Clone BS04005 Report

Search the DGRC for BS04005

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG15117-RA
Protein status:BS04005.pep: full length peptide match
Sequenced Size:2003

Clone Sequence Records

BS04005.3prime Sequence

967 bp (881 high quality bases) assembled on 2005-12-01

> BS04005.3prime
ATGGTCTAGAAAGCTTTTAGGATATCAGATCGGCGATGTAGGTGAAGAGA
TCTTCCGGGAAGCTGCACTGGTCCAAATCTCTGCCCAATGCAAAGTATCT
TTTGCGAAGGAGATGAGCTGCCGCTTTGGGTTGGCGCGCGCGGGTGAAAA
CACCCTTTTTATTGCCTCCCACGCGGGTGTAGCTTTGTGCTGTCTTAAAG
TCCGCAAAGTTCCATACAAACTCGCCAATGAACCAGCCCTTCTTGCGCAG
CTCATCGAAGGCCTTAAAATGGCGGGAAAACACCTCCGTCTGGAACTCCT
CCGACCACACATAAGCAGGTTGCATATGCAAGCCCTCCAAGGTATCTGCT
CCATATTCAGACATGATAATGGGTTTGTTGTAGCGTTTATTCCAGGCAAT
GGCCTCGTCGATCACATTCTGGGTTATCATGTCCAGACGTCCGGCATTTG
AGTACCAGGCATTGTAGCGATTGAAGCTGATGATGTCCAGAGAGCGGCCC
GCCTTATCCTGGGTGTTTGAAACAGCAATGGCAGCCGTGATGGGTCGGGT
TTTATCCAGAGACCGTGTGAAGTTGGCCACTAATTCAAAGTACGAATCCG
CACTCACGCTACCAGTCCGGGGTTCATTGGCAATGGACCACATCACCACA
CTTGGATGATTCCGATCCCGATGGATGAGCTGCTCCAGCGACGATTTGTG
CTTGCCCAGCAGCTCCTGGCTAAAGTTTTCTGTATCCACACTGGGACATT
CGTCGATGATCATGATGCCGTGCTCATCCGCAAACTGCATGGACTCCTCG
GAGTAGGGATAATGCGACGTGCGATACGCATTCGCTCCAATCCACTTGAG
CAGATTGAAATCGCGCACCATCAGTGCATTGTCCAGACCCTTACCCCTGA
TATCCGAATCTTCGTGTCGTCAAAACCACGGAAGTAAACGGGGCTTGCCG
TTGATCAGGAACTGCTG

BS04005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PB 2013 CG15117-RB 1109..2013 921..17 4525 100 Minus
CG15117-PA 1971 CG15117-RA 1067..1971 921..17 4525 100 Minus
CG15117-PC 1971 CG15117-RC 1067..1971 921..17 4525 100 Minus
CG15117-PB 2013 CG15117-RB 1063..1089 967..941 135 100 Minus
CG15117-PA 1971 CG15117-RA 1021..1047 967..941 135 100 Minus
CG15117-PC 1971 CG15117-RC 1021..1047 967..941 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RF 2707 CG15117-RF 1541..2491 967..17 4710 99.8 Minus
CG15117-RE 2380 CG15117-RE 1214..2164 967..17 4710 99.8 Minus
CG15117-RD 2191 CG15117-RD 1025..1975 967..17 4710 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19123499..19123737 729..967 1100 99.2 Plus
2R 25286936 2R 19122910..19123087 323..500 890 100 Plus
2R 25286936 2R 19122447..19122613 17..183 835 100 Plus
2R 25286936 2R 19123295..19123438 585..728 720 100 Plus
2R 25286936 2R 19122671..19122811 183..323 705 100 Plus
2R 25286936 2R 19123147..19123232 499..584 430 100 Plus
3R 32079331 3R 31770281..31770495 648..862 340 77.2 Plus
Blast to na_te.dros performed on 2015-02-11 18:26:51 has no hits.

