Clone Sequence Records
BS04008.complete Sequence
1922 bp assembled on 2009-12-07
GenBank Submission: KX796504
> BS04008.complete
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAGAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTC
CTGAGCTTTGAAAGTATTTGTCGAGATTCTTCTAGTCTTGATAGCTGCGA
AGTCCTAGATACCTGTGATATCCCTTCAACGCTATTCACAGATGTCGTAT
TAATAAGCGAAACTGACATGAAACGTTTACAGACAATACTTTGGTTAGAG
TTAGCCACAATATTTGATCGCAACAAAGTTTCTTTAGATAAAAGAAAACC
TTTTAAGCGTCGTCGCAAAGAAGAGGGTAATCTTTTTGGGGTATCTATAA
ACGCTCTTATTCGTCGGGATCAGCAAGTTACTGGCACTGACTCATCTTTG
GTCCCACTATTTTTGGAAAAGCTAATTGGCGAACTTCTGCGACGTGGCTC
TAGAGAAGAAGGATTACTTCGAATAGGTGGTCATAAACAAAAGACTGAAT
TACTTTATAATGAATTAGAATCAACATTTTATCAAAATCCAGATAATCTA
GATAACCTCTTTCGCACAGCTACTGTTCATGAACTTAGTTCGTTGCTAAA
ACGATGGCTGCGCGAACTTCCTCAACCTTTGCTTACTAATGAGCTTATAC
AACTGTTTTATCAATGTCACACACTTCCATCAATAGATCAAATGAATGCA
CTATCGATTTTATGTCACCTGCTTCCGCCTGAAAATAGAAACACATTACG
TTCATTATTAAGCTTTTTTAATATTATAATTAATTTAAAAGATATAAACA
AAATGAATGTGCATAACGTAGCAACAATAATGGCACCGTCAATGTTTCCA
CCACGTTATATACATCCGAGTGACAATAACAGCATTGCAGAACAAGTAAG
AATGGCCGCTCAGTGTTGCCGTTTGACGAATATTTTAATCCTACGTGGCG
AAAAACTTTTCCAAGTACCAAACAATTTAATTGTGGAGTCACAGAAAACA
ATGATGGGTAAGAAAGGATGGCATCGGCATCGGAATTCAAATGAAATTAC
GGCAAAACCAAGCGGAAAGGCGAGCAATGTCGGCGTTGGACACGACTCTA
CAGTTATAAATAAATACTCAACCAATTTAAAGCATTTACATCCATTTGTT
ATTTAAAAGCTTTCTAGACCAT
BS04008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
conu-RI | 1890 | CG17082-PI | 1..1890 | 17..1906 | 9450 | 100 | Plus |
conu-RG | 1890 | CG17082-PG | 1..1890 | 17..1906 | 9450 | 100 | Plus |
conu-RA | 1890 | CG17082-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
conu-RI | 2070 | CG17082-RI | 84..1974 | 17..1907 | 9455 | 100 | Plus |
conu-RG | 2098 | CG17082-RG | 112..2002 | 17..1907 | 9455 | 100 | Plus |
conu-RA | 2210 | CG17082-RA | 224..2114 | 17..1907 | 9455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4757234..4757749 | 1242..1757 | 2580 | 100 | Plus |
2R | 25286936 | 2R | 4756654..4757165 | 732..1243 | 2560 | 100 | Plus |
2R | 25286936 | 2R | 4756316..4756588 | 460..732 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 4754500..4754671 | 200..371 | 860 | 100 | Plus |
2R | 25286936 | 2R | 4757801..4757952 | 1756..1907 | 760 | 100 | Plus |
2R | 25286936 | 2R | 4749272..4749386 | 17..131 | 575 | 100 | Plus |
2R | 25286936 | 2R | 4756171..4756259 | 371..459 | 445 | 100 | Plus |
2R | 25286936 | 2R | 4749444..4749514 | 130..200 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 2504..2593 | 1486..1571 | 116 | 62.2 | Plus |
BS04008.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:54 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-RD | 122..2009 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:27 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-RD | 105..1992 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:25 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-RD | 122..2009 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:52 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
conu-RA | 224..2111 | 17..1904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:52 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4754500..4754670 | 200..370 | 100 | -> | Plus |
2R | 4756171..4756259 | 371..459 | 100 | -> | Plus |
2R | 4749272..4749386 | 17..131 | 100 | -> | Plus |
2R | 4749446..4749513 | 132..199 | 100 | -> | Plus |
2R | 4756316..4756588 | 460..732 | 100 | -> | Plus |
2R | 4756655..4757165 | 733..1243 | 100 | -> | Plus |
2R | 4757236..4757748 | 1244..1756 | 100 | -> | Plus |
2R | 4757802..4757949 | 1757..1904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:27 Download gff for
BS04008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 636777..636891 | 17..131 | 100 | -> | Plus |
arm_2R | 636951..637018 | 132..199 | 100 | -> | Plus |
arm_2R | 642005..642175 | 200..370 | 100 | -> | Plus |
arm_2R | 643676..643764 | 371..459 | 100 | -> | Plus |
arm_2R | 643821..644093 | 460..732 | 100 | -> | Plus |
arm_2R | 644160..644670 | 733..1243 | 100 | -> | Plus |
arm_2R | 644741..645253 | 1244..1756 | 100 | -> | Plus |
