Clone Sequence Records
BS04004.3prime Sequence
901 bp (846 high quality bases) assembled on 2005-09-08
> BS04004.3prime
ATGGTCTAGAAAGCTTTCAGCAGGAACACTTGTTCTTGGCATCCGATCCG
GTTGCATCGGCCGCGCTCAAGTTGAACTTGTCGCCATCGGCCAGATCGGC
AGATATCAGCTTATCGTTGATGAGTATCTTATTCACGAGGGCACGAGCTG
CCTCATCGATGTTGATATTCTCCTTGGCGGATGTCTCAAACCAACCGGCA
AATCCGTTCTCCCTCACATACTCATCCATCTTCTCGGGCTGCGTTATGAT
GCCCTGCTTTTCCTGGTCGCATTTATTGGCCAGCAGGATGCACGGAATGG
GACTGCCGTCCGGCAGCTGCACCTTGGAGTCTAGATCTTCCTTCCACTTG
CTCACGCAATCGAAAGTCCCACTGCGAGTCACATCAAAAACGATGAACGC
GCCCACCGCCTCCTTGTAGTAGACACGGGTCATGTTGCCAAACCTCTCCT
GACCGGCGATATCCCACAGCTGGAGGCGCACTATCGTATTGGCGTCCCAC
TGCAGCACTTTCAGGGCGAAGTCCACGCCGATGGTGGCCCTGTAGTTCTG
GCTGAAGAACTGGTGCACATAGCGCTTAATGAAGGACGTCTTGCCGGTGC
CCAGTTCACCAATGACTAGAATCTTGTACAGATGCTCGCGCTTATCGCTG
GTGGATGTCATGATGGCTCCGTTGTGCAGGTATCCGTTGTTCCTGTTGAT
GTCCATGTGGTTACGGTTGACTCCCGCGGGCATGACCGTGGTCAGTTGCA
GCGCCTCTATGGCGCCGAGATCCAACTCCGGCTTGGGCTCGGCGTAGGCC
GGAGAAGCACTTCGCAGCGAGAACTGGGAGGAGCTGAGCGGCGGATGCAG
CTGGGTCTCCGCGGACGGGAAACAGATCTGGCGGCGCACGAAGATGGGCG
A
BS04004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8024-PE | 1167 | ltd-RE | 283..1167 | 901..17 | 4425 | 100 | Minus |
| CG8024-PC | 1167 | ltd-RC | 283..1167 | 901..17 | 4425 | 100 | Minus |
| CG8024-PD | 669 | ltd-RD | 18..669 | 668..17 | 3260 | 100 | Minus |
| CG8024-PA | 1158 | ltd-RA | 508..1158 | 667..17 | 3255 | 100 | Minus |
| CG8024-PB | 2061 | ltd-RB | 1411..2061 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 893..1777 | 901..17 | 4425 | 100 | Minus |
| ltd-RE | 2156 | CG8024-RE | 702..1586 | 901..17 | 4425 | 100 | Minus |
| ltd-RD | 1448 | CG8024-RD | 227..878 | 668..17 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9178830..9179225 | 272..667 | 1980 | 100 | Plus |
| 2R | 25286936 | 2R | 9185216..9185450 | 667..901 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 9178606..9178749 | 128..271 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 9178434..9178546 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:33:01 has no hits.
BS04004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:34 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-PC | 284..1167 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:49 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-PC | 284..1167 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:41:47 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 703..1589 | 12..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:54:35 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 703..1589 | 12..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:54:35 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178606..9178749 | 128..271 | 100 | <- | Plus |
| 2R | 9178431..9178544 | 12..127 | 97 | <- | Plus |
| 2R | 9178830..9179225 | 272..667 | 100 | <- | Plus |
| 2R | 9185217..9185449 | 668..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:41:47 Download gff for
BS04004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066111..5066254 | 128..271 | 100 | <- | Plus |
| arm_2R | 5065936..5066049 | 12..127 | 97 | <- | Plus |
| arm_2R | 5066335..5066730 | 272..667 | 100 | <- | Plus |
| arm_2R | 5072722..5072954 | 668..900 | 100 | | Plus |
BS04004.5prime Sequence
845 bp (790 high quality bases) assembled on 2005-12-01
> BS04004.5prime
GAAGTTATCAGTCGACATGGCAACCGGCGTCATCCAGAGTAGCGTTGTCT
CCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCC
GCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTC
GGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTC
AGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGA
CCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTC
GCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGC
TGCATCCGCCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGCTTCTCCG
GCCTACGCCGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCT
GCAACTGACCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACA
TCAACAGGAACAACGGATACCTGCACAACGGAGCCATCATGACATCCACC
AGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGG
CACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCC
AGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAG
TGGGACGCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCA
GGAGAGGTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCG
CGTTCATCGTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCG
BS04004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8024-PE | 1167 | ltd-RE | 1..829 | 17..845 | 4145 | 100 | Plus |
| CG8024-PC | 1167 | ltd-RC | 1..829 | 17..845 | 4145 | 100 | Plus |
| CG8024-PD | 669 | ltd-RD | 18..331 | 532..845 | 1570 | 100 | Plus |
| CG8024-PA | 1158 | ltd-RA | 508..820 | 533..845 | 1565 | 100 | Plus |
| CG8024-PB | 2061 | ltd-RB | 1411..1723 | 533..845 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1439 | 16..845 | 4150 | 100 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1248 | 16..845 | 4150 | 100 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..540 | 532..845 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 9178913..9179225 | 845..533 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:32:18 has no hits.
