Clone Sequence Records
BS04019.3prime Sequence
944 bp (855 high quality bases) assembled on 2005-12-01
> BS04019.3prime
ATGGTCTAGAAAGCTTTTAAAATTTCCATATTGTATCATTTGGTTGAGGG
TTGTGGCTGCCCCGAGCATCAGAGAATATTTCATGTTCATTTCTTTTGAA
CTTTGACATTTTTTGGCCTAAGTCTTTCAATTGGTCCAAAAGACTGGTAT
TCCGACATTGCTTAAGAAACGAGTGTGTCATTAATTTTGATGCTGCCCAT
CGAGACAATGGATTTTTATTCAAGCATAGTTCAACAAATTGATGGAAGTT
TTCCGAAAATGATTTGTTTACAATTACATCACGAGCAATTCGTTTATTTG
TGTGCTCCAGGGATAGGGAACCTTGATTTTCCAAAAGGCTGTTTTTATCC
AGTAGCACCTGCAGACTTCCACGCACTTTTTCAATATACATGTATGTTAA
TTCTGTGTCTTTAAAGGGTTGAAACCCGTTTGCCATTTCGCAACAAGTAA
TTCCGATGGAATAAATATCTATTTTTTCAGTGTAACCAGAAAGGTTTTGA
TATAAAACTTCTGGTGCTGTCCAATACAACTCTTTTTCTATTCCAACCGT
TGATCCAAATATAAACGTTTTTTTTTCTCCTTGACTAATAAAACTTTGAC
AGTAACTAAAATTTGATAGAACTGCTTTTCTGGGACTTAAGAGTATGTGC
TTAGCCCTTACTGATCCATGAACATAATGCTCGGAGTGAATATAAGTAAG
TGCTGATAATACATCCTTTAAAATGAGTGCTATTGCAACTTCCGGAAACC
CAGAAGTATACACGTTTTTTAGCAGCACTTCACAATTTCCAAAACACATA
AACTTGTAAGTCAAATAAACATACTGCTTGTACAAAAAACAACTGACGAT
AGTGTTTATATTTCTATGTTGAAGCCGACGAACAGTTAAAACTTCGTTAA
ACAATAGTGTAAGCTTTTCCATTGGCTGATCCCTAGAACTTTTT
BS04019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40293-PA | 1041 | Stlk-RA | 120..1041 | 938..17 | 4585 | 99.8 | Minus |
CG40293-PB | 333 | Stlk-RB | 120..234 | 938..824 | 550 | 99.1 | Minus |
CG40293-PB | 333 | Stlk-RB | 234..333 | 750..651 | 500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stlk-RC | 1584 | CG40293-RC | 170..1098 | 944..17 | 4605 | 99.8 | Minus |
Stlk-RA | 1878 | CG40293-RA | 170..1098 | 944..17 | 4605 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4560356..4560791 | 755..320 | 2165 | 99.8 | Minus |
2R | 25286936 | 2R | 4562843..4563081 | 323..85 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 4546867..4547055 | 938..750 | 930 | 99.5 | Minus |
2R | 25286936 | 2R | 4564434..4564501 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:41:54 has no hits.
BS04019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:10 Download gff for
BS04019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40293-PA | 113..1041 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:19 Download gff for
BS04019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 170..1109 | 7..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:49 Download gff for
BS04019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 170..1109 | 7..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:49 Download gff for
BS04019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4562845..4563081 | 85..321 | 100 | -> | Minus |
2R | 4564434..4564512 | 7..84 | 95 | | Minus |
2R | 4546860..4547054 | 751..944 | 98 | -> | Minus |
2R | 4560361..4560789 | 322..750 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:19 Download gff for
BS04019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 434365..434559 | 751..944 | 98 | -> | Minus |
arm_2R | 447866..448294 | 322..750 | 100 | -> | Minus |
arm_2R | 450350..450586 | 85..321 | 100 | -> | Minus |
arm_2R | 451939..452017 | 7..84 | 95 | | Minus |
BS04019.5prime Sequence
918 bp (781 high quality bases) assembled on 2005-11-29
> BS04019.5prime
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAAATCCATTGTCCCGATGGGCAGCATCAAAATTAATGACACA
CTCGTTTCTTAAGCAATG
BS04019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40293-PA | 1041 | Stlk-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
CG40293-PB | 333 | Stlk-RB | 1..234 | 17..250 | 1170 | 100 | Plus |
CG40293-PB | 333 | Stlk-RB | 234..333 | 324..423 | 500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stlk-RC | 1584 | CG40293-RC | 58..959 | 17..918 | 4495 | 99.9 | Plus |
Stlk-RA | 1878 | CG40293-RA | 58..959 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4560356..4560791 | 319..754 | 2165 | 99.8 | Plus |
2R | 25286936 | 2R | 4546748..4547055 | 17..324 | 1540 | 100 | Plus |
2R | 25286936 | 2R | 4562843..4563010 | 751..918 | 825 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:17:18 has no hits.
