Clone Sequence Records
BS03994.3prime Sequence
913 bp (842 high quality bases) assembled on 2005-12-02
> BS03994.3prime
ATGGTCTAGAAAGCTTCTAATGCTGCTCCTGCTCCACAAGCTCGGCAATC
AGGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGA
CAACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACA
ATCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCT
TGTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTA
GAACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCA
GGCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGG
GCGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCA
GTATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGG
GCAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTT
TTGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAG
GTGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGG
GCAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACA
CTCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAA
GTCGAGAGCGGCGAATCGACAGCGGGAACGTGCTGCAGGTCGCTCCTGGG
CAATCCTTTCGATGGCCGCCTCTGCGGAGGATCTGTTCCGGCAGGCGAAG
ATGATCTCACAGCCGTGATGGGCGAGCGAACGAGCCGTCTCGTAGCAATG
GCACAATTTGCGCCCGTTATCAGCGCGGTGCGTCCATGCAAATCCTTGCC
GTGCAGCACCTGC
BS03994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 401..1230 | 846..17 | 4150 | 100 | Minus |
CG7221-PA | 1230 | CG7221-RA | 333..400 | 913..846 | 315 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 431..1328 | 913..17 | 4450 | 99.8 | Minus |
Wwox-RA | 1502 | CG7221-RA | 431..1328 | 913..17 | 4450 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8003794 | 645..913 | 1285 | 99.3 | Plus |
2L | 23513712 | 2L | 7999844..8000033 | 17..206 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8003284..8003465 | 465..646 | 910 | 100 | Plus |
2L | 23513712 | 2L | 8000304..8000436 | 335..467 | 665 | 100 | Plus |
2L | 23513712 | 2L | 8000108..8000239 | 206..337 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:26:12 has no hits.
BS03994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:27 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 333..1230 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:39 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 333..1230 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:58 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 431..1328 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:03 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 431..1328 | 17..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:03 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8003284..8003463 | 465..644 | 100 | <- | Plus |
2L | 7999844..8000032 | 17..205 | 100 | <- | Plus |
2L | 8000108..8000236 | 206..334 | 100 | <- | Plus |
2L | 8000304..8000433 | 335..464 | 100 | <- | Plus |
2L | 8003525..8003794 | 645..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:58 Download gff for
BS03994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7999844..8000032 | 17..205 | 100 | <- | Plus |
arm_2L | 8000108..8000236 | 206..334 | 100 | <- | Plus |
arm_2L | 8000304..8000433 | 335..464 | 100 | <- | Plus |
arm_2L | 8003284..8003463 | 465..644 | 100 | <- | Plus |
arm_2L | 8003525..8003794 | 645..913 | 99 | | Plus |
BS03994.5prime Sequence
929 bp (847 high quality bases) assembled on 2005-11-29
> BS03994.5prime
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCCGGAGAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGGTCGCCCAGGAGCTCGCCCAGC
BS03994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
CG7221-PA | 1230 | CG7221-RA | 842..913 | 858..929 | 335 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 94..1011 | 12..929 | 4515 | 99.6 | Plus |
Wwox-RA | 1502 | CG7221-RA | 94..1011 | 12..929 | 4515 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8004034 | 618..109 | 2550 | 100 | Minus |
2L | 23513712 | 2L | 8003284..8003465 | 798..617 | 910 | 100 | Minus |
2L | 23513712 | 2L | 8000304..8000436 | 928..796 | 590 | 96.2 | Minus |
2L | 23513712 | 2L | 8004097..8004193 | 108..12 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:34:01 has no hits.
BS03994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:28 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:41 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:21 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 94..1011 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:25 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 94..1011 | 12..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:25 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8000303..8000433 | 799..929 | 96 | <- | Minus |
2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
2L | 8004097..8004193 | 12..108 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:21 Download gff for
BS03994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8000303..8000433 | 799..929 | 96 | <- | Minus |
arm_2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
arm_2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
arm_2L | 8004097..8004193 | 12..108 | 98 | | Minus |
BS03994.complete Sequence
1262 bp (1262 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634824
> BS03994.complete
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGTTCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGAGGCATTT
CTGTTTTTAGCCTGCATCCGGGCAATATGGTGTCCAGCGATTTGTCACGA
AACTATTGGTTCTACCGCCTGCTCTTTGCCATTGTGCGTCCCTTCACCAA
GTCGCTGCAACAAGCGGCTGCCACGAGTATCTACTGTGCGACGGCCAACG
AGCTGACCGGATTGTCTGGACTGTACTTCAACAATTGCTTCTTCTGCGAG
CCCAGCAAGTTGTCCAAAAGTGCTGCACTGCAGCAGCAACTGTGGAAGCT
GAGCGAGAACCTGATTGCCGAGCTTGTGGAGCAGGAGCAGCATTAGAAGC
TTTCTAGACCAT
BS03994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1230 | CG7221-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Wwox-RA | 1230 | CG7221-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 94..1328 | 12..1246 | 6160 | 99.9 | Plus |
Wwox-RA | 1502 | CG7221-RA | 94..1328 | 12..1246 | 6160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8004034 | 618..109 | 2550 | 100 | Minus |
2L | 23513712 | 2L | 7999844..8000033 | 1246..1057 | 950 | 100 | Minus |
2L | 23513712 | 2L | 8003284..8003465 | 798..617 | 910 | 100 | Minus |
2L | 23513712 | 2L | 8000304..8000436 | 928..796 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8000108..8000239 | 1057..926 | 660 | 100 | Minus |
2L | 23513712 | 2L | 8004097..8004193 | 108..12 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:04 has no hits.
BS03994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:49 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:29 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 75..1309 | 12..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:17 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 99..1328 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:51 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 75..1309 | 12..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:09 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 99..1328 | 17..1246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:09 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8004097..8004188 | 17..108 | 100 | | Minus |
2L | 7999844..8000032 | 1058..1246 | 100 | <- | Minus |
2L | 8000108..8000236 | 929..1057 | 100 | <- | Minus |
2L | 8000304..8000433 | 799..928 | 100 | <- | Minus |
2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:17 Download gff for
BS03994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8000304..8000433 | 799..928 | 100 | <- | Minus |
arm_2L | 7999844..8000032 | 1058..1246 | 100 | <- | Minus |
arm_2L | 8000108..8000236 | 929..1057 | 100 | <- | Minus |
arm_2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
arm_2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
arm_2L | 8004097..8004188 | 17..108 | 100 | | Minus |
BS03994.pep Sequence
Translation from 16 to 1245
> BS03994.pep
MIALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRI
TGELPLGWEKYYDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQV
RQRFDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIF
ACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSV
SHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLFDYKT
RIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVLFAQ
ELAQRWKQRGISVFSLHPGNMVSSDLSRNYWFYRLLFAIVRPFTKSLQQA
AATSIYCATANELTGLSGLYFNNCFFCEPSKLSKSAALQQQLWKLSENLI
AELVEQEQH*
BS03994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-PB | 409 | CG7221-PB | 1..409 | 1..409 | 2146 | 100 | Plus |
Wwox-PA | 409 | CG7221-PA | 1..409 | 1..409 | 2146 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 40..318 | 118..397 | 391 | 37.1 | Plus |
CG2070-PB | 325 | CG2070-PB | 43..318 | 121..397 | 377 | 36.4 | Plus |
CG2070-PA | 325 | CG2070-PA | 43..318 | 121..397 | 377 | 36.4 | Plus |