Clone BS04009 Report

Search the DGRC for BS04009

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptGasp-RA
Protein status:BS04009.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04009.3prime Sequence

807 bp (806 high quality bases) assembled on 2005-12-01

> BS04009.3prime
ATGGTCTAGAAAGCTTTTATGAGGAGGAGGAGGCAGCTTTGGTTTTTGGC
GCGCCCTTAGTGCGACCTTCACTGTTCAGTCCAGCTAGAAGTTCGCTCTT
GCGGATGCTCTTCAAATCCAGATCGCCGTAGTAGTCCTCACACCCGGGAA
CATCCTCGGGATCCTCGCAGTTGCCAGTGCCATCACTGTCGCCAATCTTG
AACACTGTGCCGATGGGGCATCCGTACTCGCGTGCCACACCCTCCAGGCA
GATGTAGTACTTGCGGCAGTCCTCGGGATGGGCGTGGCGCGAGAAGGATC
CGGCGTTGGCCAGCTCACCAGCCGCCGGGCAAGAGAATCCGTTGGCCACC
TCTTCGTTCTTGCACTCAGGCACCTGGTCAGCCCACATGCACACGCGAGC
ATCGCGATCGTAAGCCAATCCGGGGGAGCACTGGTATCTGGAGGGCTCGC
CGTTCCAGCAGTTCCAGAACACGTCGCACTTGTTCTCATCGGGGAAGATG
CCGTACAGGCGAGAGCAGTGGGGGGTGGTAATTGGGGGCTCCAGCTCTGT
GCGATCGCCGCAATCCACGTTGTGTAGATAGTCGCAGTTTTCGGTTAGGT
ACTTGGAGTCTGTGGCATCGAAAGCCAGACCGTTTCCACAGGTCTTCAGC
TCGGAAACGCCGTTGTCGCACTTCCAGTACTTGTCGCAGGACGTGTCATG
TGGATAGAATCCAAAGTCATCGGGACACTTAAAGCTACTTTGGGCCACAG
CGGCTCCGAATAATGCCACAAACACCACGAGAAACTTCTTCATGTCGACT
GATAACT

BS04009.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10287-PA 777 Gasp-RA 1..777 793..17 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..913 793..16 3890 100 Minus
Gasp-RB 1683 CG10287-RB 136..807 793..122 3315 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 141..353 1065 100 Plus
3R 32079331 3R 6094811..6095021 541..751 1055 100 Plus
3R 32079331 3R 6094504..6094693 352..541 950 100 Plus
3R 32079331 3R 6093550..6093675 16..141 630 100 Plus
3R 32079331 3R 6100710..6100752 751..793 215 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:28:54 has no hits.

BS04009.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:43 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:58 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10287-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:19 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 16..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:41 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 16..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:41 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6093550..6093674 16..140 100 <- Plus
3R 6094227..6094437 141..351 100 <- Plus
3R 6094504..6094692 352..540 100 <- Plus
3R 6094811..6095020 541..750 100 <- Plus
3R 6100710..6100759 751..802 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:19 Download gff for BS04009.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919272..1919396 16..140 100 <- Plus
arm_3R 1919949..1920159 141..351 100 <- Plus
arm_3R 1920226..1920414 352..540 100 <- Plus
arm_3R 1920533..1920742 541..750 100 <- Plus
arm_3R 1926432..1926481 751..802 92   Plus

BS04009.5prime Sequence

807 bp (749 high quality bases) assembled on 2005-12-01

> BS04009.5prime
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCATAAAAGCTTT
CTAGACC

BS04009.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10287-PA 777 Gasp-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..913 17..794 3890 100 Plus
Gasp-RB 1683 CG10287-RB 136..807 17..688 3315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 669..457 1065 100 Minus
3R 32079331 3R 6094811..6095021 269..59 1055 100 Minus
3R 32079331 3R 6094504..6094693 458..269 950 100 Minus
3R 32079331 3R 6093550..6093675 794..669 630 100 Minus
3R 32079331 3R 6100710..6100752 59..17 215 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:12:10 has no hits.

BS04009.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:44 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:55:59 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10287-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:33:11 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 8..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:35 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 8..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:35 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6094811..6095020 60..269 100 <- Minus
3R 6100710..6100759 8..59 92   Minus
3R 6093550..6093674 670..794 100 <- Minus
3R 6094227..6094437 459..669 100 <- Minus
3R 6094504..6094692 270..458 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:33:11 Download gff for BS04009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919272..1919396 670..794 100 <- Minus
arm_3R 1919949..1920159 459..669 100 <- Minus
arm_3R 1920226..1920414 270..458 100 <- Minus
arm_3R 1920533..1920742 60..269 100 <- Minus
arm_3R 1926432..1926481 8..59 92   Minus

BS04009.complete Sequence

809 bp (809 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634829

> BS04009.complete
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCATAAAAGCTTT
CTAGACCAT

BS04009.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 777 CG10287-PA 1..777 17..793 3885 100 Plus
Gasp-RB 708 CG10287-PB 1..672 17..688 3315 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..913 17..794 3890 100 Plus
Gasp-RB 1683 CG10287-RB 136..807 17..688 3315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 669..457 1065 100 Minus
3R 32079331 3R 6094811..6095021 269..59 1055 100 Minus
3R 32079331 3R 6094504..6094693 458..269 950 100 Minus
3R 32079331 3R 6093550..6093675 794..669 630 100 Minus
3R 32079331 3R 6100710..6100752 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:04 has no hits.

BS04009.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:52 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:58 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 8..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:52 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 136..910 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:52 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..913 8..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:05 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 136..910 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:05 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6100710..6100752 17..59 100   Minus
3R 6093553..6093674 670..791 100 <- Minus
3R 6094227..6094437 459..669 100 <- Minus
3R 6094504..6094692 270..458 100 <- Minus
3R 6094811..6095020 60..269 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:52 Download gff for BS04009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919275..1919396 670..791 100 <- Minus
arm_3R 1919949..1920159 459..669 100 <- Minus
arm_3R 1920226..1920414 270..458 100 <- Minus
arm_3R 1920533..1920742 60..269 100 <- Minus
arm_3R 1926432..1926474 17..59 100   Minus

BS04009.pep Sequence

Translation from 16 to 792

> BS04009.pep
MKKFLVVFVALFGAAVAQSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELK
TCGNGLAFDATDSKYLTENCDYLHNVDCGDRTELEPPITTPHCSRLYGIF
PDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMWADQVPECKNEEVA
NGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKI
GDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPK
TKAASSSS*

BS04009.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-PA 258 CG10287-PA 1..258 1..258 1451 100 Plus
Gasp-PB 235 CG10287-PB 1..232 1..232 1317 98.3 Plus
obst-A-PB 237 CG17052-PB 1..235 1..228 429 37 Plus
obst-A-PA 237 CG17052-PA 1..235 1..228 429 37 Plus
obst-B-PA 337 CG4778-PA 85..284 22..224 351 36.1 Plus