 412..17 | 1980 | 100 | Minus |
CG8009-RA | 804 | CG8009-RA | 159..542 | 412..17 | 1790 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639369 | 172..17 | 780 | 100 | Minus |
3L | 28110227 | 3L | 10638554..10638700 | 318..172 | 735 | 100 | Minus |
3L | 28110227 | 3L | 10638421..10638494 | 392..319 | 370 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 13:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 329..366 | 111 | 79.5 | Plus |
BS03947.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:27 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:19 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:56:07 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 13..412 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:46:15 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 13..412 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:46:15 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 391..412 | 100 | -> | Minus |
3L | 10638423..10638494 | 319..390 | 100 | -> | Minus |
3L | 10638554..10638700 | 172..318 | 100 | -> | Minus |
3L | 10639215..10639371 | 13..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:56:07 Download gff for
BS03947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10631404..10631425 | 391..412 | 100 | -> | Minus |
arm_3L | 10631523..10631594 | 319..390 | 100 | -> | Minus |
arm_3L | 10631654..10631800 | 172..318 | 100 | -> | Minus |
arm_3L | 10632315..10632471 | 13..171 | 98 | | Minus |
BS03947.5prime Sequence
426 bp (409 high quality bases) assembled on 2005-11-29
> BS03947.5prime
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACATGAAAGCTTTCTAGACC
BS03947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 396 | CG8009-RB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG8009-PA | 384 | CG8009-RA | 95..384 | 123..412 | 1450 | 100 | Plus |
CG8009-PA | 384 | CG8009-RA | 1..94 | 17..110 | 470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..554 | 17..412 | 1980 | 100 | Plus |
CG8009-RA | 804 | CG8009-RA | 159..542 | 17..412 | 1790 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639369 | 257..412 | 780 | 100 | Plus |
3L | 28110227 | 3L | 10638554..10638700 | 111..257 | 735 | 100 | Plus |
3L | 28110227 | 3L | 10638421..10638494 | 37..110 | 370 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 100..63 | 111 | 79.5 | Minus |
BS03947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:28 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:20 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-PB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:54 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:48 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..556 | 17..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:48 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 17..38 | 100 | -> | Plus |
3L | 10638423..10638494 | 39..110 | 100 | -> | Plus |
3L | 10638554..10638700 | 111..257 | 100 | -> | Plus |
3L | 10639215..10639371 | 258..416 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:54 Download gff for
BS03947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10631404..10631425 | 17..38 | 100 | -> | Plus |
arm_3L | 10631523..10631594 | 39..110 | 100 | -> | Plus |
arm_3L | 10631654..10631800 | 111..257 | 100 | -> | Plus |
arm_3L | 10632315..10632471 | 258..416 | 98 | | Plus |
BS03947.complete Sequence
428 bp (428 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634821
> BS03947.complete
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACATGAAAGCTTTCTAGACCAT
BS03947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 396 | CG8009-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG8009-RA | 384 | CG8009-PA | 1..384 | 17..412 | 1765 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-RB | 863 | CG8009-RB | 159..554 | 17..412 | 1980 | 100 | Plus |
CG8009-RA | 804 | CG8009-RA | 159..542 | 17..412 | 1765 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10639214..10639369 | 257..412 | 780 | 100 | Plus |
3L | 28110227 | 3L | 10638554..10638700 | 111..257 | 735 | 100 | Plus |
3L | 28110227 | 3L | 10638421..10638494 | 37..110 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 100..63 | 111 | 79.5 | Minus |
BS03947.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:07 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:46 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 152..549 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:01 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..553 | 17..411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:07 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 152..549 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:38 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8009-RB | 159..553 | 17..411 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:38 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10638304..10638325 | 17..38 | 100 | -> | Plus |
3L | 10638423..10638494 | 39..110 | 100 | -> | Plus |
3L | 10638554..10638700 | 111..257 | 100 | -> | Plus |
3L | 10639215..10639368 | 258..411 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:01 Download gff for
BS03947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10632315..10632468 | 258..411 | 100 | | Plus |
arm_3L | 10631404..10631425 | 17..38 | 100 | -> | Plus |
arm_3L | 10631523..10631594 | 39..110 | 100 | -> | Plus |
arm_3L | 10631654..10631800 | 111..257 | 100 | -> | Plus |
BS03947.pep Sequence
Translation from 16 to 411
> BS03947.pep
MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAW
YWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITS
RTRMVLGDFNMSCDDTGKLILKPRQSNNNST*
BS03947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8009-PB | 131 | CG8009-PB | 1..131 | 1..131 | 673 | 100 | Plus |
CG8009-PA | 127 | CG8009-PA | 1..127 | 1..131 | 640 | 96.2 | Plus |
CG41106-PA | 123 | CG41106-PA | 1..122 | 1..126 | 189 | 36.5 | Plus |