Clone Sequence Records
BS04015.complete Sequence
2255 bp assembled on 2009-12-07
GenBank Submission: KX794446
> BS04015.complete
GAAGTTATCAGTCGACATGGCTGAAACCAAAGCCAATCCCTTCGACATGG
ACAGCTCCAGCTTCGATGCGGAAAAGTATCTGGAAAGGTTGCTCAAGGAT
TGCTCCTTAAAGCAAATAATGGATACGGAGGCGGCGGTGGTCAAGGACAC
ACAGACATTGCACTCTGATATGCAGACGCTGGTCTACGAGAATTACAACA
AATTCATCTCCGCCACGGATACAATTCGCCGGATGAAAGATGACTTCAAG
CAGATGGAAACGGATGTGAACCTACTGATGACCAAGATGCAATCCATAAC
GACTTTTAGTGAGCAAATAACCGGAACGCTGCAGGGCACCAGATCGCAAC
TATGTCGCCTGTCCGAGAAACACTCGCTCCTCAAAAGGCTGCAGTTTCTC
TCAACTCTGCCAGCTAAACTGAAGTCCCTCATCGAGGAACAGAACTACGC
ACAAGCTGTCCAGGACTACCTGCATGCCCAGAAGGTGTTCGCCCAGTACG
GTCGACAGCCGTCCTTCGATGGAATCCAGCGAGATTGCGACGCCATCATG
GCAGATCTCAAGGAGCAATTGCGAAGTGACTTTCAAAGGGCTGGGAACAC
GGCCCAATCCTTGACGGAAATTGGAGAGCTACTCCTGCAGCTGGACGAAA
AGACTTCGGATCTGGCAAGCGAAATGCTGACTTGCGCTGGCAAACGACTG
CACGAGCAAATCGTCATGCTGCAGGATCAAACAGAGCGTGATATGCTGGA
GTTTGTGGACATGGGCATCGATGGTTTCCTCAACGATCTGGCACTGGTAG
TGACTTCCTACTTTGACATGTTTGTGGCCAAGCACTACGAGCATGAGCGC
GATGACTTTCAGGAGAACGCCCTGCAGGAGCTAAATGTCTTCCTCAATCA
GAACATCGAAAAGTATCTGACACTCGTCCAGGATCGTGTTGAGTCCGACA
TTGGCTACGGCGATACCCAGGTAATGCTACGCGCTCTGGATCGACTTCAT
CGGCGCCTTCAGGCCATGCGAAATATCTGCCGCGGCTTGGAGGTCCAACG
CAACACAGTATCTATCATTATTTCGGCTGCCCACCAACTATGCGATGCCC
ATGCCAAAAACCTCAAAGATCACTTTGCCGACAGTTTGAGTGCGGTTCGT
CTGTCGCTGGTTTCTGCCAAGAGCGATGCAGCTGCTGGTCTCAATCTCGG
TGATCTGATAAGCAACCTTTATGTGTCCATGGTGGAGAAAATAAAGGGTG
TACTGCAGGACTTGCTTATATTCCTGCGCACCGACTGGTCGTTTAACATC
AAGGCGGAACACAAGGGCGCCCTGTGCGTAGAGGGCATTCGGGAGAACCT
ACTCATTGGCTTCCTACGTCATATTGCCAAGGTGATGTGTGGTTTCGGAG
ATGCCTCCAGCTCCAGTCCACCCAATCTACTGCTGGTGCTGTCGAAAACG
TGTCTGGAACTCGAGCAACAGGGCGTTCACATACTGATTGCTCTGGTTGA
TGACCTGTACGAAATCGACTCGGAGAACAGTGCAACGCTTACCCACGAAA
CTGAGATATGTGCTGAAATGCGGGAGACGGCACAGTCACTATTGGACGCC
TATGTGCGGCTGCAGGGCACCAATATCTCGCAAATGTTACGCAAGAGCGT
GGAAACAAGGGATTGGCTTAACTGCCTGGAACCACGATCCGTTCGTGCGG
TGATGAAGCGTGTGGTGGAGGAACTCGGCAGCATCGAGACGGTGGTGGCC
AGTCTGTACGAGGCAAACACTAATGCAACGTCAGGATTCCGCACCACAGC
GAGCAGTGACTCTAGCCGAAAAACATATTTCAGTAACTTTGCTTCCACCT
CAAAGCCACAGTATCGTTCCAATTGGTCAAACTACACGCCTTCGCAGCTG
GAATCCAGCTATGTGTCCAACATACATCGCTTGTTTTCGGAGCGAGTGGA
AATCTTTACTTCAGTAGAGTTCACCAAGGCCTCAATTATAATGGGAATTA
TTAAAATTGGTCTAAAAACCCTTTTGGAATGCGTGAGGCTGAGAACTTTT
AGCAAATTCGGACTTCAGCAGATTCAGGTGGATGCTCATTATCTGCAAAT
GAACCTATGGCGATTTGTAAGCGATGAAAATCTGGTGAACTTCCTGCTGG
ACGAGATTCTTGGCTCAGCTGTGCAAAGGTGCTTGGAGTCCGTTTTAATG
GAGCCCAATGCTGTGGAAATTATTTGTGAACGGGGTTAGAAGCTTTCTAG
ACCAT
BS04015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2223 | CG15087-PA | 1..2223 | 17..2239 | 11115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 91..2313 | 17..2239 | 11115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18709867..18710621 | 849..95 | 3775 | 100 | Minus |
| 2R | 25286936 | 2R | 18709170..18709807 | 1486..849 | 3190 | 100 | Minus |
| 2R | 25286936 | 2R | 18708587..18709118 | 2017..1486 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 18708422..18708534 | 2130..2018 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 18708257..18708365 | 2239..2131 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 18710694..18710775 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:43 has no hits.
