Clone BS03947 Report

Search the DGRC for BS03947

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:39
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG8009-RB
Protein status:BS03947.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03947.3prime Sequence

426 bp (425 high quality bases) assembled on 2005-12-01

> BS03947.3prime
ATGGTCTAGAAAGCTTTCATGTACTGTTGTTGTTACTTTGCCGCGGCTTG
AGTATCAGCTTCCCCGTGTCGTCACAGCTCATATTAAAGTCTCCCAGTAC
CATTCGCGTTCTCGATGTAATTATTTGCGGAGCTATGACTAGTTTCTGTA
TGCCCAGGATGAACAGGACGACCAATGTTAGGGTGGCGACTGTGAAGACG
GGATGAATCCAGAGGGACTCCGTTAGCGGTACAACGGTGGTGCGCGGATC
GCGTAGCCAGTACCAGGCGCTGATGGCGGTGCACATGGACATGGCGGAAA
GGACAACTGCAAGAAGCTTGCGCCAGCGGAACGTCGAGGGACGGTACGAT
GAAACCACTTCGGTGAGGCGCCGCTCGAAGGCCTTGAGATCTTCGCAGGC
TGACGGTTCCATGTCGACTGATAACT

BS03947.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 396 CG8009-RB 1..396 412..17 1980 100 Minus
CG8009-PA 384 CG8009-RA 95..384 306..17 1450 100 Minus
CG8009-PA 384 CG8009-RA 1..94 412..319 470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..554 412..17 1980 100 Minus
CG8009-RA 804 CG8009-RA 159..542 412..17 1790 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639369 172..17 780 100 Minus
3L 28110227 3L 10638554..10638700 318..172 735 100 Minus
3L 28110227 3L 10638421..10638494 392..319 370 100 Minus
Blast to na_te.dros performed 2015-02-03 13:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 329..366 111 79.5 Plus

BS03947.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:27 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..412 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:19 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:56:07 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 13..412 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:46:15 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 13..412 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:46:15 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 391..412 100 -> Minus
3L 10638423..10638494 319..390 100 -> Minus
3L 10638554..10638700 172..318 100 -> Minus
3L 10639215..10639371 13..171 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:56:07 Download gff for BS03947.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10631404..10631425 391..412 100 -> Minus
arm_3L 10631523..10631594 319..390 100 -> Minus
arm_3L 10631654..10631800 172..318 100 -> Minus
arm_3L 10632315..10632471 13..171 98   Minus

BS03947.5prime Sequence

426 bp (409 high quality bases) assembled on 2005-11-29

> BS03947.5prime
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACATGAAAGCTTTCTAGACC

BS03947.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 396 CG8009-RB 1..396 17..412 1980 100 Plus
CG8009-PA 384 CG8009-RA 95..384 123..412 1450 100 Plus
CG8009-PA 384 CG8009-RA 1..94 17..110 470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..554 17..412 1980 100 Plus
CG8009-RA 804 CG8009-RA 159..542 17..412 1790 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639369 257..412 780 100 Plus
3L 28110227 3L 10638554..10638700 111..257 735 100 Plus
3L 28110227 3L 10638421..10638494 37..110 370 100 Plus
Blast to na_te.dros performed 2015-02-13 02:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 100..63 111 79.5 Minus

BS03947.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:28 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..412 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:20 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-PB 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:54 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 17..416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:48 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..556 17..416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:48 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 17..38 100 -> Plus
3L 10638423..10638494 39..110 100 -> Plus
3L 10638554..10638700 111..257 100 -> Plus
3L 10639215..10639371 258..416 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:54 Download gff for BS03947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10631404..10631425 17..38 100 -> Plus
arm_3L 10631523..10631594 39..110 100 -> Plus
arm_3L 10631654..10631800 111..257 100 -> Plus
arm_3L 10632315..10632471 258..416 98   Plus

BS03947.complete Sequence

428 bp (428 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634821

> BS03947.complete
GAAGTTATCAGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCT
TCGAGCGGCGCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTC
CGCTGGCGCAAGCTTCTTGCAGTTGTCCTTTCCGCCATGTCCATGTGCAC
CGCCATCAGCGCCTGGTACTGGCTACGCGATCCGCGCACCACCGTTGTAC
CGCTAACGGAGTCCCTCTGGATTCATCCCGTCTTCACAGTCGCCACCCTA
ACATTGGTCGTCCTGTTCATCCTGGGCATACAGAAACTAGTCATAGCTCC
GCAAATAATTACATCGAGAACGCGAATGGTACTGGGAGACTTTAATATGA
GCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGGCAAAGTAACAAC
AACAGTACATGAAAGCTTTCTAGACCAT

BS03947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 396 CG8009-PB 1..396 17..412 1980 100 Plus
CG8009-RA 384 CG8009-PA 1..384 17..412 1765 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-RB 863 CG8009-RB 159..554 17..412 1980 100 Plus
CG8009-RA 804 CG8009-RA 159..542 17..412 1765 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10639214..10639369 257..412 780 100 Plus
3L 28110227 3L 10638554..10638700 111..257 735 100 Plus
3L 28110227 3L 10638421..10638494 37..110 370 100 Plus
Blast to na_te.dros performed 2014-11-27 07:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 939..977 100..63 111 79.5 Minus

BS03947.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:07 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:46 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 152..549 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:01 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..553 17..411 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:07 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 152..549 17..416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:38 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
CG8009-RB 159..553 17..411 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:38 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10638304..10638325 17..38 100 -> Plus
3L 10638423..10638494 39..110 100 -> Plus
3L 10638554..10638700 111..257 100 -> Plus
3L 10639215..10639368 258..411 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:01 Download gff for BS03947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10632315..10632468 258..411 100   Plus
arm_3L 10631404..10631425 17..38 100 -> Plus
arm_3L 10631523..10631594 39..110 100 -> Plus
arm_3L 10631654..10631800 111..257 100 -> Plus

BS03947.pep Sequence

Translation from 16 to 411

> BS03947.pep
MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAW
YWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITS
RTRMVLGDFNMSCDDTGKLILKPRQSNNNST*

BS03947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8009-PB 131 CG8009-PB 1..131 1..131 673 100 Plus
CG8009-PA 127 CG8009-PA 1..127 1..131 640 96.2 Plus
CG41106-PA 123 CG41106-PA 1..122 1..126 189 36.5 Plus