Clone BS04003 Report

Search the DGRC for BS04003

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG14502-RA
Protein status:BS04003.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04003.5prime Sequence

597 bp (596 high quality bases) assembled on 2005-11-29

> BS04003.5prime
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCTGAAAGCTTTCTAGACC

BS04003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PA 567 CG14502-RA 1..567 17..583 2835 100 Plus
CG14502-PB 567 CG14502-RB 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..596 17..583 2835 100 Plus
CG14502-RC 1269 CG14502-RC 588..1154 17..583 2835 100 Plus
CG14502-RB 2224 CG14502-RB 1543..2109 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294597 244..583 1700 100 Plus
2R 25286936 2R 18294010..18294166 90..246 785 100 Plus
2R 25286936 2R 18293875..18293949 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:13:47 has no hits.

BS04003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:33 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:48 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:27 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2113 17..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:58 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2113 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:58 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18293875..18293949 17..91 100 -> Plus
2R 18294012..18294164 92..244 100 -> Plus
2R 18294259..18294601 245..591 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:27 Download gff for BS04003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181517..14181669 92..244 100 -> Plus
arm_2R 14181380..14181454 17..91 100 -> Plus
arm_2R 14181764..14182106 245..591 98   Plus

BS04003.3prime Sequence

589 bp (588 high quality bases) assembled on 2005-09-08

> BS04003.3prime
ATGGTCTAGAAAGCTTTCAGACAAGTTTTGTGGTTATCTTCACAATCAGA
ATGAATCCCCAATCCACGGGATTCGTCAAGGTGAAATTGACCTTGTAGTA
GCCCTCGGGAACCATATCCGGAAAACCATCACTGTTTGCCACACACTTTT
CCAACACGTACGTATCCTGGGGCCACGGTGGCTCGAATTTGCCATCAAAC
TTGATGAGATTGGAACAATCGCCCAGATTTGGTAGCACTACGTTCTTATA
GTGGCTGTTCATGAACTCAACATATGGCTGTTTCGGGATGCTAAACGGCA
TAATCTTGTAGTCATTTTCGTCCCCGGAGGTGCTTCGATAGGCCATTGCT
TCAACCATGGTATTATCTTCTGGTGTGTACTTAAATTCAATGTTGCCAGA
AAGGGCATATTCTCCCCTACCGACTCGCTCCACTTTGGCCGCAATCTTCA
GCTTAGTCTCATCCGTGGTATAGGTTTCAATGGACAGCGGTTCGTAGTCC
CACTTGCGCTTGCCATTGCATTGATCAACTATCAAAAGTATTAATACTCC
TCCAATGATGGGCAGTAGCAAACGTGGTAGCATGTCGAC

BS04003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PA 567 CG14502-RA 1..567 583..17 2835 100 Minus
CG14502-PB 567 CG14502-RB 1..567 583..17 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..596 583..17 2835 100 Minus
CG14502-RC 1269 CG14502-RC 588..1154 583..17 2835 100 Minus
CG14502-RB 2224 CG14502-RB 1543..2109 583..17 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294597 356..17 1700 100 Minus
2R 25286936 2R 18294010..18294166 510..354 785 100 Minus
2R 25286936 2R 18293875..18293949 583..509 375 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:51:03 has no hits.

BS04003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:32 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:46 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 05:08:13 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1537..2113 9..589 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:39 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1537..2113 9..589 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:39 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18293869..18293949 509..589 95 -> Minus
2R 18294012..18294164 356..508 100 -> Minus
2R 18294259..18294601 9..355 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 05:08:13 Download gff for BS04003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181374..14181454 509..589 95 -> Minus
arm_2R 14181517..14181669 356..508 100 -> Minus
arm_2R 14181764..14182106 9..355 98   Minus

BS04003.complete Sequence

599 bp (599 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634826

> BS04003.complete
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCTGAAAGCTTTCTAGACCAT

BS04003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 567 CG14502-PD 1..567 17..583 2835 100 Plus
CG14502-RC 567 CG14502-PC 1..567 17..583 2835 100 Plus
CG14502-RB 567 CG14502-PB 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..596 17..583 2835 100 Plus
CG14502-RC 1269 CG14502-RC 588..1154 17..583 2835 100 Plus
CG14502-RB 2224 CG14502-RB 1543..2109 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294597 244..583 1700 100 Plus
2R 25286936 2R 18294010..18294166 90..246 785 100 Plus
2R 25286936 2R 18293875..18293949 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:42:38 has no hits.

BS04003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:25 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:29 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2113 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:00 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2108 17..582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:25 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2113 17..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:18 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2108 17..582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:18 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18293875..18293949 17..91 100 -> Plus
2R 18294012..18294164 92..244 100 -> Plus
2R 18294259..18294596 245..582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:00 Download gff for BS04003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181380..14181454 17..91 100 -> Plus
arm_2R 14181517..14181669 92..244 100 -> Plus
arm_2R 14181764..14182101 245..582 100   Plus

BS04003.pep Sequence

Translation from 16 to 582

> BS04003.pep
MLPRLLLPIIGGVLILLIVDQCNGKRKWDYEPLSIETYTTDETKLKIAAK
VERVGRGEYALSGNIEFKYTPEDNTMVEAMAYRSTSGDENDYKIMPFSIP
KQPYVEFMNSHYKNVVLPNLGDCSNLIKFDGKFEPPWPQDTYVLEKCVAN
SDGFPDMVPEGYYKVNFTLTNPVDWGFILIVKITTKLV*

BS04003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PD 188 CG14502-PD 1..188 1..188 1007 100 Plus
CG14502-PC 188 CG14502-PC 1..188 1..188 1007 100 Plus
CG14502-PB 188 CG14502-PB 1..188 1..188 1007 100 Plus
CG14502-PA 188 CG14502-PA 1..188 1..188 1007 100 Plus
CG18539-PB 185 CG18539-PB 10..185 13..188 543 49.4 Plus