Clone BS04019 Report

Search the DGRC for BS04019

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptStlk-RA
Protein status:BS04019.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04019.3prime Sequence

944 bp (855 high quality bases) assembled on 2005-12-01

> BS04019.3prime
ATGGTCTAGAAAGCTTTTAAAATTTCCATATTGTATCATTTGGTTGAGGG
TTGTGGCTGCCCCGAGCATCAGAGAATATTTCATGTTCATTTCTTTTGAA
CTTTGACATTTTTTGGCCTAAGTCTTTCAATTGGTCCAAAAGACTGGTAT
TCCGACATTGCTTAAGAAACGAGTGTGTCATTAATTTTGATGCTGCCCAT
CGAGACAATGGATTTTTATTCAAGCATAGTTCAACAAATTGATGGAAGTT
TTCCGAAAATGATTTGTTTACAATTACATCACGAGCAATTCGTTTATTTG
TGTGCTCCAGGGATAGGGAACCTTGATTTTCCAAAAGGCTGTTTTTATCC
AGTAGCACCTGCAGACTTCCACGCACTTTTTCAATATACATGTATGTTAA
TTCTGTGTCTTTAAAGGGTTGAAACCCGTTTGCCATTTCGCAACAAGTAA
TTCCGATGGAATAAATATCTATTTTTTCAGTGTAACCAGAAAGGTTTTGA
TATAAAACTTCTGGTGCTGTCCAATACAACTCTTTTTCTATTCCAACCGT
TGATCCAAATATAAACGTTTTTTTTTCTCCTTGACTAATAAAACTTTGAC
AGTAACTAAAATTTGATAGAACTGCTTTTCTGGGACTTAAGAGTATGTGC
TTAGCCCTTACTGATCCATGAACATAATGCTCGGAGTGAATATAAGTAAG
TGCTGATAATACATCCTTTAAAATGAGTGCTATTGCAACTTCCGGAAACC
CAGAAGTATACACGTTTTTTAGCAGCACTTCACAATTTCCAAAACACATA
AACTTGTAAGTCAAATAAACATACTGCTTGTACAAAAAACAACTGACGAT
AGTGTTTATATTTCTATGTTGAAGCCGACGAACAGTTAAAACTTCGTTAA
ACAATAGTGTAAGCTTTTCCATTGGCTGATCCCTAGAACTTTTT

BS04019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG40293-PA 1041 Stlk-RA 120..1041 938..17 4585 99.8 Minus
CG40293-PB 333 Stlk-RB 120..234 938..824 550 99.1 Minus
CG40293-PB 333 Stlk-RB 234..333 750..651 500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 170..1098 944..17 4605 99.8 Minus
Stlk-RA 1878 CG40293-RA 170..1098 944..17 4605 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 755..320 2165 99.8 Minus
2R 25286936 2R 4562843..4563081 323..85 1195 100 Minus
2R 25286936 2R 4546867..4547055 938..750 930 99.5 Minus
2R 25286936 2R 4564434..4564501 84..17 340 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:41:54 has no hits.

BS04019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:10 Download gff for BS04019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40293-PA 113..1041 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:19 Download gff for BS04019.3prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 170..1109 7..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:49 Download gff for BS04019.3prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 170..1109 7..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:49 Download gff for BS04019.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4562845..4563081 85..321 100 -> Minus
2R 4564434..4564512 7..84 95   Minus
2R 4546860..4547054 751..944 98 -> Minus
2R 4560361..4560789 322..750 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:19 Download gff for BS04019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 434365..434559 751..944 98 -> Minus
arm_2R 447866..448294 322..750 100 -> Minus
arm_2R 450350..450586 85..321 100 -> Minus
arm_2R 451939..452017 7..84 95   Minus

BS04019.5prime Sequence

918 bp (781 high quality bases) assembled on 2005-11-29

> BS04019.5prime
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAAATCCATTGTCCCGATGGGCAGCATCAAAATTAATGACACA
CTCGTTTCTTAAGCAATG

BS04019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG40293-PA 1041 Stlk-RA 1..902 17..918 4485 99.8 Plus
CG40293-PB 333 Stlk-RB 1..234 17..250 1170 100 Plus
CG40293-PB 333 Stlk-RB 234..333 324..423 500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 58..959 17..918 4495 99.9 Plus
Stlk-RA 1878 CG40293-RA 58..959 17..918 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 319..754 2165 99.8 Plus
2R 25286936 2R 4546748..4547055 17..324 1540 100 Plus
2R 25286936 2R 4562843..4563010 751..918 825 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:17:18 has no hits.