arm_2R | 645307..645454 | 1757..1904 | 100 | | Plus |
BS04008.3prime Sequence
828 bp (764 high quality bases) assembled on 2005-12-01
> BS04008.3prime
ATGGTCTAGAAAGCTTTTAAATAACAAATGGATGTAAATGCTTTAAATTG
GTTGAGTATTTATTTATAACTGTAGAGTCGTGTCCAACGCCGACATTGCT
CGCCTTTCCGCTTGGTTTTGCCGTAATTTCATTTGAATTCCGATGCCGAT
GCCATCCTTTCTTACCCATCATTGTTTTCTGTGACTCCACAATTAAATTG
TTTGGTACTTGGAAAAGTTTTTCGCCACGTAGGATTAAAATATTCGTCAA
ACGGCAACACTGAGCGGCCATTCTTACTTGTTCTGCAATGCTGTTATTGT
CACTCGGATGTATATAACGTGGTGGAAACATTGACGGTGCCATTATTGTT
GCTACGTTATGCACATTCATTTTGTTTATATCTTTTAAATTAATTATAAT
ATTAAAAAAGCTTAATAATGAACGTAATGTGTTTCTATTTTCAGGCGGAA
GCAGGTGACATAAAATCGATAGTGCATTCATTTGATCTATTGATGGAAGT
GTGTGACATTGATAAAACAGTTGTATAAGCTCATTAGTAAGCAAAGGTTG
AGGAAGTTCGCGCAGCCATCGTTTTAGCAACGAACTAAGTTCATGAACAG
TAGCTGTGCGAAAGAGGTTATCTAGATTATCTGGATTTTGATAAAATGTT
GATTCTAATTCATTATAAAGTAATTCAGTCTTTTGTTTATGACCACCTAT
TCGAAGTAATCCTTCTTCTCTAGAGCCACGTCGCAGAAGTTCGCCAATTA
GCTTTTCCAAAAATAGTGGGACCAAAGATGAGTCAGTGCCAGTAACTTGC
TGATCCCGACGAATAAGAGCGTTTATAG
BS04008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17082-PE | 1890 | CG17082-RE | 1079..1890 | 828..17 | 4060 | 100 | Minus |
CG17082-PB | 1890 | CG17082-RB | 1079..1890 | 828..17 | 4060 | 100 | Minus |
CG17082-PD | 1890 | CG17082-RD | 1079..1890 | 828..17 | 4060 | 100 | Minus |
CG17082-PA | 1890 | CG17082-RA | 1079..1890 | 828..17 | 4060 | 100 | Minus |
CG17082-PC | 1998 | CG17082-RC | 1187..1998 | 828..17 | 4060 | 100 | Minus |
CG17082-PF | 1890 | CG17082-RF | 1079..1890 | 828..17 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
conu-RI | 2070 | CG17082-RI | 1162..1974 | 828..16 | 4065 | 100 | Minus |
conu-RG | 2098 | CG17082-RG | 1190..2002 | 828..16 | 4065 | 100 | Minus |
conu-RA | 2210 | CG17082-RA | 1302..2114 | 828..16 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4757234..4757749 | 681..166 | 2580 | 100 | Minus |
2R | 25286936 | 2R | 4757801..4757952 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 4757017..4757165 | 828..680 | 745 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 2504..2593 | 437..352 | 116 | 62.2 | Minus |
BS04008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:09 Download gff for
BS04008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-PF | 1079..1890 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:56 Download gff for
BS04008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-RA | 1296..2108 | 16..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:06 Download gff for
BS04008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
conu-RA | 1302..2114 | 16..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:06 Download gff for
BS04008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4757017..4757165 | 680..828 | 100 | -> | Minus |
2R | 4757236..4757748 | 167..679 | 100 | -> | Minus |
2R | 4757802..4757952 | 16..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:56 Download gff for
BS04008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 644522..644670 | 680..828 | 100 | -> | Minus |
arm_2R | 644741..645253 | 167..679 | 100 | -> | Minus |
arm_2R | 645307..645457 | 16..166 | 100 | | Minus |
BS04008.5prime Sequence
832 bp (714 high quality bases) assembled on 2005-12-01
> BS04008.5prime
GAAGTTATCAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATG
ATCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCC
CAAAGTATCGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGA
GTGGCTAGTTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAG
GGTTAGAGGTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCG
AAGCCCCATGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAAC
AGTACGGGTGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGG
ATGTATTTCGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGT
GCCACTCCGGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAA
CAATTCTTTACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTG
CCATACAATGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTG
CGACGAACCCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATT
TCGTGGTTCGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTG
TAGAATTGCTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAAC
CGATCCGTCTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAG
AAGTGAAAATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGT
CAGCCTCAAAGAATGAATGCGGTCGCCTTTTA
BS04008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17082-PE | 1890 | CG17082-RE | 1..816 | 17..832 | 4055 | 99.8 | Plus |
CG17082-PB | 1890 | CG17082-RB | 1..816 | 17..832 | 4055 | 99.8 | Plus |
CG17082-PD | 1890 | CG17082-RD | 1..816 | 17..832 | 4055 | 99.8 | Plus |
CG17082-PA | 1890 | CG17082-RA | 1..816 | 17..832 | 4055 | 99.8 | Plus |
CG17082-PC | 1998 | CG17082-RC | 109..924 | 17..832 | 4055 | 99.8 | Plus |
CG17082-PF | 1890 | CG17082-RF | 1..816 | 17..832 | 4055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
conu-RI | 2070 | CG17082-RI | 84..899 | 17..832 | 4065 | 99.9 | Plus |
conu-RG | 2098 | CG17082-RG | 112..927 | 17..832 | 4065 | 99.9 | Plus |
conu-RA | 2210 | CG17082-RA | 224..1039 | 17..832 | 4065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4756316..4756588 | 460..732 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 4754500..4754671 | 200..371 | 860 | 100 | Plus |
2R | 25286936 | 2R | 4749272..4749386 | 17..131 | 575 | 100 | Plus |
2R | 25286936 | 2R | 4756654..4756754 | 732..832 | 490 | 99 | Plus |
2R | 25286936 | 2R | 4756171..4756259 | 371..459 | 445 | 100 | Plus |
2R | 25286936 | 2R | 4749444..4749514 | 130..200 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:43:27 has no hits.
BS04008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:10 Download gff for
BS04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-PF | 1..815 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:49 Download gff for
BS04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17082-RD | 105..919 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:46 Download gff for
BS04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
conu-RA | 224..1038 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:46 Download gff for
BS04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4749272..4749386 | 17..131 | 100 | -> | Plus |
2R | 4749446..4749513 | 132..199 | 100 | -> | Plus |
2R | 4754500..4754670 | 200..370 | 100 | -> | Plus |
2R | 4756171..4756259 | 371..459 | 100 | -> | Plus |
2R | 4756316..4756588 | 460..732 | 100 | -> | Plus |
2R | 4756655..4756753 | 733..831 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:49 Download gff for
BS04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 636777..636891 | 17..131 | 100 | -> | Plus |
arm_2R | 636951..637018 | 132..199 | 100 | -> | Plus |
arm_2R | 642005..642175 | 200..370 | 100 | -> | Plus |
arm_2R | 643676..643764 | 371..459 | 100 | -> | Plus |
arm_2R | 643821..644093 | 460..732 | 100 | -> | Plus |
arm_2R | 644160..644258 | 733..831 | 98 | | Plus |
BS04008.pep Sequence
Translation from 16 to 1905
> BS04008.pep
MNSNTDLHHSDDQDFSEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSA
GYPELTKPFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRT
KSRPKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPT
FVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQV
RCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDA
RSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTC
DIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRR
KEEGNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGL
LRIGGHKQKTELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRE
LPQPLLTNELIQLFYQCHTLPSIDQMNALSILCHLLPPENRNTLRSLLSF
FNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQC
CRLTNILILRGEKLFQVPNNLIVESQKTMMGKKGWHRHRNSNEITAKPSG
KASNVGVGHDSTVINKYSTNLKHLHPFVI*
BS04008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
conu-PI | 629 | CG17082-PI | 1..629 | 1..629 | 3251 | 100 | Plus |
conu-PG | 629 | CG17082-PG | 1..629 | 1..629 | 3251 | 100 | Plus |
conu-PA | 629 | CG17082-PA | 1..629 | 1..629 | 3251 | 100 | Plus |
conu-PD | 629 | CG17082-PD | 1..629 | 1..629 | 3251 | 100 | Plus |
conu-PB | 629 | CG17082-PB | 1..629 | 1..629 | 3251 | 100 | Plus |