Clone Sequence Records
BS04011.3prime Sequence
975 bp (793 high quality bases) assembled on 2005-12-01
> BS04011.3prime
ATGGTCTAGAAAGCTTTTAACGACCTGCTTCGGGTTTACTATTGACCTTG
CGCCGGCTCAAACTGCCCAACCAACTGCCGCGTTGCTCATTAGCCGTATA
TTCGTCATTGATAAGCGCGAATCCGTGAAACATGTCCTTCATCTTGATGG
CCCGTGAGCAGGCGTAGTTCTTGGTGGCCACGTACATCTTGGTGAGGAAC
TCGGGCATTTGTTTCTGAGTAACCCAGGACTTAATATTCTGCGGTATGGG
TATGCCCGGATCGTCGAAGTACGTGAGGACAAAGTGGAGGCCTGGCTCAT
GGAAACCGCGAAAGGGCTTGATGACCATCAGGCTCCAATAGTCAGTGACG
CGAACTTTTCCAGACAACGCCGGATAGGTGTTGTGCGTGGCTCCGCGGTT
GCAAATGAATATCAGCTTCTTGTTGTCGTCTTTTATGTAGCGGCGACAAT
AGACGTAGTCGCGATTGGCGAACAGTCGTGGCCACTGCATCTCCCAGTAT
ATCAGATGCGAGTTGCTGCCCGGGACGGGATCCTCGCTGATGAGCTCAAG
TCTTAGGGCCGTGTCGTCCCACTGGCGACGGTAATCCAAATCCGTTTGAA
CGTGGAGGAAGTCGTCCGCTGTGATGTCGTCGAATCGAGCATAAACCTTG
TATGAGTATAAGGAGGAGCGCTCCTGCCGCCGCCAAATGCTGAATTCGTT
TTTGCTAAAGTACGGCTCCCATTTTTGGTCGTCCTGGGCCTGAATGCGTA
CCGTTCCGGCCGGTGCATTGCGCACGTCCAGATCCAACGGTCGCAGACAA
TTGCTGATGCTGGTGTCCGGATCCGTCTCCGCCTCTTTGCTGGTGGACGG
CTGGGATTGGCCTTTTTTGCAGCGCTGGTTGCCCAGCTGACAGTAGCAGT
ATTTCATCTTCTTGCCCTGGCAGCGGTCGCACAGCTGATTGTTGGGCAGG
GCGTTGATAAACTCAATATCCCGGC
BS04011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PA | 1278 | CG6565-RA | 320..1278 | 975..17 | 4745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 647..1605 | 975..17 | 4765 | 99.8 | Minus |
CG6565-RB | 2088 | CG6565-RB | 805..1763 | 975..17 | 4765 | 99.8 | Minus |
CG6565-RA | 1930 | CG6565-RA | 647..1605 | 975..17 | 4765 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13375209..13375840 | 648..17 | 3160 | 100 | Minus |
2L | 23513712 | 2L | 13374823..13375153 | 975..645 | 1625 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:24:38 has no hits.
BS04011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:45 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 320..1278 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:01 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 320..1278 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:17 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 647..1612 | 10..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:55 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 647..1612 | 10..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:55 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374823..13375151 | 647..975 | 99 | -> | Minus |
2L | 13375211..13375847 | 10..646 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:17 Download gff for
BS04011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374823..13375151 | 647..975 | 99 | -> | Minus |
arm_2L | 13375211..13375847 | 10..646 | 99 | | Minus |
BS04011.5prime Sequence
865 bp (737 high quality bases) assembled on 2005-11-29
> BS04011.5prime
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGT
BS04011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PA | 1278 | CG6565-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 327..1176 | 16..865 | 4250 | 100 | Plus |
CG6565-RB | 2088 | CG6565-RB | 485..1334 | 16..865 | 4250 | 100 | Plus |
CG6565-RA | 1930 | CG6565-RA | 327..1176 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13374503..13375153 | 16..666 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 13375209..13375411 | 663..865 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:59:25 has no hits.
BS04011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:46 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:02 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:14 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 318..1176 | 7..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:26 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 318..1176 | 7..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:26 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374494..13375151 | 7..664 | 99 | -> | Plus |
2L | 13375211..13375411 | 665..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:14 Download gff for
BS04011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374494..13375151 | 7..664 | 99 | -> | Plus |
arm_2L | 13375211..13375411 | 665..865 | 100 | | Plus |
BS04011.complete Sequence
1310 bp (1310 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634830
> BS04011.complete
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGTCGCCGCTACATAAAAGACGACAACAAGAAGCTGAT
ATTCATTTGCAACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTG
GAAAAGTTCGCGTCACTGACTATTGGAGCCTGATGGTCATCAAGCCCTTT
CGCGGTTTCCATGAGCCAGGCCTCCACTTTGTCCTCACGTACTTCGACGA
TCCGGGCATACCCATACCGCAGAATATTAAGTCCTGGGTTACTCAGAAAC
AAATGCCCGAGTTCCTCACCAAGATGTACGTGGCCACCAAGAACTACGCC
TGCTCACGGGCCATCAAGATGAAGGACATGTTTCACGGATTCGCGCTTAT
CAATGACGAATATACGGCTAATGAGCAACGCGGCAGTTGGTTGGGCAGTT
TGAGCCGGCGCAAGGTCAATAGTAAACCCGAAGCAGGTCGTTAAAAGCTT
TCTAGACCAT
BS04011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 1278 | CG6565-PC | 1..1278 | 17..1294 | 6390 | 100 | Plus |
CG6565-RB | 1278 | CG6565-PB | 1..1278 | 17..1294 | 6390 | 100 | Plus |
CG6565-RA | 1278 | CG6565-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 327..1605 | 16..1294 | 6395 | 100 | Plus |
CG6565-RB | 2088 | CG6565-RB | 485..1763 | 16..1294 | 6395 | 100 | Plus |
CG6565-RA | 1930 | CG6565-RA | 327..1605 | 16..1294 | 6395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13374503..13375153 | 16..666 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 13375209..13375840 | 663..1294 | 3160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:20:54 has no hits.
BS04011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:54 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:31 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 316..1610 | 7..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:55 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 328..1603 | 17..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:54 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 316..1610 | 7..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:33 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 328..1603 | 17..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:33 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374504..13375151 | 17..664 | 100 | -> | Plus |
2L | 13375211..13375838 | 665..1292 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:55 Download gff for
BS04011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374504..13375151 | 17..664 | 100 | -> | Plus |
arm_2L | 13375211..13375838 | 665..1292 | 100 | | Plus |
BS04011.pep Sequence
Translation from 16 to 1293
> BS04011.pep
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGR*
BS04011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PC | 425 | CG6565-PC | 1..425 | 1..425 | 2297 | 100 | Plus |
CG6565-PB | 425 | CG6565-PB | 1..425 | 1..425 | 2297 | 100 | Plus |
CG6565-PA | 425 | CG6565-PA | 1..425 | 1..425 | 2297 | 100 | Plus |