Clone Sequence Records
BS04003.5prime Sequence
597 bp (596 high quality bases) assembled on 2005-11-29
> BS04003.5prime
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCTGAAAGCTTTCTAGACC
BS04003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PA | 567 | CG14502-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
CG14502-PB | 567 | CG14502-RB | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..596 | 17..583 | 2835 | 100 | Plus |
CG14502-RC | 1269 | CG14502-RC | 588..1154 | 17..583 | 2835 | 100 | Plus |
CG14502-RB | 2224 | CG14502-RB | 1543..2109 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294597 | 244..583 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 18294010..18294166 | 90..246 | 785 | 100 | Plus |
2R | 25286936 | 2R | 18293875..18293949 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:13:47 has no hits.
BS04003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:33 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:48 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:27 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2113 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:58 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2113 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:58 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293875..18293949 | 17..91 | 100 | -> | Plus |
2R | 18294012..18294164 | 92..244 | 100 | -> | Plus |
2R | 18294259..18294601 | 245..591 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:27 Download gff for
BS04003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181517..14181669 | 92..244 | 100 | -> | Plus |
arm_2R | 14181380..14181454 | 17..91 | 100 | -> | Plus |
arm_2R | 14181764..14182106 | 245..591 | 98 | | Plus |
BS04003.3prime Sequence
589 bp (588 high quality bases) assembled on 2005-09-08
> BS04003.3prime
ATGGTCTAGAAAGCTTTCAGACAAGTTTTGTGGTTATCTTCACAATCAGA
ATGAATCCCCAATCCACGGGATTCGTCAAGGTGAAATTGACCTTGTAGTA
GCCCTCGGGAACCATATCCGGAAAACCATCACTGTTTGCCACACACTTTT
CCAACACGTACGTATCCTGGGGCCACGGTGGCTCGAATTTGCCATCAAAC
TTGATGAGATTGGAACAATCGCCCAGATTTGGTAGCACTACGTTCTTATA
GTGGCTGTTCATGAACTCAACATATGGCTGTTTCGGGATGCTAAACGGCA
TAATCTTGTAGTCATTTTCGTCCCCGGAGGTGCTTCGATAGGCCATTGCT
TCAACCATGGTATTATCTTCTGGTGTGTACTTAAATTCAATGTTGCCAGA
AAGGGCATATTCTCCCCTACCGACTCGCTCCACTTTGGCCGCAATCTTCA
GCTTAGTCTCATCCGTGGTATAGGTTTCAATGGACAGCGGTTCGTAGTCC
CACTTGCGCTTGCCATTGCATTGATCAACTATCAAAAGTATTAATACTCC
TCCAATGATGGGCAGTAGCAAACGTGGTAGCATGTCGAC
BS04003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PA | 567 | CG14502-RA | 1..567 | 583..17 | 2835 | 100 | Minus |
CG14502-PB | 567 | CG14502-RB | 1..567 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..596 | 583..17 | 2835 | 100 | Minus |
CG14502-RC | 1269 | CG14502-RC | 588..1154 | 583..17 | 2835 | 100 | Minus |
CG14502-RB | 2224 | CG14502-RB | 1543..2109 | 583..17 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294597 | 356..17 | 1700 | 100 | Minus |
2R | 25286936 | 2R | 18294010..18294166 | 510..354 | 785 | 100 | Minus |
2R | 25286936 | 2R | 18293875..18293949 | 583..509 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:51:03 has no hits.
BS04003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:32 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:46 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 05:08:13 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1537..2113 | 9..589 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:39 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1537..2113 | 9..589 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:39 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293869..18293949 | 509..589 | 95 | -> | Minus |
2R | 18294012..18294164 | 356..508 | 100 | -> | Minus |
2R | 18294259..18294601 | 9..355 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 05:08:13 Download gff for
BS04003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181374..14181454 | 509..589 | 95 | -> | Minus |
arm_2R | 14181517..14181669 | 356..508 | 100 | -> | Minus |
arm_2R | 14181764..14182106 | 9..355 | 98 | | Minus |
BS04003.complete Sequence
599 bp (599 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634826
> BS04003.complete
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCTGAAAGCTTTCTAGACCAT
BS04003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 567 | CG14502-PD | 1..567 | 17..583 | 2835 | 100 | Plus |
CG14502-RC | 567 | CG14502-PC | 1..567 | 17..583 | 2835 | 100 | Plus |
CG14502-RB | 567 | CG14502-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..596 | 17..583 | 2835 | 100 | Plus |
CG14502-RC | 1269 | CG14502-RC | 588..1154 | 17..583 | 2835 | 100 | Plus |
CG14502-RB | 2224 | CG14502-RB | 1543..2109 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294597 | 244..583 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 18294010..18294166 | 90..246 | 785 | 100 | Plus |
2R | 25286936 | 2R | 18293875..18293949 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:42:38 has no hits.
BS04003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:25 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:29 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2113 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:00 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2108 | 17..582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:25 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2113 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:18 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2108 | 17..582 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:18 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293875..18293949 | 17..91 | 100 | -> | Plus |
2R | 18294012..18294164 | 92..244 | 100 | -> | Plus |
2R | 18294259..18294596 | 245..582 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:00 Download gff for
BS04003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181380..14181454 | 17..91 | 100 | -> | Plus |
arm_2R | 14181517..14181669 | 92..244 | 100 | -> | Plus |
arm_2R | 14181764..14182101 | 245..582 | 100 | | Plus |
BS04003.pep Sequence
Translation from 16 to 582
> BS04003.pep
MLPRLLLPIIGGVLILLIVDQCNGKRKWDYEPLSIETYTTDETKLKIAAK
VERVGRGEYALSGNIEFKYTPEDNTMVEAMAYRSTSGDENDYKIMPFSIP
KQPYVEFMNSHYKNVVLPNLGDCSNLIKFDGKFEPPWPQDTYVLEKCVAN
SDGFPDMVPEGYYKVNFTLTNPVDWGFILIVKITTKLV*
BS04003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PD | 188 | CG14502-PD | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PC | 188 | CG14502-PC | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PB | 188 | CG14502-PB | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PA | 188 | CG14502-PA | 1..188 | 1..188 | 1007 | 100 | Plus |
CG18539-PB | 185 | CG18539-PB | 10..185 | 13..188 | 543 | 49.4 | Plus |