Clone Sequence Records
BS04022.3prime Sequence
945 bp (858 high quality bases) assembled on 2005-12-01
> BS04022.3prime
ATGGTCTAGAAAGCTTTCAGATAATCTTCACTTTGACTTTGTGATACGCG
TTGGCCAAGACGCCACGCAGATTCCAGATGTGCTCGAATTTCTCCGGCTG
CACATTGTACGCCGAGTCAACGGCCTTGGCCCAAATCTCCACGTCGCCGG
CTCTCCTTTGGGCCTCGGAAACGGGCAGACGTGCGGTCCACAGGGACCAG
CCGTAGTGTCTGCCATCGGGCATCTCCTCCTGCTCCAGTTCGGCCACGTG
CCAGCTAACACCCTCATCGTTGGTTAGGTCCACCCTTACGATTTTCCTGC
CGCCGCCGCTCCACGCGTATCCCCTAACCGTGATGTGACCCTCGTCGTCG
TCCACTTTCACCCTGGCCCCTGGCTGTGGCGTACAGATGGCCGATGTCAC
CGGCATGGCCTGGATGGCATCCGATTTGCTGAAGTCTACCGTGTCCCAAT
CGGTGCTAGGGCTAAAGCCCTTATAGTCGTTCTGCTGCCAGTGCGAGTCC
GATTCCTTGTCCGCCACCACGATTCGCGTTAGCCACTTCACGTTGCGAGC
GCCCACTGTGCCGGGAACAATTACGCGGATGGGGAAGCCATGGTCTCTGC
TCAGCGGCTCATCGTTCATCTCGTAGGCCAGGATGACATCTCCCCTGGGA
TCGAGCGCCTTGGCGAGTGGTATCGATGCTCCATACGGGTGGGAAGTGGG
ATCCAGGTCGGCACCCTCGAAGATCACGTGCTTGGTCTCATCCGGCTGCA
CGCCCTGCTCTCTTAGAATGTCGCACAGTCGAGCTCCTGACCACTTGGCA
TTGCCCACTGCACCAGCTCCCCATGAAAGACCCTTTACGGCCTTGACTTT
GGTCATCTCAGAGCGTCGATTGCCACCGCACATGATGGCCGCCGTGACCG
AGTGCTTGGGCAGGCCCTTGATCCCGTCCAGAGTGAGGGTCTTGT
BS04022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 1722 | CG7280-RA | 794..1722 | 945..17 | 4620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 1072..2001 | 945..16 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18846503..18847319 | 16..832 | 4085 | 100 | Plus |
| X | 23542271 | X | 18847380..18847495 | 830..945 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:32:40 has no hits.
BS04022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:01 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 794..1722 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:21 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 794..1722 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:29 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1072..2001 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:23 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1072..2001 | 16..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:23 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18847382..18847495 | 832..945 | 99 | | Plus |
| X | 18846503..18847318 | 16..831 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:29 Download gff for
BS04022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18741415..18741528 | 832..945 | 99 | | Plus |
| arm_X | 18740536..18741351 | 16..831 | 100 | <- | Plus |
BS04022.5prime Sequence
909 bp (770 high quality bases) assembled on 2005-12-01
> BS04022.5prime
GAAGTTATCAGTCGACATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGC
TGCGCGGAAGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTG
ACCACCAGTCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCA
ATGGAGTTCTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTT
GGGCAGGTGGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAAC
CATGTGCTGCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGC
AACGGCCCGACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACA
GGGCAGAAGAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTC
ACCTACGGCCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCC
CGGTGGCGATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTT
GGGGCATCTACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAG
GGCTTTCGCATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGA
TGAGCTGGGCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCA
AGCCAGCCTCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTG
GCCGAGCAGTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCT
GCCAGTGCCAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTG
GCGCCAAGGACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAG
CACTCGGTCACGGCGGCCATCATGTGCGGTGGCAATCGACGCTCTGAGAT
GACCAAAGT
BS04022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 1722 | CG7280-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 279..1171 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18847396..18848288 | 909..17 | 4465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:09:23 has no hits.
