Clone BS03994 Report

Search the DGRC for BS03994

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:39
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptWwox-RA
Protein status:BS03994.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03994.3prime Sequence

913 bp (842 high quality bases) assembled on 2005-12-02

> BS03994.3prime
ATGGTCTAGAAAGCTTCTAATGCTGCTCCTGCTCCACAAGCTCGGCAATC
AGGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGA
CAACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACA
ATCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCT
TGTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTA
GAACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCA
GGCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGG
GCGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCA
GTATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGG
GCAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTT
TTGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAG
GTGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGG
GCAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACA
CTCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAA
GTCGAGAGCGGCGAATCGACAGCGGGAACGTGCTGCAGGTCGCTCCTGGG
CAATCCTTTCGATGGCCGCCTCTGCGGAGGATCTGTTCCGGCAGGCGAAG
ATGATCTCACAGCCGTGATGGGCGAGCGAACGAGCCGTCTCGTAGCAATG
GCACAATTTGCGCCCGTTATCAGCGCGGTGCGTCCATGCAAATCCTTGCC
GTGCAGCACCTGC

BS03994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 401..1230 846..17 4150 100 Minus
CG7221-PA 1230 CG7221-RA 333..400 913..846 315 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 431..1328 913..17 4450 99.8 Minus
Wwox-RA 1502 CG7221-RA 431..1328 913..17 4450 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8003794 645..913 1285 99.3 Plus
2L 23513712 2L 7999844..8000033 17..206 950 100 Plus
2L 23513712 2L 8003284..8003465 465..646 910 100 Plus
2L 23513712 2L 8000304..8000436 335..467 665 100 Plus
2L 23513712 2L 8000108..8000239 206..337 660 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:26:12 has no hits.

BS03994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:27 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 333..1230 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:39 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 333..1230 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:58 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 431..1328 17..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:03 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 431..1328 17..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:03 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8003284..8003463 465..644 100 <- Plus
2L 7999844..8000032 17..205 100 <- Plus
2L 8000108..8000236 206..334 100 <- Plus
2L 8000304..8000433 335..464 100 <- Plus
2L 8003525..8003794 645..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:58 Download gff for BS03994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7999844..8000032 17..205 100 <- Plus
arm_2L 8000108..8000236 206..334 100 <- Plus
arm_2L 8000304..8000433 335..464 100 <- Plus
arm_2L 8003284..8003463 465..644 100 <- Plus
arm_2L 8003525..8003794 645..913 99   Plus

BS03994.5prime Sequence

929 bp (847 high quality bases) assembled on 2005-11-29

> BS03994.5prime
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCCGGAGAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGGTCGCCCAGGAGCTCGCCCAGC

BS03994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 1..836 17..852 4180 100 Plus
CG7221-PA 1230 CG7221-RA 842..913 858..929 335 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 94..1011 12..929 4515 99.6 Plus
Wwox-RA 1502 CG7221-RA 94..1011 12..929 4515 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8004034 618..109 2550 100 Minus
2L 23513712 2L 8003284..8003465 798..617 910 100 Minus
2L 23513712 2L 8000304..8000436 928..796 590 96.2 Minus
2L 23513712 2L 8004097..8004193 108..12 470 99 Minus
Blast to na_te.dros performed on 2015-02-10 03:34:01 has no hits.

BS03994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:28 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:41 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:21 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 94..1011 12..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:25 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 94..1011 12..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:25 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8000303..8000433 799..929 96 <- Minus
2L 8003284..8003463 619..798 100 <- Minus
2L 8003525..8004034 109..618 100 <- Minus
2L 8004097..8004193 12..108 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:21 Download gff for BS03994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8000303..8000433 799..929 96 <- Minus
arm_2L 8003284..8003463 619..798 100 <- Minus
arm_2L 8003525..8004034 109..618 100 <- Minus
arm_2L 8004097..8004193 12..108 98   Minus

BS03994.complete Sequence

1262 bp (1262 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634824

> BS03994.complete
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGTTCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGAGGCATTT
CTGTTTTTAGCCTGCATCCGGGCAATATGGTGTCCAGCGATTTGTCACGA
AACTATTGGTTCTACCGCCTGCTCTTTGCCATTGTGCGTCCCTTCACCAA
GTCGCTGCAACAAGCGGCTGCCACGAGTATCTACTGTGCGACGGCCAACG
AGCTGACCGGATTGTCTGGACTGTACTTCAACAATTGCTTCTTCTGCGAG
CCCAGCAAGTTGTCCAAAAGTGCTGCACTGCAGCAGCAACTGTGGAAGCT
GAGCGAGAACCTGATTGCCGAGCTTGTGGAGCAGGAGCAGCATTAGAAGC
TTTCTAGACCAT

BS03994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1230 CG7221-PB 1..1230 17..1246 6150 100 Plus
Wwox-RA 1230 CG7221-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 94..1328 12..1246 6160 99.9 Plus
Wwox-RA 1502 CG7221-RA 94..1328 12..1246 6160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8004034 618..109 2550 100 Minus
2L 23513712 2L 7999844..8000033 1246..1057 950 100 Minus
2L 23513712 2L 8003284..8003465 798..617 910 100 Minus
2L 23513712 2L 8000304..8000436 928..796 665 100 Minus
2L 23513712 2L 8000108..8000239 1057..926 660 100 Minus
2L 23513712 2L 8004097..8004193 108..12 470 99 Minus
Blast to na_te.dros performed on 2014-11-27 20:22:04 has no hits.

BS03994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:49 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:29 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 75..1309 12..1246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:17 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 99..1328 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:51 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 75..1309 12..1246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:09 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 99..1328 17..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:09 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004097..8004188 17..108 100   Minus
2L 7999844..8000032 1058..1246 100 <- Minus
2L 8000108..8000236 929..1057 100 <- Minus
2L 8000304..8000433 799..928 100 <- Minus
2L 8003284..8003463 619..798 100 <- Minus
2L 8003525..8004034 109..618 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:17 Download gff for BS03994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8000304..8000433 799..928 100 <- Minus
arm_2L 7999844..8000032 1058..1246 100 <- Minus
arm_2L 8000108..8000236 929..1057 100 <- Minus
arm_2L 8003284..8003463 619..798 100 <- Minus
arm_2L 8003525..8004034 109..618 100 <- Minus
arm_2L 8004097..8004188 17..108 100   Minus

BS03994.pep Sequence

Translation from 16 to 1245

> BS03994.pep
MIALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRI
TGELPLGWEKYYDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQV
RQRFDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIF
ACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSV
SHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLFDYKT
RIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVLFAQ
ELAQRWKQRGISVFSLHPGNMVSSDLSRNYWFYRLLFAIVRPFTKSLQQA
AATSIYCATANELTGLSGLYFNNCFFCEPSKLSKSAALQQQLWKLSENLI
AELVEQEQH*

BS03994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-PB 409 CG7221-PB 1..409 1..409 2146 100 Plus
Wwox-PA 409 CG7221-PA 1..409 1..409 2146 100 Plus
CG2064-PA 330 CG2064-PA 40..318 118..397 391 37.1 Plus
CG2070-PB 325 CG2070-PB 43..318 121..397 377 36.4 Plus
CG2070-PA 325 CG2070-PA 43..318 121..397 377 36.4 Plus