BS04005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:36 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PC 1021..1971 17..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:52 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PC 1021..1971 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:46:59 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RD 1025..1980 11..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:35 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RD 1025..1980 11..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:35 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19122442..19122613 11..183 98 <- Plus
2R 19122672..19122810 184..322 100 <- Plus
2R 19122910..19123086 323..499 100 <- Plus
2R 19123148..19123232 500..584 100 <- Plus
2R 19123295..19123438 585..728 100 <- Plus
2R 19123499..19123737 729..967 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:46:59 Download gff for BS04005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15009947..15010118 11..183 98 <- Plus
arm_2R 15010177..15010315 184..322 100 <- Plus
arm_2R 15010415..15010591 323..499 100 <- Plus
arm_2R 15010653..15010737 500..584 100 <- Plus
arm_2R 15010800..15010943 585..728 100 <- Plus
arm_2R 15011004..15011242 729..967 99   Plus

BS04005.5prime Sequence

927 bp (784 high quality bases) assembled on 2005-12-01

> BS04005.5prime
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAAG
CCCTGGTGGCCCTACCTAATGCATTCC

BS04005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PA 1971 CG15117-RA 1..851 17..867 4255 100 Plus
CG15117-PB 2013 CG15117-RB 45..893 19..867 4245 100 Plus
CG15117-PC 1971 CG15117-RC 5..851 21..867 4235 100 Plus
CG15117-PA 1971 CG15117-RA 849..912 864..927 320 100 Plus
CG15117-PB 2013 CG15117-RB 891..954 864..927 320 100 Plus
CG15117-PC 1971 CG15117-RC 849..912 864..927 320 100 Plus
CG2135-PA 2061 CG2135-RA 952..978 901..927 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 2487 CG15117-RA 301..1212 17..927 4535 99.9 Plus
CG15117-RC 2211 CG15117-RC 20..936 12..927 4530 99.7 Plus
CG15117-RB 2338 CG15117-RB 154..1063 19..927 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19124537..19124941 424..20 2025 100 Minus
2R 25286936 2R 19124105..19124418 737..424 1570 100 Minus
2R 25286936 2R 19123846..19124037 927..737 910 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 02:01:28 has no hits.

BS04005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:37 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:53 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:22 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 291..1212 7..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:08 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 291..1212 7..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:08 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19123846..19124036 738..927 99 <- Minus
2R 19124105..19124417 425..737 100 <- Minus
2R 19124537..19124946 12..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:22 Download gff for BS04005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15011351..15011541 738..927 99 <- Minus
arm_2R 15011610..15011922 425..737 100 <- Minus
arm_2R 15012042..15012451 12..424 99   Minus

BS04005.complete Sequence

2003 bp assembled on 2009-12-07

GenBank Submission: KX797317

> BS04005.complete
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAA
GCCCTGGTGGCCCTACCTAATGCATTCCGAACCGGGTTATCTGTACCAGC
TGGAGATCAAATTGCTGGCGACCAACGATGAGCTCCTGGATGTCTACCGA
CTGAAAGTGGGAATACGCACACTAAGTTGGAACAGCCAGCAGTTCCTGAT
CAACGGCAAGCCCGTTTACTTCCGTGGTTTTGGACGACACGAAGATTCGG
ATATCAGGGGTAAGGGTCTGGACAATGCACTGATGGTGCGCGATTTCAAT
CTGCTCAAGTGGATTGGAGCGAATGCGTATCGCACGTCGCATTATCCCTA
CTCCGAGGAGTCCATGCAGTTTGCGGATGAGCACGGCATCATGATCATCG
ACGAATGTCCCAGTGTGGATACAGAAAACTTTAGCCAGGAGCTGCTGGGC
AAGCACAAATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCC
AAGTGTGGTGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGA
GTGCGGATTCGTACTTTGAATTAGTGGCCAACTTCACACGGTCTCTGGAT
AAAACCCGACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAA
GGCGGGCCGCTCTCTGGACATCATCAGCTTCAATCGCTACAATGCCTGGT
ACTCAAATGCCGGACGTCTGGACATGATAACCCAGAATGTGATCGACGAG
GCCATTGCCTGGAATAAACGCTACAACAAACCCATTATCATGTCTGAATA
TGGAGCAGATACCTTGGAGGGCTTGCATATGCAACCTGCTTATGTGTGGT
CGGAGGAGTTCCAGACGGAGGTGTTTTCCCGCCATTTTAAGGCCTTCGAT
GAGCTGCGCAAGAAGGGCTGGTTCATTGGCGAGTTTGTATGGAACTTTGC
GGACTTTAAGACAGCACAAAGCTACACCCGCGTGGGAGGCAATAAAAAGG
GTGTTTTCACCCGCGCGCGCCAACCCAAAGCGGCAGCTCATCTCCTTCGC
AAAAGATACTTTGCATTGGGCAGAGATTTGGACCAGTGCAGCTTCCCGGA
AGATCTCTTCACCTACATCGCCGATCTGATATCCTAAAAGCTTTCTAGAC
CAT

