Clone BS03978 Report

Search the DGRC for BS03978

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:39
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGAP68F-RA
Protein status:BS03978.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03978.3prime Sequence

912 bp (882 high quality bases) assembled on 2005-12-02

> BS03978.3prime
ATGGTCTAGAAAGCTTTTAGTCCACGGACACTGTGCGCTGATTGACGTCG
ATCAAGTAGATGTCCTTGTGATTCTGCAGCACAAAGTCGACGAAAGCATT
GATGGGAGCGATCTCCTCCAGGGAGGTACTGGTGCTGCGCGACCACAGGA
AATTCGGACCGAACACGATGGCCAGGTTGGAGGAGGTCATCTTGTTCAGA
TCCTCGCAGTCCATCACCCTGACCAGGAACTCAACAATGTACTTGAACAG
TTCATAGTTCTCCTCTGGCAGTTTTTCGCGTATCAGTTGCGTCACGTTCC
TCGAACGCTCTTCCTTGGGCCAGTCTAGAAAACCGGTCACATCCTCGTAC
AGCTCGAAGGTGAGCAGCGGCTCGGCGAGATCGCGCAGGAAACTCTTCAG
CAGGCCGGCTATCACGTGGACATTAACGCTCTTCAGATCCACATCCTCGC
CGCGGTTGACGCGCTCCTTGAGCGCCATGATCTCCGAGTGATTGCCCGAT
CGACGGAATATGCCCTCCGTATCGATCACGCCCGTTATGGACAGCGAGTC
CACGCACTTGCGCACAATTGGCGGAATGGAGTTTAAGCACGGACTGTTCA
TCACAATGAATTTCAGGGGCACACCAAATTGATGCGTCGTCGCCATTTTG
TGCTGCTGCTGCCGGGATGCATTTATATTGCTGCTGGGCGGCGGTGTCGA
TGGCTTCCGGCTGGGGTTCAGTTTGTCGTCCAGGTCGCAGATGTTGTCCG
GCAACTTCAGCTTGTTCAGGCCGAGCGCCTGGCGCAACTCGTCCAAGCTG
GAGATGTAGACTAGCTTCTTGCGGAACTTGTCGCTAATGAACGGGCTAAA
GAAGTTCCAAATGACCCGTATGAACCACGTCGGATGAACCACATANCACG
TCTTCAGATTCT

BS03978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6811-PA 1431 RhoGAP68F-RA 536..1431 912..17 4436 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP68F-RE 2193 CG6811-RE 746..1641 912..17 4454 99.8 Minus
RhoGAP68F-RD 2262 CG6811-RD 815..1710 912..17 4454 99.8 Minus
RhoGAP68F-RC 2228 CG6811-RC 781..1676 912..17 4454 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12141933..12142828 912..17 4454 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 04:25:18 has no hits.

BS03978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:04 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6811-PA 536..1431 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:08 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6811-PA 536..1431 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:41 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RC 781..1681 12..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:01 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RC 781..1681 12..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:01 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12141933..12142833 12..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:41 Download gff for BS03978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12135033..12135933 12..912 99   Minus

BS03978.5prime Sequence

869 bp (838 high quality bases) assembled on 2005-11-29

> BS03978.5prime
GAAGTTATCAGTCGACATGGACGCCCATTCGCGTTTCGCGCCGAGATTAC
CAGGTCCCGCCATCAATCCGATCGTCGATAACTCGGATGAGCCCCAACCC
AGTCTCTCCGATCTGCACGACTTCGAGCCGAAGCTAGAGTTTGATGATAC
CGAGCTGCTGGCCCCATCTCCGCTTGAAAAAGATGTTATGGTCGGTGATT
TCGTTCTGGCCGAAGATCCAGAACTTGAGCCCGAGGAAGATGTAAATCCG
CTGGAGGACGACTTCGAGGACCAACTCAGGGAGCAGTCTGAAAACTTTCA
GACTCCCAGAAACAAATGCGATTTCCTGGGAACCGATAAGCAGGGTCGCC
ACATCTTTGGCATTTATGCATCCCGCTTTCCCGAAAAATCCCAACTGGAA
GGATTTGTGCGGGAAATCATCAAGGAGATCGAACCTTTTGTGGAGAACGA
CTACATTTTGGTTTACTTCCATCAAGGCCTCAAGGAGGACAACAAACCAT
CCGCACAGTTCCTGTGGAATTCGTACAAGGAGCTCGATCGCAACTTCCGC
AAGAATCTGAAGACGTTGTATGTGGTTCATCCGACGTGGTTCATACGGGT
CATTTGGAACTTCTTTAGCCCGTTCATTAGCGACAAGTTCCGCAAGAAGC
TAGTCTACATCTCCAGCTTGGACGAGTTGCGCCAGGCGCTCGGCCTGAAC
AAGCTGAAGTTGCCGGACAACATCTGCGACCTGGACGACAAACTGAACCC
CAGCCGGAAGCCATCGACACCGCCGCCCAGCAGCAATATAAATGCATCCC
GGCAGCAGCAGCACAAAATGGCGACGACGCATCAATTTGGTGTGCCCCTG
AAATTCATTGTGATGAACA