BS04015.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:51 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 86..2308 | 17..2239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:21 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..2313 | 17..2239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:05 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 86..2308 | 17..2239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:49 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..2313 | 17..2239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:49 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18708257..18708365 | 2131..2239 | 100 | <- | Minus |
| 2R | 18708422..18708534 | 2018..2130 | 100 | <- | Minus |
| 2R | 18708587..18709117 | 1487..2017 | 100 | <- | Minus |
| 2R | 18709170..18709806 | 850..1486 | 100 | <- | Minus |
| 2R | 18709867..18710618 | 98..849 | 100 | <- | Minus |
| 2R | 18710695..18710775 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:21 Download gff for
BS04015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14595762..14595870 | 2131..2239 | 100 | <- | Minus |
| arm_2R | 14595927..14596039 | 2018..2130 | 100 | <- | Minus |
| arm_2R | 14596092..14596622 | 1487..2017 | 100 | <- | Minus |
| arm_2R | 14596675..14597311 | 850..1486 | 100 | <- | Minus |
| arm_2R | 14597372..14598123 | 98..849 | 100 | <- | Minus |
| arm_2R | 14598200..14598280 | 17..97 | 100 | | Minus |
BS04015.3prime Sequence
830 bp (829 high quality bases) assembled on 2005-12-01
> BS04015.3prime
ATGGTCTAGAAAGCTTCTAACCCCGTTCACAAATAATTTCCACAGCATTG
GGCTCCATTAAAACGGACTCCAAGCACCTTTGCACAGCTGAGCCAAGAAT
CTCGTCCAGCAGGAAGTTCACCAGATTTTCATCGCTTACAAATCGCCATA
GGTTCATTTGCAGATAATGAGCATCCACCTGAATCTGCTGAAGTCCGAAT
TTGCTAAAAGTTCTCAGCCTCACGCATTCCAAAAGGGTTTTTAGACCAAT
TTTAATAATTCCCATTATAATTGAGGCCTTGGTGAACTCTACTGAAGTAA
AGATTTCCACTCGCTCCGAAAACAAGCGATGTATGTTGGACACATAGCTG
GATTCCAGCTGCGAAGGCGTGTAGTTTGACCAATTGGAACGATACTGTGG
CTTTGAGGTGGAAGCAAAGTTACTGAAATATGTTTTTCGGCTAGAGTCAC
TGCTCGCTGTGGTGCGGAATCCTGACGTTGCATTAGTGTTTGCCTCGTAC
AGACTGGCCACCACCGTCTCGATGCTGCCGAGTTCCTCCACCACACGCTT
CATCACCGCACGAACGGATCGTGGTTCCAGGCAGTTAAGCCAATCCCTTG
TTTCCACGCTCTTGCGTAACATTTGCGAGATATTGGTGCCCTGCAGCCGC
ACATAGGCGTCCAATAGTGACTGTGCCGTCTCCCGCATTTCAGCACATAT
CTCAGTTTCGTGGGTAAGCGTTGCACTGTTCTCCGAGTCGATTTCGTACA
GGTCATCAACCAGAGCAATCAGTATGTGAACGCCCTGTTGCTCGAGTTCC
AGACACGTTTTCGACAGCACCAGCAGTAGA
BS04015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 2223 | CG15087-RA | 1410..2223 | 830..17 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 1500..2313 | 830..17 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18708587..18709118 | 239..770 | 2660 | 100 | Plus |
| 2R | 25286936 | 2R | 18708422..18708534 | 126..238 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 18708257..18708365 | 17..125 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 18709170..18709230 | 770..830 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:44:33 has no hits.