BS04005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 1971 CG15117-PA 1..1971 17..1987 9855 100 Plus
CG15117-RB 2013 CG15117-PB 45..2013 19..1987 9845 100 Plus
CG15117-RC 1971 CG15117-PC 1..1971 17..1987 9840 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 2487 CG15117-RA 301..2271 17..1987 9855 100 Plus
CG15117-RC 2211 CG15117-RC 20..1995 12..1987 9850 99.9 Plus
CG15117-RB 2338 CG15117-RB 154..2122 19..1987 9845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19123499..19124037 1275..737 2695 100 Minus
2R 25286936 2R 19124537..19124941 424..20 2025 100 Minus
2R 25286936 2R 19124105..19124418 737..424 1570 100 Minus
2R 25286936 2R 19122910..19123087 1681..1504 890 100 Minus
2R 25286936 2R 19122447..19122613 1987..1821 835 100 Minus
2R 25286936 2R 19123295..19123438 1419..1276 720 100 Minus
2R 25286936 2R 19122671..19122811 1821..1681 705 100 Minus
2R 25286936 2R 19123147..19123232 1505..1420 430 100 Minus
3R 32079331 3R 31770281..31770495 1356..1142 340 77.2 Minus
Blast to na_te.dros performed on 2014-11-28 02:12:38 has no hits.

BS04005.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:46 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 242..2210 17..1985 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:42 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 301..2269 17..1985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:26 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 242..2210 17..1985 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:14 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 301..2269 17..1985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:14 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19122449..19122613 1821..1985 100 <- Minus
2R 19122672..19122810 1682..1820 100 <- Minus
2R 19122910..19123086 1505..1681 100 <- Minus
2R 19123148..19123232 1420..1504 100 <- Minus
2R 19123295..19123438 1276..1419 100 <- Minus
2R 19123499..19124036 738..1275 100 <- Minus
2R 19124105..19124417 425..737 100 <- Minus
2R 19124537..19124942 17..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:42 Download gff for BS04005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15010653..15010737 1420..1504 100 <- Minus
arm_2R 15010800..15010943 1276..1419 100 <- Minus
arm_2R 15009954..15010118 1821..1985 100 <- Minus
arm_2R 15010177..15010315 1682..1820 100 <- Minus
arm_2R 15010415..15010591 1505..1681 100 <- Minus
arm_2R 15011004..15011541 738..1275 100 <- Minus
arm_2R 15011610..15011922 425..737 100 <- Minus
arm_2R 15012042..15012447 17..424 99   Minus

BS04005.pep Sequence

Translation from 16 to 1986

> BS04005.pep
MALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLYPRESETREVRSLDG
IWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPVPASYNDITTDNLRD
HVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYVWINGQKVVKHEMGH
LPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGRITEVPNDGGMTIVQ
SYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLSKDATVGEVFYSVSV
NGSAANEADNVLQIQANLYDKDGILVANATSDQKLGGKLQVNPVKPWWPY
LMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTLSWNSQQFLINGKPV
YFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGANAYRTSHYPYSEESM
QFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQLIHRDRNHPSVVMW
SIANEPRTGSVSADSYFELVANFTRSLDKTRPITAAIAVSNTQDKAGRSL
DIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRYNKPIIMSEYGADTL
EGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWFIGEFVWNFADFKTA
QSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGRDLDQCSFPEDLFTY
IADLIS*

BS04005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PA 656 CG15117-PA 1..656 1..656 3470 100 Plus
CG15117-PC 656 CG15117-PC 1..656 1..656 3467 99.8 Plus
CG15117-PB 670 CG15117-PB 16..670 2..656 3465 100 Plus
CG15117-PD 648 CG15117-PD 3..648 9..656 3378 98.6 Plus
CG15117-PF 623 CG15117-PF 1..623 34..656 3311 100 Plus