Clone BS04008 Report

Search the DGRC for BS04008

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptconu-RA
Protein status:BS04008.pep: full length peptide match
Sequenced Size:1922

Clone Sequence Records

BS04008.complete Sequence

1922 bp assembled on 2009-12-07

GenBank Submission: KX796504

> BS04008.complete
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAGAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTC
CTGAGCTTTGAAAGTATTTGTCGAGATTCTTCTAGTCTTGATAGCTGCGA
AGTCCTAGATACCTGTGATATCCCTTCAACGCTATTCACAGATGTCGTAT
TAATAAGCGAAACTGACATGAAACGTTTACAGACAATACTTTGGTTAGAG
TTAGCCACAATATTTGATCGCAACAAAGTTTCTTTAGATAAAAGAAAACC
TTTTAAGCGTCGTCGCAAAGAAGAGGGTAATCTTTTTGGGGTATCTATAA
ACGCTCTTATTCGTCGGGATCAGCAAGTTACTGGCACTGACTCATCTTTG
GTCCCACTATTTTTGGAAAAGCTAATTGGCGAACTTCTGCGACGTGGCTC
TAGAGAAGAAGGATTACTTCGAATAGGTGGTCATAAACAAAAGACTGAAT
TACTTTATAATGAATTAGAATCAACATTTTATCAAAATCCAGATAATCTA
GATAACCTCTTTCGCACAGCTACTGTTCATGAACTTAGTTCGTTGCTAAA
ACGATGGCTGCGCGAACTTCCTCAACCTTTGCTTACTAATGAGCTTATAC
AACTGTTTTATCAATGTCACACACTTCCATCAATAGATCAAATGAATGCA
CTATCGATTTTATGTCACCTGCTTCCGCCTGAAAATAGAAACACATTACG
TTCATTATTAAGCTTTTTTAATATTATAATTAATTTAAAAGATATAAACA
AAATGAATGTGCATAACGTAGCAACAATAATGGCACCGTCAATGTTTCCA
CCACGTTATATACATCCGAGTGACAATAACAGCATTGCAGAACAAGTAAG
AATGGCCGCTCAGTGTTGCCGTTTGACGAATATTTTAATCCTACGTGGCG
AAAAACTTTTCCAAGTACCAAACAATTTAATTGTGGAGTCACAGAAAACA
ATGATGGGTAAGAAAGGATGGCATCGGCATCGGAATTCAAATGAAATTAC
GGCAAAACCAAGCGGAAAGGCGAGCAATGTCGGCGTTGGACACGACTCTA
CAGTTATAAATAAATACTCAACCAATTTAAAGCATTTACATCCATTTGTT
ATTTAAAAGCTTTCTAGACCAT

BS04008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 1890 CG17082-PI 1..1890 17..1906 9450 100 Plus
conu-RG 1890 CG17082-PG 1..1890 17..1906 9450 100 Plus
conu-RA 1890 CG17082-PA 1..1890 17..1906 9450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 84..1974 17..1907 9455 100 Plus
conu-RG 2098 CG17082-RG 112..2002 17..1907 9455 100 Plus
conu-RA 2210 CG17082-RA 224..2114 17..1907 9455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4757234..4757749 1242..1757 2580 100 Plus
2R 25286936 2R 4756654..4757165 732..1243 2560 100 Plus
2R 25286936 2R 4756316..4756588 460..732 1365 100 Plus
2R 25286936 2R 4754500..4754671 200..371 860 100 Plus
2R 25286936 2R 4757801..4757952 1756..1907 760 100 Plus
2R 25286936 2R 4749272..4749386 17..131 575 100 Plus
2R 25286936 2R 4756171..4756259 371..459 445 100 Plus
2R 25286936 2R 4749444..4749514 130..200 355 100 Plus
Blast to na_te.dros performed 2014-11-28 02:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2504..2593 1486..1571 116 62.2 Plus

