Clone BS03971 Report

Search the DGRC for BS03971

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:39
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG7945-RA
Protein status:BS03971.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03971.3prime Sequence

819 bp (818 high quality bases) assembled on 2005-12-02

> BS03971.3prime
ATGGTCTAGAAAGCTTTTAATGGCTAACAGTTTGCTTATTCAGATAAGCC
ATTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCA
GCCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCT
CGGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAG
GCGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCAT
CTTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCT
GAGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGA
GAGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCT
CATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAA
GGTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCC
ACACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTT
AAATGGTCTGTCCAGAGCTCTACTATCGTCGACGAGTCCGTAGGAGCTGT
TCCCGCCATTGCCACCACCTCCGGATCCGGATGGGGATGAGGAGGCCATG
GCATCGGCCCTCAGGTCTTGCAAATGATCAAAATTCATGGATGCCTCCGA
GTGGTAATCGCTGGGCGAGATCTGATGCAGCTGCTGGTGATAAGTACTAT
GGTGATGATGATGAGTGTCACTGGTTTCCTGCGTTGTTGGCGCATCAACT
TCCATGTCGACTGATAACT

BS03971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 789 CG7945-RA 1..789 805..17 3945 100 Minus
CG7945-PB 747 CG7945-RB 205..747 559..17 2715 100 Minus
CG7945-PC 429 CG7945-RC 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1343 805..17 3945 100 Minus
CG7945-RB 1275 CG7945-RB 625..1167 559..17 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521819..15522197 17..395 1895 100 Plus
3L 28110227 3L 15522968..15523215 558..805 1240 100 Plus
3L 28110227 3L 15522360..15522504 394..538 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:12:33 has no hits.

BS03971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:54 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:55 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:51 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 11..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:44 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 11..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:44 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521812..15522195 11..393 98 <- Plus
3L 15522360..15522502 394..536 100 <- Plus
3L 15522560..15522580 537..557 100 <- Plus
3L 15522968..15523221 558..813 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:51 Download gff for BS03971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514912..15515295 11..393 98 <- Plus
arm_3L 15515460..15515602 394..536 100 <- Plus
arm_3L 15515660..15515680 537..557 100 <- Plus
arm_3L 15516068..15516321 558..813 98   Plus

BS03971.5prime Sequence

819 bp (818 high quality bases) assembled on 2005-11-29

> BS03971.5prime
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATTAAAAGCTTTCTAGACC

BS03971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 789 CG7945-RA 1..789 17..805 3945 100 Plus
CG7945-PB 747 CG7945-RB 205..747 263..805 2715 100 Plus
CG7945-PC 429 CG7945-RC 1..429 377..805 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1343 17..805 3945 100 Plus
CG7945-RB 1275 CG7945-RB 625..1167 263..805 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521819..15522197 805..427 1895 100 Minus
3L 28110227 3L 15522968..15523215 264..17 1240 100 Minus
3L 28110227 3L 15522360..15522504 428..284 725 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:17:35 has no hits.

BS03971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:55 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:57 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:43 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 9..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:13 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 9..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:13 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521812..15522195 429..811 98 <- Minus
3L 15522360..15522502 286..428 100 <- Minus
3L 15522560..15522580 265..285 100 <- Minus
3L 15522968..15523224 11..264 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:43 Download gff for BS03971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514912..15515295 429..811 98 <- Minus
arm_3L 15515460..15515602 286..428 100 <- Minus
arm_3L 15515660..15515680 265..285 100 <- Minus
arm_3L 15516068..15516324 11..264 97 <- Minus

BS03971.complete Sequence

821 bp (821 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634822

> BS03971.complete
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATTAAAAGCTTTCTAGACCAT

BS03971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 789 CG7945-PA 1..789 17..805 3945 100 Plus
CG7945-RB 747 CG7945-PB 205..747 263..805 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1343 17..805 3945 100 Plus
CG7945-RB 1275 CG7945-RB 625..1167 263..805 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521819..15522197 805..427 1895 100 Minus
3L 28110227 3L 15522968..15523215 264..17 1240 100 Minus
3L 28110227 3L 15522360..15522504 428..284 725 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:02:53 has no hits.

BS03971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:36 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:37 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 504..1300 9..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:24 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 555..1341 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:36 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 504..1300 9..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:07 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 555..1341 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:07 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521821..15522195 429..803 100 <- Minus
3L 15522360..15522502 286..428 100 <- Minus
3L 15522560..15522580 265..285 100 <- Minus
3L 15522968..15523215 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:24 Download gff for BS03971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514921..15515295 429..803 100 <- Minus
arm_3L 15515460..15515602 286..428 100 <- Minus
arm_3L 15515660..15515680 265..285 100 <- Minus
arm_3L 15516068..15516315 17..264 100   Minus

BS03971.pep Sequence

Translation from 16 to 804

> BS03971.pep
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSH*

BS03971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 262 CG7945-PA 1..262 1..262 1346 100 Plus
CG7945-PB 248 CG7945-PB 68..248 82..262 910 100 Plus