Clone Sequence Records
BS03978.3prime Sequence
912 bp (882 high quality bases) assembled on 2005-12-02
> BS03978.3prime
ATGGTCTAGAAAGCTTTTAGTCCACGGACACTGTGCGCTGATTGACGTCG
ATCAAGTAGATGTCCTTGTGATTCTGCAGCACAAAGTCGACGAAAGCATT
GATGGGAGCGATCTCCTCCAGGGAGGTACTGGTGCTGCGCGACCACAGGA
AATTCGGACCGAACACGATGGCCAGGTTGGAGGAGGTCATCTTGTTCAGA
TCCTCGCAGTCCATCACCCTGACCAGGAACTCAACAATGTACTTGAACAG
TTCATAGTTCTCCTCTGGCAGTTTTTCGCGTATCAGTTGCGTCACGTTCC
TCGAACGCTCTTCCTTGGGCCAGTCTAGAAAACCGGTCACATCCTCGTAC
AGCTCGAAGGTGAGCAGCGGCTCGGCGAGATCGCGCAGGAAACTCTTCAG
CAGGCCGGCTATCACGTGGACATTAACGCTCTTCAGATCCACATCCTCGC
CGCGGTTGACGCGCTCCTTGAGCGCCATGATCTCCGAGTGATTGCCCGAT
CGACGGAATATGCCCTCCGTATCGATCACGCCCGTTATGGACAGCGAGTC
CACGCACTTGCGCACAATTGGCGGAATGGAGTTTAAGCACGGACTGTTCA
TCACAATGAATTTCAGGGGCACACCAAATTGATGCGTCGTCGCCATTTTG
TGCTGCTGCTGCCGGGATGCATTTATATTGCTGCTGGGCGGCGGTGTCGA
TGGCTTCCGGCTGGGGTTCAGTTTGTCGTCCAGGTCGCAGATGTTGTCCG
GCAACTTCAGCTTGTTCAGGCCGAGCGCCTGGCGCAACTCGTCCAAGCTG
GAGATGTAGACTAGCTTCTTGCGGAACTTGTCGCTAATGAACGGGCTAAA
GAAGTTCCAAATGACCCGTATGAACCACGTCGGATGAACCACATANCACG
TCTTCAGATTCT
BS03978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6811-PA | 1431 | RhoGAP68F-RA | 536..1431 | 912..17 | 4436 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP68F-RE | 2193 | CG6811-RE | 746..1641 | 912..17 | 4454 | 99.8 | Minus |
RhoGAP68F-RD | 2262 | CG6811-RD | 815..1710 | 912..17 | 4454 | 99.8 | Minus |
RhoGAP68F-RC | 2228 | CG6811-RC | 781..1676 | 912..17 | 4454 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12141933..12142828 | 912..17 | 4454 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:25:18 has no hits.
BS03978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:04 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6811-PA | 536..1431 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:08 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6811-PA | 536..1431 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:41 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RC | 781..1681 | 12..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:01 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RC | 781..1681 | 12..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:01 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12141933..12142833 | 12..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:41 Download gff for
BS03978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12135033..12135933 | 12..912 | 99 | | Minus |
BS03978.5prime Sequence
869 bp (838 high quality bases) assembled on 2005-11-29
> BS03978.5prime
GAAGTTATCAGTCGACATGGACGCCCATTCGCGTTTCGCGCCGAGATTAC
CAGGTCCCGCCATCAATCCGATCGTCGATAACTCGGATGAGCCCCAACCC
AGTCTCTCCGATCTGCACGACTTCGAGCCGAAGCTAGAGTTTGATGATAC
CGAGCTGCTGGCCCCATCTCCGCTTGAAAAAGATGTTATGGTCGGTGATT
TCGTTCTGGCCGAAGATCCAGAACTTGAGCCCGAGGAAGATGTAAATCCG
CTGGAGGACGACTTCGAGGACCAACTCAGGGAGCAGTCTGAAAACTTTCA
GACTCCCAGAAACAAATGCGATTTCCTGGGAACCGATAAGCAGGGTCGCC
ACATCTTTGGCATTTATGCATCCCGCTTTCCCGAAAAATCCCAACTGGAA
GGATTTGTGCGGGAAATCATCAAGGAGATCGAACCTTTTGTGGAGAACGA
CTACATTTTGGTTTACTTCCATCAAGGCCTCAAGGAGGACAACAAACCAT
CCGCACAGTTCCTGTGGAATTCGTACAAGGAGCTCGATCGCAACTTCCGC
AAGAATCTGAAGACGTTGTATGTGGTTCATCCGACGTGGTTCATACGGGT
CATTTGGAACTTCTTTAGCCCGTTCATTAGCGACAAGTTCCGCAAGAAGC
TAGTCTACATCTCCAGCTTGGACGAGTTGCGCCAGGCGCTCGGCCTGAAC
AAGCTGAAGTTGCCGGACAACATCTGCGACCTGGACGACAAACTGAACCC
CAGCCGGAAGCCATCGACACCGCCGCCCAGCAGCAATATAAATGCATCCC
GGCAGCAGCAGCACAAAATGGCGACGACGCATCAATTTGGTGTGCCCCTG
AAATTCATTGTGATGAACA
BS03978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6811-PA | 1431 | RhoGAP68F-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP68F-RD | 2262 | CG6811-RD | 279..1132 | 16..869 | 4270 | 100 | Plus |
RhoGAP68F-RA | 2196 | CG6811-RA | 213..1066 | 16..869 | 4270 | 100 | Plus |
RhoGAP68F-RE | 2193 | CG6811-RE | 213..1063 | 16..869 | 4215 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12141792..12142250 | 411..869 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 12141532..12141730 | 214..412 | 995 | 100 | Plus |
3L | 28110227 | 3L | 12141250..12141377 | 52..179 | 640 | 100 | Plus |
3L | 28110227 | 3L | 12140091..12140130 | 16..55 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:58:57 has no hits.