BS04008.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:54 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 122..2009 17..1904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:27 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 105..1992 17..1904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:25 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 122..2009 17..1904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:52 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
conu-RA 224..2111 17..1904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:52 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4754500..4754670 200..370 100 -> Plus
2R 4756171..4756259 371..459 100 -> Plus
2R 4749272..4749386 17..131 100 -> Plus
2R 4749446..4749513 132..199 100 -> Plus
2R 4756316..4756588 460..732 100 -> Plus
2R 4756655..4757165 733..1243 100 -> Plus
2R 4757236..4757748 1244..1756 100 -> Plus
2R 4757802..4757949 1757..1904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:27 Download gff for BS04008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 636777..636891 17..131 100 -> Plus
arm_2R 636951..637018 132..199 100 -> Plus
arm_2R 642005..642175 200..370 100 -> Plus
arm_2R 643676..643764 371..459 100 -> Plus
arm_2R 643821..644093 460..732 100 -> Plus
arm_2R 644160..644670 733..1243 100 -> Plus
arm_2R 644741..645253 1244..1756 100 -> Plus
arm_2R 645307..645454 1757..1904 100   Plus

BS04008.3prime Sequence

828 bp (764 high quality bases) assembled on 2005-12-01

> BS04008.3prime
ATGGTCTAGAAAGCTTTTAAATAACAAATGGATGTAAATGCTTTAAATTG
GTTGAGTATTTATTTATAACTGTAGAGTCGTGTCCAACGCCGACATTGCT
CGCCTTTCCGCTTGGTTTTGCCGTAATTTCATTTGAATTCCGATGCCGAT
GCCATCCTTTCTTACCCATCATTGTTTTCTGTGACTCCACAATTAAATTG
TTTGGTACTTGGAAAAGTTTTTCGCCACGTAGGATTAAAATATTCGTCAA
ACGGCAACACTGAGCGGCCATTCTTACTTGTTCTGCAATGCTGTTATTGT
CACTCGGATGTATATAACGTGGTGGAAACATTGACGGTGCCATTATTGTT
GCTACGTTATGCACATTCATTTTGTTTATATCTTTTAAATTAATTATAAT
ATTAAAAAAGCTTAATAATGAACGTAATGTGTTTCTATTTTCAGGCGGAA
GCAGGTGACATAAAATCGATAGTGCATTCATTTGATCTATTGATGGAAGT
GTGTGACATTGATAAAACAGTTGTATAAGCTCATTAGTAAGCAAAGGTTG
AGGAAGTTCGCGCAGCCATCGTTTTAGCAACGAACTAAGTTCATGAACAG
TAGCTGTGCGAAAGAGGTTATCTAGATTATCTGGATTTTGATAAAATGTT
GATTCTAATTCATTATAAAGTAATTCAGTCTTTTGTTTATGACCACCTAT
TCGAAGTAATCCTTCTTCTCTAGAGCCACGTCGCAGAAGTTCGCCAATTA
GCTTTTCCAAAAATAGTGGGACCAAAGATGAGTCAGTGCCAGTAACTTGC
TGATCCCGACGAATAAGAGCGTTTATAG

BS04008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17082-PE 1890 CG17082-RE 1079..1890 828..17 4060 100 Minus
CG17082-PB 1890 CG17082-RB 1079..1890 828..17 4060 100 Minus
CG17082-PD 1890 CG17082-RD 1079..1890 828..17 4060 100 Minus
CG17082-PA 1890 CG17082-RA 1079..1890 828..17 4060 100 Minus
CG17082-PC 1998 CG17082-RC 1187..1998 828..17 4060 100 Minus
CG17082-PF 1890 CG17082-RF 1079..1890 828..17 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 1162..1974 828..16 4065 100 Minus
conu-RG 2098 CG17082-RG 1190..2002 828..16 4065 100 Minus
conu-RA 2210 CG17082-RA 1302..2114 828..16 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4757234..4757749 681..166 2580 100 Minus
2R 25286936 2R 4757801..4757952 167..16 760 100 Minus
2R 25286936 2R 4757017..4757165 828..680 745 100 Minus
Blast to na_te.dros performed 2015-02-11 10:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2504..2593 437..352 116 62.2 Minus