BS04019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:11 Download gff for BS04019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40293-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:39 Download gff for BS04019.5prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..959 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:08 Download gff for BS04019.5prime
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..959 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:08 Download gff for BS04019.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4546748..4547054 17..323 100 -> Plus
2R 4560361..4560789 324..752 100 -> Plus
2R 4562845..4563010 753..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:39 Download gff for BS04019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 434253..434559 17..323 100 -> Plus
arm_2R 447866..448294 324..752 100 -> Plus
arm_2R 450350..450515 753..918 99   Plus

BS04019.complete Sequence

1073 bp (1073 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634831

> BS04019.complete
GAAGTTATCAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAAC
TGCTAGAAATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAA
GATATAAACAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCC
AATGGAAAAGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGC
TTCAACATAGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAG
TATGTTTATTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCT
GCTAAAAAACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCA
TTTTAAAGGATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTAT
GTTCATGGATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGC
AGTTCTATCAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAA
AAAAAACGTTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTAT
TGGACAGCACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAA
AATAGATATTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGT
TTCAACCCTTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTG
CGTGGAAGTCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCA
AGGTTCCCTATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAA
TTGTAAACAAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGC
TTGAATAAAAATCCATTGTCTCGATGGGCAGCATCAAAATTAATGACACA
CTCGTTTCTTAAGCAATGTCGGAATACCAGTCTTTTGGACCAATTGAAAG
ACTTAGGCCAAAAAATGTCAAAGTTCAAAAGAAATGAACATGAAATATTC
TCTGATGCTCGGGGCAGCCACAACCCTCAACCAAATGATACAATATGGAA
ATTTTAAAAGCTTTCTAGACCAT

BS04019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1041 CG40293-PC 1..1041 17..1057 5205 100 Plus
Stlk-RA 1041 CG40293-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-RC 1584 CG40293-RC 58..1098 17..1057 5205 100 Plus
Stlk-RA 1878 CG40293-RA 58..1098 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4560356..4560791 319..754 2165 99.8 Plus
2R 25286936 2R 4546748..4547055 17..324 1540 100 Plus
2R 25286936 2R 4562843..4563081 751..989 1195 100 Plus
2R 25286936 2R 4564434..4564501 990..1057 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:20:18 has no hits.

BS04019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:55 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:14 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 29..1067 17..1055 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:57 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..1096 17..1055 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:55 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 29..1080 17..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:50 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
Stlk-RA 58..1096 17..1055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:50 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4546748..4547054 17..323 100 -> Plus
2R 4560361..4560789 324..752 100 -> Plus
2R 4562845..4563081 753..989 100 -> Plus
2R 4564434..4564499 990..1055 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:57 Download gff for BS04019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 434253..434559 17..323 100 -> Plus
arm_2R 447866..448294 324..752 100 -> Plus
arm_2R 450350..450586 753..989 100 -> Plus
arm_2R 451939..452004 990..1055 100   Plus

BS04019.pep Sequence

Translation from 16 to 1056

> BS04019.pep
MMCSNNISDYKLLEILKNGMIGTVYKAEDINNKCLAVKKVSMDQPMEKLT
LLFNEVLTVRRLQHRNINTIVSCFLYKQYVYLTYKFMCFGNCEVLLKNVY
TSGFPEVAIALILKDVLSALTYIHSEHYVHGSVRAKHILLSPRKAVLSNF
SYCQSFISQGEKKTFIFGSTVGIEKELYWTAPEVLYQNLSGYTEKIDIYS
IGITCCEMANGFQPFKDTELTYMYIEKVRGSLQVLLDKNSLLENQGSLSL
EHTNKRIARDVIVNKSFSENFHQFVELCLNKNPLSRWAASKLMTHSFLKQ
CRNTSLLDQLKDLGQKMSKFKRNEHEIFSDARGSHNPQPNDTIWKF*

BS04019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Stlk-PC 346 CG40293-PC 1..346 1..346 1810 100 Plus
Stlk-PA 346 CG40293-PA 1..346 1..346 1810 100 Plus
GckIII-PA 642 CG5169-PA 17..295 14..330 271 26.6 Plus
fray-PG 552 CG7693-PG 33..323 5..309 249 26.4 Plus
Tao-PI 1038 CG14217-PI 30..291 13..310 249 28.1 Plus