BS03978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:06 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6811-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:10 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6811-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:11 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 207..1065 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:23 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 207..1065 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:23 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12141252..12141377 | 54..179 | 100 | -> | Plus |
3L | 12141441..12141476 | 180..215 | 100 | -> | Plus |
3L | 12141534..12141729 | 216..411 | 100 | -> | Plus |
3L | 12140085..12140128 | 9..53 | 93 | -> | Plus |
3L | 12141793..12142249 | 412..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:11 Download gff for
BS03978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12133185..12133228 | 9..53 | 93 | -> | Plus |
arm_3L | 12134352..12134477 | 54..179 | 100 | -> | Plus |
arm_3L | 12134541..12134576 | 180..215 | 100 | -> | Plus |
arm_3L | 12134634..12134829 | 216..411 | 100 | -> | Plus |
arm_3L | 12134893..12135349 | 412..868 | 100 | | Plus |
BS03978.complete Sequence
1463 bp (1463 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634823
> BS03978.complete
GAAGTTATCAGTCGACATGGACGCCCATTCGCGTTTCGCGCCGAGATTAC
CAGGTCCCGCCATCAATCCGATCGTCGATAACTCGGATGAGCCCCAACCC
AGTCTCTCCGATCTGCACGACTTCGAGCCGAAGCTAGAGTTTGATGATAC
CGAGCTGCTGGCCCCATCTCCGCTTGAAAAAGATGTTATGGTCGGTGATT
TCGTTCTGGCCGAAGATCCAGAACTTGAGCCCGAGGAAGATGTAAATCCG
CTGGAGGACGACTTCGAGGACCAACTCAGGGAGCAGTCTGAAAACTTTCA
GACTCCCAGAAACAAATGCGATTTCCTGGGAACCGATAAGCAGGGTCGCC
ACATCTTTGGCATTTATGCATCCCGCTTTCCCGAAAAATCCCAACTGGAA
GGATTTGTGCGGGAAATCATCAAGGAGATCGAACCTTTTGTGGAGAACGA
CTACATTTTGGTTTACTTCCATCAAGGCCTCAAGGAGGACAACAAACCAT
CCGCACAGTTCCTGTGGAATTCGTACAAGGAGCTCGATCGCAACTTCCGC
AAGAATCTGAAGACGTTGTATGTGGTTCATCCGACGTGGTTCATACGGGT
CATTTGGAACTTCTTTAGCCCGTTCATTAGCGACAAGTTCCGCAAGAAGC
TAGTCTACATCTCCAGCTTGGACGAGTTGCGCCAGGCGCTCGGCCTGAAC
AAGCTGAAGTTGCCGGACAACATCTGCGACCTGGACGACAAACTGAACCC
CAGCCGGAAGCCATCGACACCGCCGCCCAGCAGCAATATAAATGCATCCC
GGCAGCAGCAGCACAAAATGGCGACGACGCATCAATTTGGTGTGCCCCTG
AAATTCATTGTGATGAACAGTCCGTGCTTAAACTCCATTCCGCCAATTGT
GCGCAAGTGCGTGGACTCGCTGTCCATAACGGGCGTGATCGATACGGAGG
GCATATTCCGTCGATCGGGCAATCACTCGGAGATCATGGCGCTCAAGGAG
CGCGTCAACCGCGGCGAGGATGTGGATCTGAAGAGCGTTAATGTCCACGT
GATAGCCGGCCTGCTGAAGAGTTTCCTGCGCGATCTCGCCGAGCCGCTGC
TCACCTTCGAGCTGTACGAGGATGTGACCGGTTTTCTAGACTGGCCCAAG
GAAGAGCGTTCGAGGAACGTGACGCAACTGATACGCGAAAAACTGCCAGA
GGAGAACTATGAACTGTTCAAGTACATTGTTGAGTTCCTGGTCAGGGTGA
TGGACTGCGAGGATCTGAACAAGATGACCTCCTCCAACCTGGCCATCGTG
TTCGGTCCGAATTTCCTGTGGTCGCGCAGCACCAGTACCTCCCTGGAGGA
GATCGCTCCCATCAATGCTTTCGTCGACTTTGTGCTGCAGAATCACAAGG
ACATCTACTTGATCGACGTCAATCAGCGCACAGTGTCCGTGGACTAAAAG
CTTTCTAGACCAT
BS03978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP68F-RD | 1431 | CG6811-PD | 1..1431 | 17..1447 | 7155 | 100 | Plus |
RhoGAP68F-RA | 1431 | CG6811-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