BS04004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:35 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-PC | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:51 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-PC | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:28 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1248 | 11..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:17 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1248 | 11..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:17 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178913..9179225 | 533..845 | 100 | <- | Minus |
| 2R | 9185217..9185737 | 11..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:28 Download gff for
BS04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066418..5066730 | 533..845 | 100 | <- | Minus |
| arm_2R | 5072722..5073242 | 11..532 | 99 | | Minus |
BS04004.complete Sequence
1199 bp assembled on 2007-10-17
GenBank Submission: FJ634827
> BS04004.complete
GAAGTTATCAGTCGACATGGCAACCGGCGTCATCCAGAGTAGCGTTGTCT
CCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCC
GCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTC
GGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTC
AGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGA
CCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTC
GCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGC
TGCATCCGCCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGCTTCTCCG
GCCTACGCCGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCT
GCAACTGACCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACA
TCAACAGGAACAACGGATACCTGCACAACGGAGCCATCATGACATCCACC
AGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGG
CACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCC
AGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAG
TGGGACGCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCA
GGAGAGGTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCG
CGTTCATCGTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGAGC
AAGTGGAAGGAAGATCTAGACTCCAAGGTGCAGCTGCCGGACGGCAGTCC
CATTCCGTGCATCCTGCTGGCCAATAAATGCGACCAGGAAAAGCAGGGCA
TCATAACGCAGCCCGAGAAGATGGATGAGTATGTGAGGGAGAACGGATTT
GCCGGTTGGTTTGAGACATCCGCCAAGGAGAATATCAACATCGATGAGGC
AGCTCGTGCCCTCGTGAATAAGATACTCATCAACGATAAGCTGATATCTG
CCGATCTGGCCGATGGCGACAAGTTCAACTTGAGCGCGGCCGATGCAACC
GGATCGGATGCCAAGAACAAGTGTTCCTGCTGAAAGCTTTCTAGACCAT
BS04004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 1167 | CG8024-PC | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| ltd-RE | 1167 | CG8024-PE | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| ltd-RD | 669 | CG8024-PD | 18..669 | 532..1183 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1777 | 16..1183 | 5840 | 100 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1586 | 16..1183 | 5840 | 100 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..878 | 532..1183 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 9178830..9179225 | 928..533 | 1980 | 100 | Minus |
| 2R | 25286936 | 2R | 9178606..9178749 | 1072..929 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 9178434..9178546 | 1183..1071 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:09 has no hits.
BS04004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:32 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:20 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 625..1799 | 11..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:06 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 420..1585 | 17..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:03 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 630..1795 | 17..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:29 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 420..1585 | 17..1182 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:29 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9185217..9185732 | 17..532 | 100 | | Minus |
| 2R | 9178435..9178544 | 1073..1182 | 100 | <- | Minus |
| 2R | 9178606..9178749 | 929..1072 | 100 | <- | Minus |
| 2R | 9178830..9179225 | 533..928 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:06 Download gff for
BS04004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5065940..5066049 | 1073..1182 | 100 | <- | Minus |
| arm_2R | 5066111..5066254 | 929..1072 | 100 | <- | Minus |
| arm_2R | 5066335..5066730 | 533..928 | 100 | <- | Minus |
| arm_2R | 5072722..5073237 | 17..532 | 100 | | Minus |
BS04004.pep Sequence
Translation from 16 to 1182
> BS04004.pep
MATGVIQSSVVSTSAGRQNICDCLEQESAGLVKALPKSKSADQLSELTCA
CLRCQYLATDLQHPNTQSGHLPVEHRHRPVSSGSGSLGALSAKESPIFVR
RQICFPSAETQLHPPLSSSQFSLRSASPAYAEPKPELDLGAIEALQLTTV
MPAGVNRNHMDINRNNGYLHNGAIMTSTSDKREHLYKILVIGELGTGKTS
FIKRYVHQFFSQNYRATIGVDFALKVLQWDANTIVRLQLWDIAGQERFGN
MTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCIL
LANKCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALV
NKILINDKLISADLADGDKFNLSAADATGSDAKNKCSC*
BS04004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-PC | 388 | CG8024-PC | 1..388 | 1..388 | 2016 | 100 | Plus |
| ltd-PE | 388 | CG8024-PE | 1..388 | 1..388 | 2016 | 100 | Plus |
| ltd-PD | 222 | CG8024-PD | 3..222 | 169..388 | 1129 | 98.6 | Plus |
| ltd-PJ | 214 | CG8024-PJ | 1..214 | 175..388 | 1118 | 100 | Plus |
| ltd-PH | 214 | CG8024-PH | 1..214 | 175..388 | 1118 | 100 | Plus |
