Clone BS04011 Report

Search the DGRC for BS04011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG6565-RA
Protein status:BS04011.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04011.3prime Sequence

975 bp (793 high quality bases) assembled on 2005-12-01

> BS04011.3prime
ATGGTCTAGAAAGCTTTTAACGACCTGCTTCGGGTTTACTATTGACCTTG
CGCCGGCTCAAACTGCCCAACCAACTGCCGCGTTGCTCATTAGCCGTATA
TTCGTCATTGATAAGCGCGAATCCGTGAAACATGTCCTTCATCTTGATGG
CCCGTGAGCAGGCGTAGTTCTTGGTGGCCACGTACATCTTGGTGAGGAAC
TCGGGCATTTGTTTCTGAGTAACCCAGGACTTAATATTCTGCGGTATGGG
TATGCCCGGATCGTCGAAGTACGTGAGGACAAAGTGGAGGCCTGGCTCAT
GGAAACCGCGAAAGGGCTTGATGACCATCAGGCTCCAATAGTCAGTGACG
CGAACTTTTCCAGACAACGCCGGATAGGTGTTGTGCGTGGCTCCGCGGTT
GCAAATGAATATCAGCTTCTTGTTGTCGTCTTTTATGTAGCGGCGACAAT
AGACGTAGTCGCGATTGGCGAACAGTCGTGGCCACTGCATCTCCCAGTAT
ATCAGATGCGAGTTGCTGCCCGGGACGGGATCCTCGCTGATGAGCTCAAG
TCTTAGGGCCGTGTCGTCCCACTGGCGACGGTAATCCAAATCCGTTTGAA
CGTGGAGGAAGTCGTCCGCTGTGATGTCGTCGAATCGAGCATAAACCTTG
TATGAGTATAAGGAGGAGCGCTCCTGCCGCCGCCAAATGCTGAATTCGTT
TTTGCTAAAGTACGGCTCCCATTTTTGGTCGTCCTGGGCCTGAATGCGTA
CCGTTCCGGCCGGTGCATTGCGCACGTCCAGATCCAACGGTCGCAGACAA
TTGCTGATGCTGGTGTCCGGATCCGTCTCCGCCTCTTTGCTGGTGGACGG
CTGGGATTGGCCTTTTTTGCAGCGCTGGTTGCCCAGCTGACAGTAGCAGT
ATTTCATCTTCTTGCCCTGGCAGCGGTCGCACAGCTGATTGTTGGGCAGG
GCGTTGATAAACTCAATATCCCGGC

BS04011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PA 1278 CG6565-RA 320..1278 975..17 4745 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 647..1605 975..17 4765 99.8 Minus
CG6565-RB 2088 CG6565-RB 805..1763 975..17 4765 99.8 Minus
CG6565-RA 1930 CG6565-RA 647..1605 975..17 4765 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13375209..13375840 648..17 3160 100 Minus
2L 23513712 2L 13374823..13375153 975..645 1625 99.4 Minus
Blast to na_te.dros performed on 2015-02-06 15:24:38 has no hits.

BS04011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:45 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 320..1278 17..975 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:01 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 320..1278 17..975 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:17 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 647..1612 10..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:55 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 647..1612 10..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:55 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13374823..13375151 647..975 99 -> Minus
2L 13375211..13375847 10..646 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:17 Download gff for BS04011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374823..13375151 647..975 99 -> Minus
arm_2L 13375211..13375847 10..646 99   Minus

BS04011.5prime Sequence

865 bp (737 high quality bases) assembled on 2005-11-29

> BS04011.5prime
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGT

BS04011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PA 1278 CG6565-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 327..1176 16..865 4250 100 Plus
CG6565-RB 2088 CG6565-RB 485..1334 16..865 4250 100 Plus
CG6565-RA 1930 CG6565-RA 327..1176 16..865 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13374503..13375153 16..666 3255 100 Plus
2L 23513712 2L 13375209..13375411 663..865 1015 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:59:25 has no hits.

BS04011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:46 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:02 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:14 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 318..1176 7..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:26 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 318..1176 7..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:26 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13374494..13375151 7..664 99 -> Plus
2L 13375211..13375411 665..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:14 Download gff for BS04011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374494..13375151 7..664 99 -> Plus
arm_2L 13375211..13375411 665..865 100   Plus

BS04011.complete Sequence

1310 bp (1310 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634830

> BS04011.complete
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGTCGCCGCTACATAAAAGACGACAACAAGAAGCTGAT
ATTCATTTGCAACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTG
GAAAAGTTCGCGTCACTGACTATTGGAGCCTGATGGTCATCAAGCCCTTT
CGCGGTTTCCATGAGCCAGGCCTCCACTTTGTCCTCACGTACTTCGACGA
TCCGGGCATACCCATACCGCAGAATATTAAGTCCTGGGTTACTCAGAAAC
AAATGCCCGAGTTCCTCACCAAGATGTACGTGGCCACCAAGAACTACGCC
TGCTCACGGGCCATCAAGATGAAGGACATGTTTCACGGATTCGCGCTTAT
CAATGACGAATATACGGCTAATGAGCAACGCGGCAGTTGGTTGGGCAGTT
TGAGCCGGCGCAAGGTCAATAGTAAACCCGAAGCAGGTCGTTAAAAGCTT
TCTAGACCAT

BS04011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 1278 CG6565-PC 1..1278 17..1294 6390 100 Plus
CG6565-RB 1278 CG6565-PB 1..1278 17..1294 6390 100 Plus
CG6565-RA 1278 CG6565-PA 1..1278 17..1294 6390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 327..1605 16..1294 6395 100 Plus
CG6565-RB 2088 CG6565-RB 485..1763 16..1294 6395 100 Plus
CG6565-RA 1930 CG6565-RA 327..1605 16..1294 6395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13374503..13375153 16..666 3255 100 Plus
2L 23513712 2L 13375209..13375840 663..1294 3160 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:20:54 has no hits.

BS04011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:54 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 17..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:31 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 316..1610 7..1301 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:55 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 328..1603 17..1292 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:54 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 316..1610 7..1301 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:33 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 328..1603 17..1292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:33 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13374504..13375151 17..664 100 -> Plus
2L 13375211..13375838 665..1292 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:55 Download gff for BS04011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374504..13375151 17..664 100 -> Plus
arm_2L 13375211..13375838 665..1292 100   Plus

BS04011.pep Sequence

Translation from 16 to 1293

> BS04011.pep
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGR*

BS04011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PC 425 CG6565-PC 1..425 1..425 2297 100 Plus
CG6565-PB 425 CG6565-PB 1..425 1..425 2297 100 Plus
CG6565-PA 425 CG6565-PA 1..425 1..425 2297 100 Plus