BS04019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:11 Download gff for
BS04019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40293-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:39 Download gff for
BS04019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 58..959 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:08 Download gff for
BS04019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 58..959 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:08 Download gff for
BS04019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4546748..4547054 | 17..323 | 100 | -> | Plus |
2R | 4560361..4560789 | 324..752 | 100 | -> | Plus |
2R | 4562845..4563010 | 753..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:39 Download gff for
BS04019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 434253..434559 | 17..323 | 100 | -> | Plus |
arm_2R | 447866..448294 | 324..752 | 100 | -> | Plus |
arm_2R | 450350..450515 | 753..918 | 99 | | Plus |
BS04019.complete Sequence
1073 bp (1073 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634831
> BS04019.complete
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAAATCCATTGTCTCGATGGGCAGCATCAAAATTAATGACACA
CTCGTTTCTTAAGCAATGTCGGAATACCAGTCTTTTGGACCAATTGAAAG
ACTTAGGCCAAAAAATGTCAAAGTTCAAAAGAAATGAACATGAAATATTC
TCTGATGCTCGGGGCAGCCACAACCCTCAACCAAATGATACAATATGGAA
ATTTTAAAAGCTTTCTAGACCAT
BS04019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stlk-RC | 1041 | CG40293-PC | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Stlk-RA | 1041 | CG40293-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stlk-RC | 1584 | CG40293-RC | 58..1098 | 17..1057 | 5205 | 100 | Plus |
Stlk-RA | 1878 | CG40293-RA | 58..1098 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4560356..4560791 | 319..754 | 2165 | 99.8 | Plus |
2R | 25286936 | 2R | 4546748..4547055 | 17..324 | 1540 | 100 | Plus |
2R | 25286936 | 2R | 4562843..4563081 | 751..989 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 4564434..4564501 | 990..1057 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:20:18 has no hits.
BS04019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:55 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:14 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 29..1067 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:57 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 58..1096 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:55 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 29..1080 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:50 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stlk-RA | 58..1096 | 17..1055 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:50 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4546748..4547054 | 17..323 | 100 | -> | Plus |
2R | 4560361..4560789 | 324..752 | 100 | -> | Plus |
2R | 4562845..4563081 | 753..989 | 100 | -> | Plus |
2R | 4564434..4564499 | 990..1055 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:57 Download gff for
BS04019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 434253..434559 | 17..323 | 100 | -> | Plus |
arm_2R | 447866..448294 | 324..752 | 100 | -> | Plus |
arm_2R | 450350..450586 | 753..989 | 100 | -> | Plus |
arm_2R | 451939..452004 | 990..1055 | 100 | | Plus |
BS04019.pep Sequence
Translation from 16 to 1056
> BS04019.pep
MMCSNNISDYKLLEILKNGMIGTVYKAEDINNKCLAVKKVSMDQPMEKLT
LLFNEVLTVRRLQHRNINTIVSCFLYKQYVYLTYKFMCFGNCEVLLKNVY
TSGFPEVAIALILKDVLSALTYIHSEHYVHGSVRAKHILLSPRKAVLSNF
SYCQSFISQGEKKTFIFGSTVGIEKELYWTAPEVLYQNLSGYTEKIDIYS
IGITCCEMANGFQPFKDTELTYMYIEKVRGSLQVLLDKNSLLENQGSLSL
EHTNKRIARDVIVNKSFSENFHQFVELCLNKNPLSRWAASKLMTHSFLKQ
CRNTSLLDQLKDLGQKMSKFKRNEHEIFSDARGSHNPQPNDTIWKF*
BS04019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stlk-PC | 346 | CG40293-PC | 1..346 | 1..346 | 1810 | 100 | Plus |
Stlk-PA | 346 | CG40293-PA | 1..346 | 1..346 | 1810 | 100 | Plus |
GckIII-PA | 642 | CG5169-PA | 17..295 | 14..330 | 271 | 26.6 | Plus |
fray-PG | 552 | CG7693-PG | 33..323 | 5..309 | 249 | 26.4 | Plus |
Tao-PI | 1038 | CG14217-PI | 30..291 | 13..310 | 249 | 28.1 | Plus |