Clone Sequence Records
BS03971.3prime Sequence
819 bp (818 high quality bases) assembled on 2005-12-02
> BS03971.3prime
ATGGTCTAGAAAGCTTTTAATGGCTAACAGTTTGCTTATTCAGATAAGCC
ATTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCA
GCCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCT
CGGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAG
GCGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCAT
CTTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCT
GAGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGA
GAGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCT
CATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAA
GGTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCC
ACACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTT
AAATGGTCTGTCCAGAGCTCTACTATCGTCGACGAGTCCGTAGGAGCTGT
TCCCGCCATTGCCACCACCTCCGGATCCGGATGGGGATGAGGAGGCCATG
GCATCGGCCCTCAGGTCTTGCAAATGATCAAAATTCATGGATGCCTCCGA
GTGGTAATCGCTGGGCGAGATCTGATGCAGCTGCTGGTGATAAGTACTAT
GGTGATGATGATGAGTGTCACTGGTTTCCTGCGTTGTTGGCGCATCAACT
TCCATGTCGACTGATAACT
BS03971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 789 | CG7945-RA | 1..789 | 805..17 | 3945 | 100 | Minus |
CG7945-PB | 747 | CG7945-RB | 205..747 | 559..17 | 2715 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1343 | 805..17 | 3945 | 100 | Minus |
CG7945-RB | 1275 | CG7945-RB | 625..1167 | 559..17 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 17..395 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 15522968..15523215 | 558..805 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522504 | 394..538 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:12:33 has no hits.
BS03971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:54 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:55 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:51 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 11..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:44 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 11..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:44 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521812..15522195 | 11..393 | 98 | <- | Plus |
3L | 15522360..15522502 | 394..536 | 100 | <- | Plus |
3L | 15522560..15522580 | 537..557 | 100 | <- | Plus |
3L | 15522968..15523221 | 558..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:51 Download gff for
BS03971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514912..15515295 | 11..393 | 98 | <- | Plus |
arm_3L | 15515460..15515602 | 394..536 | 100 | <- | Plus |
arm_3L | 15515660..15515680 | 537..557 | 100 | <- | Plus |
arm_3L | 15516068..15516321 | 558..813 | 98 | | Plus |
BS03971.5prime Sequence
819 bp (818 high quality bases) assembled on 2005-11-29
> BS03971.5prime
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATTAAAAGCTTTCTAGACC
BS03971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 789 | CG7945-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG7945-PB | 747 | CG7945-RB | 205..747 | 263..805 | 2715 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..429 | 377..805 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1343 | 17..805 | 3945 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 625..1167 | 263..805 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 805..427 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15522968..15523215 | 264..17 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 428..284 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:17:35 has no hits.
BS03971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:36:55 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:54:57 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:43 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:13 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:13 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521812..15522195 | 429..811 | 98 | <- | Minus |
3L | 15522360..15522502 | 286..428 | 100 | <- | Minus |
3L | 15522560..15522580 | 265..285 | 100 | <- | Minus |
3L | 15522968..15523224 | 11..264 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:43 Download gff for
BS03971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514912..15515295 | 429..811 | 98 | <- | Minus |
arm_3L | 15515460..15515602 | 286..428 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 265..285 | 100 | <- | Minus |
arm_3L | 15516068..15516324 | 11..264 | 97 | <- | Minus |
BS03971.complete Sequence
821 bp (821 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634822
> BS03971.complete
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATTAAAAGCTTTCTAGACCAT
BS03971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 789 | CG7945-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG7945-RB | 747 | CG7945-PB | 205..747 | 263..805 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1343 | 17..805 | 3945 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 625..1167 | 263..805 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 805..427 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15522968..15523215 | 264..17 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 428..284 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:53 has no hits.
BS03971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:36 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:37 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 504..1300 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:24 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 555..1341 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:36 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 504..1300 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:07 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 555..1341 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:07 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521821..15522195 | 429..803 | 100 | <- | Minus |
3L | 15522360..15522502 | 286..428 | 100 | <- | Minus |
3L | 15522560..15522580 | 265..285 | 100 | <- | Minus |
3L | 15522968..15523215 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:24 Download gff for
BS03971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514921..15515295 | 429..803 | 100 | <- | Minus |
arm_3L | 15515460..15515602 | 286..428 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 265..285 | 100 | <- | Minus |
arm_3L | 15516068..15516315 | 17..264 | 100 | | Minus |
BS03971.pep Sequence
Translation from 16 to 804
> BS03971.pep
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSH*
BS03971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 262 | CG7945-PA | 1..262 | 1..262 | 1346 | 100 | Plus |
CG7945-PB | 248 | CG7945-PB | 68..248 | 82..262 | 910 | 100 | Plus |