BS04022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:02 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:22 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:14:50 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1171 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:56 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1171 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:56 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18847396..18848295 | 9..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:14:50 Download gff for
BS04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18741429..18742328 | 9..909 | 99 | | Minus |
BS04022.complete Sequence
1754 bp assembled on 2007-10-17
GenBank Submission: FJ634832
> BS04022.complete
GAAGTTATCAGTCGACATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGC
TGCGCGGAAGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTG
ACCACCAGTCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCA
ATGGAGTTCTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTT
GGGCAGGTGGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAAC
CATGTGCTGCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGC
AACGGCCCGACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACA
GGGCAGAAGAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTC
ACCTACGGCCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCC
CGGTGGCGATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTT
GGGGCATCTACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAG
GGCTTTCGCATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGA
TGAGCTGGGCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCA
AGCCAGCCTCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTG
GCCGAGCAGTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCT
GCCAGTGCCAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTG
GCGCCAAGGACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAG
CACTCGGTCACGGCGGCCATCATGTGCGGTGGCAATCGACGCTCTGAGAT
GACCAAAGTCAAGGCCGTAAAGGGTCTTTCATGGGGAGCTGGTGCAGTGG
GCAATGCCAAGTGGTCAGGAGCTCGACTGTGCGACATTCTAAGAGAGCAG
GGCGTGCAGCCGGATGAGACCAAGCACGTGATCTTCGAGGGTGCCGACCT
GGATCCCACTTCCCACCCGTATGGAGCATCGATACCACTCGCCAAGGCGC
TCGATCCCAGGGGAGATGTCATCCTGGCCTACGAGATGAACGATGAGCCG
CTGAGCAGAGACCATGGCTTCCCCATCCGCGTAATTGTTCCCGGCACAGT
GGGCGCTCGCAACGTGAAGTGGCTAACGCGAATCGTGGTGGCGGACAAGG
AATCGGACTCGCACTGGCAGCAGAACGACTATAAGGGCTTTAGCCCTAGC
ACCGATTGGGACACGGTAGACTTCAGCAAATCGGATGCCATCCAGGCCAT
GCCGGTGACATCGGCCATCTGTACGCCACAGCCAGGGGCCAGGGTGAAAG
TGGACGACGACGAGGGTCACATCACGGTTAGGGGATACGCGTGGAGCGGC
GGCGGCAGGAAAATCGTAAGGGTGGACCTAACCAACGATGAGGGTGTTAG
CTGGCACGTGGCCGAACTGGAGCAGGAGGAGATGCCCGATGGCAGACACT
ACGGCTGGTCCCTGTGGACCGCACGTCTGCCCGTTTCCGAGGCCCAAAGG
AGAGCCGGCGACGTGGAGATTTGGGCCAAGGCCGTTGACTCGGCGTACAA
TGTGCAGCCGGAGAAATTCGAGCACATCTGGAATCTGCGTGGCGTCTTGG
CCAACGCGTATCACAAAGTCAAAGTGAAGATTATCTGAAAGCTTTCTAGA
CCAT
BS04022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 1722 | CG7280-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 279..2001 | 17..1739 | 8615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18847380..18848288 | 925..17 | 4545 | 100 | Minus |
| X | 23542271 | X | 18846503..18847319 | 1739..923 | 4085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:45 has no hits.
BS04022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:36 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1..1722 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:23 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 257..1986 | 9..1739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:59 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 279..1999 | 17..1737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:35 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 264..1984 | 17..1737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:20 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 279..1999 | 17..1737 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:20 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18846505..18847318 | 924..1737 | 100 | <- | Minus |
| X | 18847382..18848288 | 17..923 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:59 Download gff for
BS04022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18740538..18741351 | 924..1737 | 100 | <- | Minus |
| arm_X | 18741415..18742321 | 17..923 | 100 | | Minus |
BS04022.pep Sequence
Translation from 16 to 1737
> BS04022.pep
MRLLRPSWAGLLRGRHHQHQRHHRRLLLTTSRGSNGEREEQQHSQWSSPG
SRSEQLFYAAFWAGGLTLGYHWLTDKKNHVLLEGQKVASEEELEATARLW
HVTNRRELPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKI
LMAAGSAIDPFWGIYQQHNTLEVLELLEGFRIGNLEGLVVTNVDDELGSP
WSQEPQRHALLKPASKRPFNAEPPIGLLAEQFYTPNELFYVRNHLPVPVI
NPEDYELEIEGGAKDKTLTLDGIKALPKHSVTAAIMCGGNRRSEMTKVKA
VKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADLDPTSH
PYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNV
KWLTRIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSA
ICTPQPGARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAE
LEQEEMPDGRHYGWSLWTARLPVSEAQRRAGDVEIWAKAVDSAYNVQPEK
FEHIWNLRGVLANAYHKVKVKII*
BS04022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 573 | CG7280-PA | 1..573 | 1..573 | 3075 | 100 | Plus |