BS04008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:09 Download gff for BS04008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-PF 1079..1890 17..828 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:56 Download gff for BS04008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-RA 1296..2108 16..828 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:06 Download gff for BS04008.3prime
Subject Subject Range Query Range Percent Splice Strand
conu-RA 1302..2114 16..828 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:06 Download gff for BS04008.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4757017..4757165 680..828 100 -> Minus
2R 4757236..4757748 167..679 100 -> Minus
2R 4757802..4757952 16..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:56 Download gff for BS04008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 644522..644670 680..828 100 -> Minus
arm_2R 644741..645253 167..679 100 -> Minus
arm_2R 645307..645457 16..166 100   Minus

BS04008.5prime Sequence

832 bp (714 high quality bases) assembled on 2005-12-01

> BS04008.5prime
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAAAGAATGAATGCGGTCGCCTTTTA

BS04008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17082-PE 1890 CG17082-RE 1..816 17..832 4055 99.8 Plus
CG17082-PB 1890 CG17082-RB 1..816 17..832 4055 99.8 Plus
CG17082-PD 1890 CG17082-RD 1..816 17..832 4055 99.8 Plus
CG17082-PA 1890 CG17082-RA 1..816 17..832 4055 99.8 Plus
CG17082-PC 1998 CG17082-RC 109..924 17..832 4055 99.8 Plus
CG17082-PF 1890 CG17082-RF 1..816 17..832 4055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
conu-RI 2070 CG17082-RI 84..899 17..832 4065 99.9 Plus
conu-RG 2098 CG17082-RG 112..927 17..832 4065 99.9 Plus
conu-RA 2210 CG17082-RA 224..1039 17..832 4065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4756316..4756588 460..732 1365 100 Plus
2R 25286936 2R 4754500..4754671 200..371 860 100 Plus
2R 25286936 2R 4749272..4749386 17..131 575 100 Plus
2R 25286936 2R 4756654..4756754 732..832 490 99 Plus
2R 25286936 2R 4756171..4756259 371..459 445 100 Plus
2R 25286936 2R 4749444..4749514 130..200 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:43:27 has no hits.

BS04008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:10 Download gff for BS04008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-PF 1..815 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:49 Download gff for BS04008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17082-RD 105..919 17..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:46 Download gff for BS04008.5prime
Subject Subject Range Query Range Percent Splice Strand
conu-RA 224..1038 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:46 Download gff for BS04008.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4749272..4749386 17..131 100 -> Plus
2R 4749446..4749513 132..199 100 -> Plus
2R 4754500..4754670 200..370 100 -> Plus
2R 4756171..4756259 371..459 100 -> Plus
2R 4756316..4756588 460..732 100 -> Plus
2R 4756655..4756753 733..831 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:49 Download gff for BS04008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 636777..636891 17..131 100 -> Plus
arm_2R 636951..637018 132..199 100 -> Plus
arm_2R 642005..642175 200..370 100 -> Plus
arm_2R 643676..643764 371..459 100 -> Plus
arm_2R 643821..644093 460..732 100 -> Plus
arm_2R 644160..644258 733..831 98   Plus

BS04008.pep Sequence

Translation from 16 to 1905

> BS04008.pep
MNSNTDLHHSDDQDFSEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSA
GYPELTKPFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRT
KSRPKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPT
FVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQV
RCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDA
RSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTC
DIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRR
KEEGNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGL
LRIGGHKQKTELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRE
LPQPLLTNELIQLFYQCHTLPSIDQMNALSILCHLLPPENRNTLRSLLSF
FNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQC
CRLTNILILRGEKLFQVPNNLIVESQKTMMGKKGWHRHRNSNEITAKPSG
KASNVGVGHDSTVINKYSTNLKHLHPFVI*

BS04008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
conu-PI 629 CG17082-PI 1..629 1..629 3251 100 Plus
conu-PG 629 CG17082-PG 1..629 1..629 3251 100 Plus
conu-PA 629 CG17082-PA 1..629 1..629 3251 100 Plus
conu-PD 629 CG17082-PD 1..629 1..629 3251 100 Plus
conu-PB 629 CG17082-PB 1..629 1..629 3251 100 Plus