Clone Sequence Records
BS04009.3prime Sequence
807 bp (806 high quality bases) assembled on 2005-12-01
> BS04009.3prime
ATGGTCTAGAAAGCTTTTATGAGGAGGAGGAGGCAGCTTTGGTTTTTGGC
GCGCCCTTAGTGCGACCTTCACTGTTCAGTCCAGCTAGAAGTTCGCTCTT
GCGGATGCTCTTCAAATCCAGATCGCCGTAGTAGTCCTCACACCCGGGAA
CATCCTCGGGATCCTCGCAGTTGCCAGTGCCATCACTGTCGCCAATCTTG
AACACTGTGCCGATGGGGCATCCGTACTCGCGTGCCACACCCTCCAGGCA
GATGTAGTACTTGCGGCAGTCCTCGGGATGGGCGTGGCGCGAGAAGGATC
CGGCGTTGGCCAGCTCACCAGCCGCCGGGCAAGAGAATCCGTTGGCCACC
TCTTCGTTCTTGCACTCAGGCACCTGGTCAGCCCACATGCACACGCGAGC
ATCGCGATCGTAAGCCAATCCGGGGGAGCACTGGTATCTGGAGGGCTCGC
CGTTCCAGCAGTTCCAGAACACGTCGCACTTGTTCTCATCGGGGAAGATG
CCGTACAGGCGAGAGCAGTGGGGGGTGGTAATTGGGGGCTCCAGCTCTGT
GCGATCGCCGCAATCCACGTTGTGTAGATAGTCGCAGTTTTCGGTTAGGT
ACTTGGAGTCTGTGGCATCGAAAGCCAGACCGTTTCCACAGGTCTTCAGC
TCGGAAACGCCGTTGTCGCACTTCCAGTACTTGTCGCAGGACGTGTCATG
TGGATAGAATCCAAAGTCATCGGGACACTTAAAGCTACTTTGGGCCACAG
CGGCTCCGAATAATGCCACAAACACCACGAGAAACTTCTTCATGTCGACT
GATAACT
BS04009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10287-PA | 777 | Gasp-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..913 | 793..16 | 3890 | 100 | Minus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 793..122 | 3315 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 141..353 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 6094811..6095021 | 541..751 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 6094504..6094693 | 352..541 | 950 | 100 | Plus |
3R | 32079331 | 3R | 6093550..6093675 | 16..141 | 630 | 100 | Plus |
3R | 32079331 | 3R | 6100710..6100752 | 751..793 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:28:54 has no hits.
BS04009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:43 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:58 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10287-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:19 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:41 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 16..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:41 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6093550..6093674 | 16..140 | 100 | <- | Plus |
3R | 6094227..6094437 | 141..351 | 100 | <- | Plus |
3R | 6094504..6094692 | 352..540 | 100 | <- | Plus |
3R | 6094811..6095020 | 541..750 | 100 | <- | Plus |
3R | 6100710..6100759 | 751..802 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:19 Download gff for
BS04009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919272..1919396 | 16..140 | 100 | <- | Plus |
arm_3R | 1919949..1920159 | 141..351 | 100 | <- | Plus |
arm_3R | 1920226..1920414 | 352..540 | 100 | <- | Plus |
arm_3R | 1920533..1920742 | 541..750 | 100 | <- | Plus |
arm_3R | 1926432..1926481 | 751..802 | 92 | | Plus |
BS04009.5prime Sequence
807 bp (749 high quality bases) assembled on 2005-12-01
> BS04009.5prime
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCATAAAAGCTTT
CTAGACC
BS04009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10287-PA | 777 | Gasp-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..913 | 17..794 | 3890 | 100 | Plus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 17..688 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 669..457 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 6094811..6095021 | 269..59 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 6094504..6094693 | 458..269 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6093550..6093675 | 794..669 | 630 | 100 | Minus |
3R | 32079331 | 3R | 6100710..6100752 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:12:10 has no hits.
BS04009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:44 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:59 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10287-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:33:11 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:35 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 8..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:35 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6094811..6095020 | 60..269 | 100 | <- | Minus |
3R | 6100710..6100759 | 8..59 | 92 | | Minus |
3R | 6093550..6093674 | 670..794 | 100 | <- | Minus |
3R | 6094227..6094437 | 459..669 | 100 | <- | Minus |
3R | 6094504..6094692 | 270..458 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:33:11 Download gff for
BS04009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919272..1919396 | 670..794 | 100 | <- | Minus |
arm_3R | 1919949..1920159 | 459..669 | 100 | <- | Minus |
arm_3R | 1920226..1920414 | 270..458 | 100 | <- | Minus |
arm_3R | 1920533..1920742 | 60..269 | 100 | <- | Minus |
arm_3R | 1926432..1926481 | 8..59 | 92 | | Minus |
BS04009.complete Sequence
809 bp (809 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634829
> BS04009.complete
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCATAAAAGCTTT
CTAGACCAT
BS04009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 777 | CG10287-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Gasp-RB | 708 | CG10287-PB | 1..672 | 17..688 | 3315 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..913 | 17..794 | 3890 | 100 | Plus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 17..688 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 669..457 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 6094811..6095021 | 269..59 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 6094504..6094693 | 458..269 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6093550..6093675 | 794..669 | 630 | 100 | Minus |
3R | 32079331 | 3R | 6100710..6100752 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:04 has no hits.
BS04009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:52 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:58 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:52 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 136..910 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:52 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..913 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:05 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 136..910 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:05 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6100710..6100752 | 17..59 | 100 | | Minus |
3R | 6093553..6093674 | 670..791 | 100 | <- | Minus |
3R | 6094227..6094437 | 459..669 | 100 | <- | Minus |
3R | 6094504..6094692 | 270..458 | 100 | <- | Minus |
3R | 6094811..6095020 | 60..269 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:52 Download gff for
BS04009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919275..1919396 | 670..791 | 100 | <- | Minus |
arm_3R | 1919949..1920159 | 459..669 | 100 | <- | Minus |
arm_3R | 1920226..1920414 | 270..458 | 100 | <- | Minus |
arm_3R | 1920533..1920742 | 60..269 | 100 | <- | Minus |
arm_3R | 1926432..1926474 | 17..59 | 100 | | Minus |
BS04009.pep Sequence
Translation from 16 to 792
> BS04009.pep
MKKFLVVFVALFGAAVAQSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELK
TCGNGLAFDATDSKYLTENCDYLHNVDCGDRTELEPPITTPHCSRLYGIF
PDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMWADQVPECKNEEVA
NGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKI
GDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPK
TKAASSSS*
BS04009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-PA | 258 | CG10287-PA | 1..258 | 1..258 | 1451 | 100 | Plus |
Gasp-PB | 235 | CG10287-PB | 1..232 | 1..232 | 1317 | 98.3 | Plus |
obst-A-PB | 237 | CG17052-PB | 1..235 | 1..228 | 429 | 37 | Plus |
obst-A-PA | 237 | CG17052-PA | 1..235 | 1..228 | 429 | 37 | Plus |
obst-B-PA | 337 | CG4778-PA | 85..284 | 22..224 | 351 | 36.1 | Plus |