BS03978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6811-PA 1431 RhoGAP68F-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP68F-RD 2262 CG6811-RD 279..1132 16..869 4270 100 Plus
RhoGAP68F-RA 2196 CG6811-RA 213..1066 16..869 4270 100 Plus
RhoGAP68F-RE 2193 CG6811-RE 213..1063 16..869 4215 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12141792..12142250 411..869 2295 100 Plus
3L 28110227 3L 12141532..12141730 214..412 995 100 Plus
3L 28110227 3L 12141250..12141377 52..179 640 100 Plus
3L 28110227 3L 12140091..12140130 16..55 200 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:58:57 has no hits.

BS03978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:06 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6811-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:10 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6811-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:11 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 207..1065 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:23 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 207..1065 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:23 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12141252..12141377 54..179 100 -> Plus
3L 12141441..12141476 180..215 100 -> Plus
3L 12141534..12141729 216..411 100 -> Plus
3L 12140085..12140128 9..53 93 -> Plus
3L 12141793..12142249 412..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:11 Download gff for BS03978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12133185..12133228 9..53 93 -> Plus
arm_3L 12134352..12134477 54..179 100 -> Plus
arm_3L 12134541..12134576 180..215 100 -> Plus
arm_3L 12134634..12134829 216..411 100 -> Plus
arm_3L 12134893..12135349 412..868 100   Plus

BS03978.complete Sequence

1463 bp (1463 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634823

> BS03978.complete
GAAGTTATCAGTCGACATGGACGCCCATTCGCGTTTCGCGCCGAGATTAC
CAGGTCCCGCCATCAATCCGATCGTCGATAACTCGGATGAGCCCCAACCC
AGTCTCTCCGATCTGCACGACTTCGAGCCGAAGCTAGAGTTTGATGATAC
CGAGCTGCTGGCCCCATCTCCGCTTGAAAAAGATGTTATGGTCGGTGATT
TCGTTCTGGCCGAAGATCCAGAACTTGAGCCCGAGGAAGATGTAAATCCG
CTGGAGGACGACTTCGAGGACCAACTCAGGGAGCAGTCTGAAAACTTTCA
GACTCCCAGAAACAAATGCGATTTCCTGGGAACCGATAAGCAGGGTCGCC
ACATCTTTGGCATTTATGCATCCCGCTTTCCCGAAAAATCCCAACTGGAA
GGATTTGTGCGGGAAATCATCAAGGAGATCGAACCTTTTGTGGAGAACGA
CTACATTTTGGTTTACTTCCATCAAGGCCTCAAGGAGGACAACAAACCAT
CCGCACAGTTCCTGTGGAATTCGTACAAGGAGCTCGATCGCAACTTCCGC
AAGAATCTGAAGACGTTGTATGTGGTTCATCCGACGTGGTTCATACGGGT
CATTTGGAACTTCTTTAGCCCGTTCATTAGCGACAAGTTCCGCAAGAAGC
TAGTCTACATCTCCAGCTTGGACGAGTTGCGCCAGGCGCTCGGCCTGAAC
AAGCTGAAGTTGCCGGACAACATCTGCGACCTGGACGACAAACTGAACCC
CAGCCGGAAGCCATCGACACCGCCGCCCAGCAGCAATATAAATGCATCCC
GGCAGCAGCAGCACAAAATGGCGACGACGCATCAATTTGGTGTGCCCCTG
AAATTCATTGTGATGAACAGTCCGTGCTTAAACTCCATTCCGCCAATTGT
GCGCAAGTGCGTGGACTCGCTGTCCATAACGGGCGTGATCGATACGGAGG
GCATATTCCGTCGATCGGGCAATCACTCGGAGATCATGGCGCTCAAGGAG
CGCGTCAACCGCGGCGAGGATGTGGATCTGAAGAGCGTTAATGTCCACGT
GATAGCCGGCCTGCTGAAGAGTTTCCTGCGCGATCTCGCCGAGCCGCTGC
TCACCTTCGAGCTGTACGAGGATGTGACCGGTTTTCTAGACTGGCCCAAG
GAAGAGCGTTCGAGGAACGTGACGCAACTGATACGCGAAAAACTGCCAGA
GGAGAACTATGAACTGTTCAAGTACATTGTTGAGTTCCTGGTCAGGGTGA
TGGACTGCGAGGATCTGAACAAGATGACCTCCTCCAACCTGGCCATCGTG
TTCGGTCCGAATTTCCTGTGGTCGCGCAGCACCAGTACCTCCCTGGAGGA
GATCGCTCCCATCAATGCTTTCGTCGACTTTGTGCTGCAGAATCACAAGG
ACATCTACTTGATCGACGTCAATCAGCGCACAGTGTCCGTGGACTAAAAG
CTTTCTAGACCAT

