Clone Sequence Records
BS04006.3prime Sequence
956 bp (866 high quality bases) assembled on 2005-09-08
> BS04006.3prime
ATGGTCTAGAAAGCTTTCAGTTTGATGAGCCAATGCCGGTTAGCTCCTGC
AGCTCCTTGAGCAAGTGCTTATTGTACTCCTTGTGATTGATAGGGGCTAC
AGACTGCACAGTGAGCTTGTTGCGAGTCATGTCCCCGTAAACCTCGTTCT
TGCAGCGCAGCTTAAAGATGTGTGAAGTGAAGTTGAGTGCTGAGAAAATC
TGCTCGGCTTTGGCAGGGTCGTTCTCAAGGGCCTCACCCACTTCCTGCGA
AGTGTGCCCGAGAAGCTGTTCACCGACCTCGTTAAAACTGCTGACCCAAC
GGTTGGAAGTCCAGTCCCCGATGCTCATGTTGATCAGCAGTCGGTACTTA
AAGTTGGGAAACAGTGCGTTACATTTCTCGCAGCGGAACTGGTCGTTGCC
CTCATCGACAACCTTCTTGTTGCAGTCGCTCTGAGGGCAGGCTCGGTAGA
AAGCATTTTCCTGTTTGACAATGTGCACCACTGCCTTGCACTGGAAGTAA
TCAGGCTTGTCGCCGCTGCCGAGATTGCGAGCCCGCGCATCCTTAAGCGT
CATCCATTCAGTAGAGAAGCTTCCTCCGCCCGTTCGCGCCGAAACCATAT
TGGCGACACTGTCACCACCTCCATTGTCGAACCAGCCGCGCAGCTTATGT
GCCTCGGGTATATCGGGGTTAATCTTCATGATTGAGCCACCGCCGAGGCT
CAAGGACTTTCCGCCATTGAACTCGTTAATGCGTGTTCCCTTGACCAGGA
TCACAGGCTGCACATGACCGTCAAAGTTAACGGCATCATCCCCCCAAAGG
GTCAAGCTGATGGCCGAGTTACTCATGTCCACTAGGGTTATGTCCCGTTT
CTTGAATTCCTTGTTTGTGGTGCGAGCTACGAATGATTGCAACTCGCCCA
CTCCTTGCAAATCCTATTGTGTCTACCGCTGCTTATTTTTCATACCCGAC
ACATCG
BS04006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9633-PA | 1812 | RpA-70-RA | 928..1812 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 951..1893 | 956..17 | 4625 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8262753..8263383 | 329..956 | 2990 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8262362..8262673 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:21:53 has no hits.
BS04006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:38 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9633-PA | 870..1812 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:54 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9633-PA | 870..1812 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:33:46 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 951..1896 | 11..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:30 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 951..1896 | 11..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:30 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8262359..8262673 | 11..328 | 99 | <- | Plus |
| 3R | 8262753..8263383 | 329..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:33:46 Download gff for
BS04006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4088081..4088395 | 11..328 | 99 | <- | Plus |
| arm_3R | 4088475..4089105 | 329..956 | 99 | | Plus |
BS04006.5prime Sequence
868 bp (788 high quality bases) assembled on 2005-12-01
> BS04006.5prime
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTTCCGGTGAAACAGTTGTCCAGCTTTGTGAAGATACCGACGATGATCC
CATACCGGGAAATTAAGT
BS04006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9633-PA | 1812 | RpA-70-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
| CG9633-PA | 1812 | RpA-70-RA | 783..841 | 800..858 | 270 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 82..931 | 17..868 | 4195 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8263412..8263971 | 858..298 | 2740 | 99.6 | Minus |
| 3R | 32079331 | 3R | 8264029..8264273 | 297..53 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:08:32 has no hits.