BS04015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:51 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1411..2223 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:09 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1411..2223 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:33 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 1501..2318 | 10..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:21 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 1501..2318 | 10..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:21 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18708422..18708534 | 126..238 | 100 | <- | Plus |
| 2R | 18708252..18708365 | 10..125 | 97 | <- | Plus |
| 2R | 18708587..18709117 | 239..769 | 100 | <- | Plus |
| 2R | 18709170..18709229 | 770..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:33 Download gff for
BS04015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14595757..14595870 | 10..125 | 97 | <- | Plus |
| arm_2R | 14595927..14596039 | 126..238 | 100 | <- | Plus |
| arm_2R | 14596092..14596622 | 239..769 | 100 | <- | Plus |
| arm_2R | 14596675..14596734 | 770..829 | 100 | | Plus |
BS04015.5prime Sequence
860 bp (825 high quality bases) assembled on 2005-12-01
> BS04015.5prime
GAAGTTATCAGTCGACATGGCTGAAACCAAAGCCAATCCCTTCGACATGG
ACAGCTCCAGCTTCGATGCGGAAAAGTATCTGGAAAGGTTGCTCAAGGAT
TGCTCCTTAAAGCAAATAATGGATACGGAGGCGGCGGTGGTCAAGGACAC
ACAGACATTGCACTCTGATATGCAGACGCTGGTCTACGAGAATTACAACA
AATTCATCTCCGCCACGGATACAATTCGCCGGATGAAAGATGACTTCAAG
CAGATGGAAACGGATGTGAACCTACTGATGACCAAGATGCAATCCATAAC
GACTTTTAGTGAGCAAATAACCGGAACGCTGCAGGGCACCAGATCGCAAC
TATGTCGCCTGTCCGAGAAACACTCGCTCCTCAAAAGGCTGCAGTTTCTC
TCAACTCTGCCAGCTAAACTGAAGTCCCTCATCGAGGAACAGAACTACGC
ACAAGCTGTCCAGGACTACCTGCATGCCCAGAAGGTGTTCGCCCAGTACG
GTCGACAGCCGTCCTTCGATGGAATCCAGCGAGATTGCGACGCCATCATG
GCAGATCTCAAGGAGCAATTGCGAAGTGACTTTCAAAGGGCTGGGAACAC
GGCCCAATCCTTGACGGAAATTGGAGAGCTACTCCTGCAGCTGGACGAAA
AGACTTCGGATCTGGCAAGCGAAATGCTGACTTGCGCTGGCAAACGACTG
CACGAGCAAATCGTCATGCTGCAGGATCAAACAGAGCGTGATATGCTGGA
GTTTGTGGACATGGGCATCGATGGTTTCCTCAACGATCTGGCACTGGTAG
TGACTTCCTACTTTGACATGTTTGTGGCCAAGCACTACGAGCATGAGCGC
GATGACTTTC
BS04015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 2223 | CG15087-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 91..934 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18709867..18710621 | 849..95 | 3775 | 100 | Minus |
| 2R | 25286936 | 2R | 18710694..18710775 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:11:38 has no hits.
BS04015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:37:52 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:11 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:33:08 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..934 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:19 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..934 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:19 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18709860..18710618 | 98..858 | 99 | <- | Minus |
| 2R | 18710695..18710775 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:33:08 Download gff for
BS04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14597365..14598123 | 98..858 | 99 | <- | Minus |
| arm_2R | 14598200..14598280 | 17..97 | 100 | | Minus |
BS04015.pep Sequence
Translation from 16 to 2238
> BS04015.pep
MAETKANPFDMDSSSFDAEKYLERLLKDCSLKQIMDTEAAVVKDTQTLHS
DMQTLVYENYNKFISATDTIRRMKDDFKQMETDVNLLMTKMQSITTFSEQ
ITGTLQGTRSQLCRLSEKHSLLKRLQFLSTLPAKLKSLIEEQNYAQAVQD
YLHAQKVFAQYGRQPSFDGIQRDCDAIMADLKEQLRSDFQRAGNTAQSLT
EIGELLLQLDEKTSDLASEMLTCAGKRLHEQIVMLQDQTERDMLEFVDMG
IDGFLNDLALVVTSYFDMFVAKHYEHERDDFQENALQELNVFLNQNIEKY
LTLVQDRVESDIGYGDTQVMLRALDRLHRRLQAMRNICRGLEVQRNTVSI
IISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISN
LYVSMVEKIKGVLQDLLIFLRTDWSFNIKAEHKGALCVEGIRENLLIGFL
RHIAKVMCGFGDASSSSPPNLLLVLSKTCLELEQQGVHILIALVDDLYEI
DSENSATLTHETEICAEMRETAQSLLDAYVRLQGTNISQMLRKSVETRDW
LNCLEPRSVRAVMKRVVEELGSIETVVASLYEANTNATSGFRTTASSDSS
RKTYFSNFASTSKPQYRSNWSNYTPSQLESSYVSNIHRLFSERVEIFTSV
EFTKASIIMGIIKIGLKTLLECVRLRTFSKFGLQQIQVDAHYLQMNLWRF
VSDENLVNFLLDEILGSAVQRCLESVLMEPNAVEIICERG*
BS04015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 740 | CG15087-PA | 1..740 | 1..740 | 3728 | 100 | Plus |