BS03978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP68F-RD 1431 CG6811-PD 1..1431 17..1447 7155 100 Plus
RhoGAP68F-RA 1431 CG6811-PA 1..1431 17..1447 7155 100 Plus
RhoGAP68F-RE 1428 CG6811-PE 1..1428 17..1447 7075 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP68F-RD 2262 CG6811-RD 279..1710 16..1447 7160 100 Plus
RhoGAP68F-RA 2196 CG6811-RA 213..1644 16..1447 7160 100 Plus
RhoGAP68F-RE 2193 CG6811-RE 213..1641 16..1447 7080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12141792..12142828 411..1447 5185 100 Plus
3L 28110227 3L 12141532..12141730 214..412 995 100 Plus
3L 28110227 3L 12141250..12141377 52..179 640 100 Plus
3L 28110227 3L 12140091..12140130 16..55 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:43:14 has no hits.

BS03978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:08 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 1..1431 17..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:48 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 202..1644 9..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:13 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 214..1642 17..1445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:08 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 202..1644 9..1452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:49 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP68F-RA 214..1642 17..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:49 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12140092..12140128 17..53 100 -> Plus
3L 12141252..12141377 54..179 100 -> Plus
3L 12141441..12141476 180..215 100 -> Plus
3L 12141534..12141729 216..411 100 -> Plus
3L 12141793..12142826 412..1445 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:13 Download gff for BS03978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12133192..12133228 17..53 100 -> Plus
arm_3L 12134352..12134477 54..179 100 -> Plus
arm_3L 12134541..12134576 180..215 100 -> Plus
arm_3L 12134634..12134829 216..411 100 -> Plus
arm_3L 12134893..12135926 412..1445 100   Plus

BS03978.pep Sequence

Translation from 16 to 1446

> BS03978.pep
MDAHSRFAPRLPGPAINPIVDNSDEPQPSLSDLHDFEPKLEFDDTELLAP
SPLEKDVMVGDFVLAEDPELEPEEDVNPLEDDFEDQLREQSENFQTPRNK
CDFLGTDKQGRHIFGIYASRFPEKSQLEGFVREIIKEIEPFVENDYILVY
FHQGLKEDNKPSAQFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFF
SPFISDKFRKKLVYISSLDELRQALGLNKLKLPDNICDLDDKLNPSRKPS
TPPPSSNINASRQQQHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVD
SLSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDLKSVNVHVIAGLL
KSFLRDLAEPLLTFELYEDVTGFLDWPKEERSRNVTQLIREKLPEENYEL
FKYIVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLWSRSTSTSLEEIAPIN
AFVDFVLQNHKDIYLIDVNQRTVSVD*

BS03978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP68F-PD 476 CG6811-PD 1..476 1..476 2496 100 Plus
RhoGAP68F-PA 476 CG6811-PA 1..476 1..476 2496 100 Plus
RhoGAP68F-PE 475 CG6811-PE 1..475 1..476 2474 99.6 Plus
RhoGAP68F-PC 419 CG6811-PC 1..419 58..476 2193 100 Plus
RhoGAP5A-PA 494 CG3208-PA 302..484 274..453 229 35.7 Plus