Clone Sequence Records
BS04002.3prime Sequence
830 bp (724 high quality bases) assembled on 2005-12-01
> BS04002.3prime
ATGGTCTAGAAAGCTTTTATGATTCGGGGCCTTGATCCCAGCGTTCCTCC
TCTTGTTCCTGGTCGACCAAAGCATCATCCTGGGAGGAACGATCAGAAAA
CTTGTAAGGATCAGACCATTCCGATTCCTGATCGGAACTAACTATTAAAA
CACACTCGTTCTCTACTGTTAGGTTATTTTCCAGTAGAAGTTCCTCGATA
CGTTCTTTGGTGGCACCCACGTGTTCTAGGCGATCCAATAAGAAAGCAAT
AGGCATATTACAAGTGTCCTGATAAGTACCCTCCTCAATCTCGGAGGATT
CGAATTGTCTTTTGAAACGCTGAAGCTCTATTTGCACTTCGGTCCAGAGC
TTTTCCTTCTCGGTGCGCGTATCCACATAAAAAGGATATTCCACGGTATG
AATTAGCTTGTAGGGAATTGATTCCTTATCGATATTGGGTTTGCTAACCA
ACGGGTTAACCAACTGCATCTCCAGCATATCCTTGCGAACGAATATGGCT
ATCTGTGAAACGGGGCCCACCGACTCGTATTCCTTAGGCGGATTACCCAC
TCCCGTTAGGGAAAACATATAATTCGGGTACTTCTCCACAATGCCCAAAC
ACCAGTTCTTGAACTCATCGCGTGACCACTCGAACTTGTGATCCTCGTGG
CGAAAACCATTTGGCAACAGCGGATTGAACCGCGTAAATATAACGTTGAA
GTCCGAGTTTGGTGTGCTGAAGACTACCAATTTCGGCTGCATGAAACCAA
AAATGTTGACTGGAATTTTGGCCAATTACATCGTCGTAAACGTGCTCGAT
TAGTTTCAATTGCGATTACAGCGTCAGTGT
BS04002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12367-PA | 1176 | CG12367-RA | 417..1176 | 776..17 | 3800 | 100 | Minus |
| CG12367-PA | 1176 | CG12367-RA | 389..417 | 805..777 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1573 | CG12367-RA | 415..1226 | 830..17 | 4020 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12151622..12152405 | 801..17 | 3875 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:32:27 has no hits.
BS04002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:30 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-PA | 365..1176 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:43 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-PA | 365..1176 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:51 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 415..1226 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:49 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 415..1226 | 17..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:49 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12151505..12151532 | 802..830 | 96 | -> | Minus |
| 2R | 12151622..12152405 | 17..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:51 Download gff for
BS04002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8039010..8039037 | 802..830 | 96 | -> | Minus |
| arm_2R | 8039127..8039910 | 17..801 | 99 | | Minus |
BS04002.5prime Sequence
672 bp (661 high quality bases) assembled on 2005-09-08
> BS04002.5prime
CAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGACCAAAATG
ACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAGCGATATTG
CGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCAGATTAAGA
AGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGCTAATGCGT
CGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGACAAGTCCTT
GCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGATTATATAC
GGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGAATGTGGCT
GATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCAATTGAACT
AATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGTCAACATTT
TTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAAACTCGGAC
TTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAATGGTTTTCG
CCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAAGAACTGGT
GTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCCTAACGGGA
GTGGGTAATCCGCCTAAGGAAT
BS04002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12367-PA | 1176 | CG12367-RA | 1..664 | 9..672 | 3320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1573 | CG12367-RA | 51..714 | 9..672 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12151622..12151893 | 401..672 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 12145760..12145983 | 9..232 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 12151362..12151532 | 230..400 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:24:53 has no hits.
BS04002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:31 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-PA | 1..664 | 9..672 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:44 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-PA | 1..664 | 9..672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:59 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 45..714 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:07 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 45..714 | 1..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:07 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12145754..12145981 | 1..230 | 98 | -> | Plus |
| 2R | 12151363..12151532 | 231..400 | 100 | -> | Plus |
| 2R | 12151622..12151893 | 401..672 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:59 Download gff for
BS04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8033259..8033486 | 1..230 | 98 | -> | Plus |
| arm_2R | 8038868..8039037 | 231..400 | 100 | -> | Plus |
| arm_2R | 8039127..8039398 | 401..672 | 100 | | Plus |
BS04002.complete Sequence
1208 bp assembled on 2007-10-17
GenBank Submission: FJ634825
> BS04002.complete
GAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGA
CCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAG
CGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCA
GATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGC
TAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGAC
AAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGA
TTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGA
ATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCA
ATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGT
CAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAA
ACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAAT
GGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAA
GAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCC
TAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTT
TCACAGATAGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGT
TAACCCGTTGGTTAGCAAACCCAATATCGATAAGGAATCAATTCCCTACA
AGCTAATTCATACCGTGGAATATCCTTTTTATGTGGATACGCGCACCGAG
AAGGAAAAGCTCTGGACCGAAGTGCAAATAGAGCTTCAGCGTTTCAAAAG
ACAATTCGAATCCTCCGAGATTGAGGAGGGTACTTATCAGGACACTTGTA
ATATGCCTATTGCTTTCTTATTGGATCGCCTAGAACACGTGGGTGCCACC
AAAGAACGTATCGAGGAACTTCTACTGGAAAATAACCTAACAGTAGAGAA
CGAGTGTGTTTTAATAGTTAGTTCCGATCAGGAATCGGAATGGTCTGATC
CTTACAAGTTTTCTGATCGTTCCTCCCAGGATGATGCTTTGGTCGACCAG
GAACAAGAGGAGGAACGCTGGGATCAAGGCCCCGAATCATAAAAGCTTTC
TAGACCAT
BS04002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1176 | CG12367-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1573 | CG12367-RA | 51..1226 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12151622..12152405 | 409..1192 | 3920 | 100 | Plus |
| 2R | 25286936 | 2R | 12145760..12145983 | 17..240 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 12151362..12151532 | 238..408 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:51:25 has no hits.
BS04002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:31 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-RA | 1..1176 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:18 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pimet-RA | 35..1210 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:19 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 58..1224 | 24..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:18 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-RA | 42..1208 | 24..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:34 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 58..1224 | 24..1190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:34 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12145767..12145981 | 24..238 | 100 | -> | Plus |
| 2R | 12151363..12151532 | 239..408 | 100 | -> | Plus |
| 2R | 12151622..12152403 | 409..1190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:19 Download gff for
BS04002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8038868..8039037 | 239..408 | 100 | -> | Plus |
| arm_2R | 8033272..8033486 | 24..238 | 100 | -> | Plus |
| arm_2R | 8039127..8039908 | 409..1190 | 100 | | Plus |
BS04002.pep Sequence
Translation from 16 to 1191
> BS04002.pep
MFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILEDARWKDQIKKVV
EFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSVNPLVSDYIRSR
ASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDVLAKIPVNIFGF
MQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEWSRDEFKNWCLG
IVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDMLEMQLVNPLVS
KPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIELQRFKRQFESS
EIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLENNLTVENECVLI
VSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGPES*
BS04002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-PA | 391 | CG12367-PA | 1..391 | 1..391 | 2049 | 100 | Plus |