RhoGAP68F-RE | 1428 | CG6811-PE | 1..1428 | 17..1447 | 7075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP68F-RD | 2262 | CG6811-RD | 279..1710 | 16..1447 | 7160 | 100 | Plus |
RhoGAP68F-RA | 2196 | CG6811-RA | 213..1644 | 16..1447 | 7160 | 100 | Plus |
RhoGAP68F-RE | 2193 | CG6811-RE | 213..1641 | 16..1447 | 7080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12141792..12142828 | 411..1447 | 5185 | 100 | Plus |
3L | 28110227 | 3L | 12141532..12141730 | 214..412 | 995 | 100 | Plus |
3L | 28110227 | 3L | 12141250..12141377 | 52..179 | 640 | 100 | Plus |
3L | 28110227 | 3L | 12140091..12140130 | 16..55 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:14 has no hits.
BS03978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:08 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:48 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 202..1644 | 9..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:13 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 214..1642 | 17..1445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:08 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 202..1644 | 9..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:49 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP68F-RA | 214..1642 | 17..1445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:49 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12140092..12140128 | 17..53 | 100 | -> | Plus |
3L | 12141252..12141377 | 54..179 | 100 | -> | Plus |
3L | 12141441..12141476 | 180..215 | 100 | -> | Plus |
3L | 12141534..12141729 | 216..411 | 100 | -> | Plus |
3L | 12141793..12142826 | 412..1445 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:13 Download gff for
BS03978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12133192..12133228 | 17..53 | 100 | -> | Plus |
arm_3L | 12134352..12134477 | 54..179 | 100 | -> | Plus |
arm_3L | 12134541..12134576 | 180..215 | 100 | -> | Plus |
arm_3L | 12134634..12134829 | 216..411 | 100 | -> | Plus |
arm_3L | 12134893..12135926 | 412..1445 | 100 | | Plus |
BS03978.pep Sequence
Translation from 16 to 1446
> BS03978.pep
MDAHSRFAPRLPGPAINPIVDNSDEPQPSLSDLHDFEPKLEFDDTELLAP
SPLEKDVMVGDFVLAEDPELEPEEDVNPLEDDFEDQLREQSENFQTPRNK
CDFLGTDKQGRHIFGIYASRFPEKSQLEGFVREIIKEIEPFVENDYILVY
FHQGLKEDNKPSAQFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFF
SPFISDKFRKKLVYISSLDELRQALGLNKLKLPDNICDLDDKLNPSRKPS
TPPPSSNINASRQQQHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVD
SLSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDLKSVNVHVIAGLL
KSFLRDLAEPLLTFELYEDVTGFLDWPKEERSRNVTQLIREKLPEENYEL
FKYIVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLWSRSTSTSLEEIAPIN
AFVDFVLQNHKDIYLIDVNQRTVSVD*
BS03978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP68F-PD | 476 | CG6811-PD | 1..476 | 1..476 | 2496 | 100 | Plus |
RhoGAP68F-PA | 476 | CG6811-PA | 1..476 | 1..476 | 2496 | 100 | Plus |
RhoGAP68F-PE | 475 | CG6811-PE | 1..475 | 1..476 | 2474 | 99.6 | Plus |
RhoGAP68F-PC | 419 | CG6811-PC | 1..419 | 58..476 | 2193 | 100 | Plus |
RhoGAP5A-PA | 494 | CG3208-PA | 302..484 | 274..453 | 229 | 35.7 | Plus |