Clone Sequence Records
BS03955.5prime Sequence
334 bp (332 high quality bases) assembled on 2005-12-01
> BS03955.5prime
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTAC
BS03955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8359-PA | 765 | CG8359-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hng2-RA | 1207 | CG8359-RA | 45..362 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8806366..8806579 | 17..230 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 8806631..8806736 | 229..334 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:14 has no hits.
BS03955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:35 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:29 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:35 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 45..362 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:31 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hng2-RA | 45..362 | 17..334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:31 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8806366..8806579 | 17..230 | 100 | -> | Plus |
| 3R | 8806633..8806736 | 231..334 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:35 Download gff for
BS03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4632088..4632301 | 17..230 | 100 | -> | Plus |
| arm_3R | 4632355..4632458 | 231..334 | 100 | | Plus |
BS03955.3prime Sequence
443 bp (378 high quality bases) assembled on 2005-12-01
> BS03955.3prime
ATGGTCTAGAAAGCTTTCAATTCGGCTTGAAGTTTCGTAGGATTTTCAGG
ACCTCGATCTGAAAGTCAAGCTTGCGATCGGCGCACATCTGCTGCATGTG
AGGCTTAATGGTGTCGAAGAAGGCCTGATCAGGATCGGCGGACAAGTAGG
CGGTATTTGTACTGCAGGGTGGATCTGATGGTAACTGTGGAATATATGCG
ATTTCCGGAGTGGCGGTGTCCTCCTTGGCGCAGCCCAGATCTCCCAGAAC
CGTATTTATGTTGCTTGGTATGGCTGGATTGCGGATGGCAGGCTCAATAT
TCGATTCTTGGTCGGAGTTTCTCTTTCGTGGAGTCTTTGCAGATCTCTGT
GCGGCAGTGCTCACTCGCTTCCGTTTGGCCTGGGGCTTGGGTTGCTCCTT
CAAGGATTCTACATCGTCCTCCGACTCTGCTTTCACGTTCAGC
BS03955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8359-PA | 765 | CG8359-RA | 339..765 | 443..17 | 2135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hng2-RA | 1207 | CG8359-RA | 383..810 | 443..16 | 2140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8806757..8807184 | 443..16 | 2140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:33:39 has no hits.
BS03955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:34 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-PA | 339..765 | 17..443 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:28 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-PA | 339..765 | 17..443 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:10 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 383..814 | 11..443 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:52 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hng2-RA | 383..814 | 11..443 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:52 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8806757..8807188 | 11..443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:10 Download gff for
BS03955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4632479..4632910 | 11..443 | 99 | | Minus |
BS03955.complete Sequence
797 bp assembled on 2007-10-17
GenBank Submission: KX796166
> BS03955.complete
GAAGTTATCAGTCGACATGGGCAATCATAAAGTTCTTCGATCGGCAGGAA
GCAATTTGCGCTATTCGATGTACGAGTTCATTGACGCGGTACACAAACGT
TCTATTATATGGGAACGAAGCCACCCAAACTTCCATAACCGCGAACTCAG
AGATGAGGCCTGGCAGCAAATTGGCCACGAGCTTTGCTCGAATTTTGACG
ACTCCAGCGAGCCGGAGAAGCAGGAAATAGTTAAAACACTGCTCAAACGT
TGGAAAAACACGAGGGACAGCTACCTACGGGTCAACCGACTACGTCAAAG
TGGCGAGGAGGTGGCCAGAGCTTCCTACATCTACGAAAAGGAACTGAGTT
TCCTGCTGAACGTGAAAGCAGAGTCGGAGGACGATGTAGAATCCTTGAAG
GAGCAACCCAAGCCCCAGGCCAAACGGAAGCGAGTGAGCACTGCCGCACA
GAGATCTGCAAAGACTCCACGAAAGAGAAACTCCGACCAAGAATCGAATA
TTGAGCCTGCCATCCGCAATCCAGCCATACCAAGCAACATAAATACGGTT
CTGGGAGATCTGGGCTGCGCCAAGGAGGACACCGCCACTCCGGAAATCGC
ATATATTCCACAGTTACCATCAGATCCACCCTGCAGTACAAATACCGCCT
ACTTGTCCGCCGATCCTGATCAGGCCTTCTTCGACACCATTAAGCCTCAC
ATGCAGCAGATGTGCGCCGATCGCAAGCTTGACTTTCAGATCGAGGTCCT
GAAAATCCTACGAAACTTCAAGCCGAATTGAAAGCTTTCTAGACCAT
BS03955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hng2-RA | 765 | CG8359-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hng2-RA | 1207 | CG8359-RA | 45..810 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8806631..8807184 | 229..782 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 8806366..8806579 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:43 has no hits.
BS03955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:29 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:16 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 32..801 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:40 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 45..808 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:52 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8359-RA | 32..795 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:53 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hng2-RA | 45..808 | 17..780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:53 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8806366..8806579 | 17..230 | 100 | -> | Plus |
| 3R | 8806633..8807182 | 231..780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:40 Download gff for
BS03955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4632088..4632301 | 17..230 | 100 | -> | Plus |
| arm_3R | 4632355..4632904 | 231..780 | 100 | | Plus |
BS03955.pep Sequence
Translation from 16 to 780
> BS03955.pep
MGNHKVLRSAGSNLRYSMYEFIDAVHKRSIIWERSHPNFHNRELRDEAWQ
QIGHELCSNFDDSSEPEKQEIVKTLLKRWKNTRDSYLRVNRLRQSGEEVA
RASYIYEKELSFLLNVKAESEDDVESLKEQPKPQAKRKRVSTAAQRSAKT
PRKRNSDQESNIEPAIRNPAIPSNINTVLGDLGCAKEDTATPEIAYIPQL
PSDPPCSTNTAYLSADPDQAFFDTIKPHMQQMCADRKLDFQIEVLKILRN
FKPN*
BS03955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hng2-PA | 254 | CG8359-PA | 1..254 | 1..254 | 1329 | 100 | Plus |