BS04006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:39 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9633-PA | 1..850 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:55 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9633-PA | 1..850 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:25 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 71..931 | 5..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:16 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 71..931 | 5..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:16 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8263403..8263971 | 298..868 | 99 | <- | Minus |
| 3R | 8264029..8264273 | 53..297 | 100 | <- | Minus |
| 3R | 8264335..8264381 | 5..52 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:25 Download gff for
BS04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4089125..4089693 | 298..868 | 99 | <- | Minus |
| arm_3R | 4089751..4089995 | 53..297 | 100 | <- | Minus |
| arm_3R | 4090057..4090103 | 5..52 | 91 | | Minus |
BS04006.complete Sequence
1844 bp assembled on 2008-01-02
GenBank Submission: FJ634828
> BS04006.complete
GAAGTTATCAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTG
CTCGCATTATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTG
GCAATCAAGAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCT
AATCTCCGACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGC
TGAACGTGATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAG
CTAGATAAATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACG
CGTTCTCATCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTA
AGTCCAAAATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGAT
CTGGCGCCTAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAA
GGAACCGAGCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTA
ATAGTGGAATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAG
TGGGTGATTAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAG
CAATGCCCGCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAAT
CGGGCGAAATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTAC
GACCTCATTCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAA
ACCGGCAAACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTT
TTTCCGGTGAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCC
ATACCGGAAATTAAGTACAACCTTGTTCCTATTTCCGATGTGTCGGGTAT
GGAAAATAAAGCAGCGGTAGACACAATAGGAATTTGCAAGGAGGTGGGCG
AGTTGCAATCATTCGTAGCTCGCACCACAAACAAGGAATTCAAGAAACGG
GACATAACCCTAGTGGACATGAGTAACTCGGCCATCAGCTTGACCCTTTG
GGGGGATGATGCCGTTAACTTTGACGGTCATGTGCAGCCTGTGATCCTGG
TCAAGGGAACACGCATTAACGAGTTCAATGGCGGAAAGTCCTTGAGCCTC
GGCGGTGGCTCAATCATGAAGATTAACCCCGATATACCCGAGGCACATAA
GCTGCGCGGCTGGTTCGACAATGGAGGTGGTGACAGTGTCGCCAATATGG
TTTCGGCGCGAACGGGCGGAGGAAGCTTCTCTACTGAATGGATGACGCTT
AAGGATGCGCGGGCTCGCAATCTCGGCAGCGGCGACAAGCCTGATTACTT
CCAGTGCAAGGCAGTGGTGCACATTGTCAAACAGGAAAATGCTTTCTACC
GAGCCTGCCCTCAGAGCGACTGCAACAAGAAGGTTGTCGATGAGGGCAAC
GACCAGTTCCGCTGCGAGAAATGTAACGCACTGTTTCCCAACTTTAAGTA
CCGACTGCTGATCAACATGAGCATCGGGGACTGGACTTCCAACCGTTGGG
TCAGCAGTTTTAACGAGGTCGGTGAACAGCTTCTCGGGCACACTTCGCAG
GAAGTGGGTGAGGCCCTTGAGAACGACCCTGCCAAAGCCGAGCAGATTTT
CTCAGCACTCAACTTCACTTCACACATCTTTAAGCTGCGCTGCAAGAACG
AGGTTTACGGGGACATGACTCGCAACAAGCTCACTGTGCAGTCTGTAGCC
CCTATCAATCACAAGGAGTACAATAAGCACTTGCTCAAGGAGCTGCAGGA
GCTAACCGGCATTGGCTCATCAAACTGAAAGCTTTCTAGACCAT
BS04006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 1812 | CG9633-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 82..1893 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8262753..8263971 | 1516..298 | 6095 | 100 | Minus |
| 3R | 32079331 | 3R | 8262362..8262673 | 1828..1517 | 1560 | 100 | Minus |
| 3R | 32079331 | 3R | 8264029..8264273 | 297..53 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:42:02 has no hits.
BS04006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:33 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 1..1812 | 17..1828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:06 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 80..1890 | 17..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:45 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 82..1892 | 17..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:33 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 69..1894 | 5..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:31 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 82..1892 | 17..1827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:31 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8262363..8262673 | 1517..1827 | 100 | <- | Minus |
| 3R | 8262753..8263971 | 298..1516 | 100 | <- | Minus |
| 3R | 8264029..8264273 | 53..297 | 100 | <- | Minus |
| 3R | 8264335..8264370 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:45 Download gff for
BS04006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4088085..4088395 | 1517..1827 | 100 | <- | Minus |
| arm_3R | 4088475..4089693 | 298..1516 | 100 | <- | Minus |
| arm_3R | 4089751..4089995 | 53..297 | 100 | <- | Minus |
| arm_3R | 4090057..4090092 | 17..52 | 100 | | Minus |
BS04006.pep Sequence
Translation from 16 to 1827
> BS04006.pep
MVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGK
YFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIIS
ELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHN
NNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGE
GKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ
YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA
VDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAV
NFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF
DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAV
VHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLIN
MSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNF
TSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELTGIG
SSN*
BS04006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-PA | 603 | CG9633-PA | 1..603 | 1..603 | 3127 | 100 | Plus |
