Clone BS04024 Report

Search the DGRC for BS04024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptZyx-RA
Protein status:BS04024.pep: full length peptide match
Sequenced Size:1727

Clone Sequence Records

BS04024.3prime Sequence

954 bp (903 high quality bases) assembled on 2005-12-01

> BS04024.3prime
ATGGTCTAGAAAGCTTTTAATGTTCTGACGTCATGCGGTTTGTTAAAGCC
TGAACCCTTTTTGCATTGCAGCTTTTACATAGAACATGGTCATCCAGGGG
ATAACATCCGCGGCCCTCAGCTTCAGATGATAGTAAGAGCCCACAGTCCT
CACACTTATAACATTCTAGATGAAAACTTCGATCTAGGGCCACTACTCTG
ATCGTTTCTTCTTGTCCTGGATCTGGCATAATTGGTTGCTTGCAGACACA
ACAGCGAGGGGCAAATTTTTTATGAAAATCTGTTATGCAATAGTTTTGAT
TAGTAGCATCAACTGTAAATAATAGCCCATCTAAGCTTTTTCCGCATACA
ACACATGTAAAACATTGCGGATGATATGGTTTTCCAGTAGCTCTAAGAAT
TCTCTCTAAAATTGGTTCCATGCAAACAGAGCATTTTTCCAGTGTTTGTA
AATAATCATATTCGCAATAGGGTTTGCCGTCTAATGCATAGAAAGGTTTT
CCCTGTAAGTTAATTTGGCAATCTGTACATGTGAAGCAAAATATGTGGTA
TATTTGATCCATTGCTGTACATCCACTACTTTCTCCAAGTACACGTGAAT
TGCATTTGACACACCTACCGTAGTTTTCCAATTCTTGAACCGGTTCGGTG
GGTATTGAAATGTAATTTTTTAGACCTTCCTTATCATTTCTATGGATGCT
GTTCACGTCATAAAATGTAGTTCTAGCATTACCATGTATGTATAGTGTTT
GGTTAGCTTCAATCGAATTCGAAATATTGTATTCATGGGAAATGTTTGGA
TTATTATCATTAACGTATGAATTATGCAGATTATAACTTTCACGAGGCAG
CGTATCTGCAACACAGGGTCGAGGGTTTATAGGTTCATATATTGAATCAT
ATGTAGAAGAGCTCTTGCCTGTGGCATCATGCTGCATCGCATATTGGTTT
GCAT

BS04024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32018-PA 1695 Zyx102EF-RA 758..1695 954..17 4690 100 Minus
CG32018-PB 1758 Zyx102EF-RB 821..1758 954..17 4690 100 Minus
CG32018-PE 1758 Zyx102EF-RE 821..1758 954..17 4690 100 Minus
CG32018-PF 1695 Zyx102EF-RF 758..1695 954..17 4690 100 Minus
CG32018-PG 1572 Zyx102EF-RG 635..1572 954..17 4690 100 Minus
CG32018-PD 1695 Zyx102EF-RD 758..1695 954..17 4690 100 Minus
CG32018-PC 1758 Zyx102EF-RC 821..1758 954..17 4690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RL 2180 CG32018-RL 1167..2105 954..16 4695 100 Minus
Zyx-RH 1958 CG32018-RH 945..1883 954..16 4695 100 Minus
Zyx-RG 1788 CG32018-RG 775..1713 954..16 4695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1057807..1058156 270..619 1750 100 Plus
4 1348131 4 1058207..1058506 616..915 1500 100 Plus
4 1348131 4 1057440..1057574 16..150 675 100 Plus
4 1348131 4 1057632..1057760 148..276 615 98.4 Plus
4 1348131 4 1059101..1059141 914..954 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:52:20 has no hits.

BS04024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:06 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PA 758..1695 17..954 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:27 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PC 821..1758 17..954 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:34:55 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RB 1048..1988 11..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:47 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RG 775..1715 11..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:47 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1058210..1058504 619..913 100 <- Plus
4 1059101..1059141 914..954 100   Plus
4 1057438..1057572 11..148 97 <- Plus
4 1057633..1057753 149..269 100 <- Plus
4 1057807..1058155 270..618 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:34:55 Download gff for BS04024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1078064..1078198 11..148 97 <- Plus
arm_4 1078259..1078379 149..269 100 <- Plus
arm_4 1078433..1078781 270..618 100 <- Plus
arm_4 1078836..1079130 619..913 100 <- Plus
arm_4 1079727..1079767 914..954 100   Plus

BS04024.5prime Sequence

880 bp (749 high quality bases) assembled on 2005-12-01

> BS04024.5prime
GAAGTTATCAGTCGACATGGAGTCTGTGGCCCAGCAACTTAGAGAGCTGT
CGCTTCCAAAAGGTGACACAGGCTCACCGCTTGTATGTATTGGACATGGA
AAAGTTGCGAAGCTAGTCGCCAAGATAAGTAATAATCAAAATGCATCAGT
AAAGAGGAGATTGGATATACCTCCTAAGCCGCCGATAAAATATAATGAAA
TGCCTCAGGTTCCATCAAGCAGACAGGTTTTGTGTTCGCGGGAACCACTA
TATTCACAACCTCTGATTGGAGTCGAGAAAACAATGAGGGGGCATATGCC
TTTTAGAAAATACCTCAGCTCTGAATTCGGAGTTGCTGATACTCAAATAA
ACAGAAAAACAACTTTAGATAATCCGGCAATTTTGGAACAGCAATTAGAA
GCTCTTGCTTACCATAAACTTCAAATGGAAAAAAAGGGTCTTTTGGGAGT
ACAAGCTAAGCCAACACAACCTCTCAACAGCTTTACAAAGCCCCTTTCAA
AGACTTTAAGCAAAAGCTTAATATATTCTAATTTAGGTTCTGTTCGCAAA
GAAATAGAAACATTAGAACTATTAACAGACGAAACTAAGATTTCTGCGAG
TACATATTCAAACGTTAATGAAACTGACAACGAAAAAGATGAGTTACCGC
CACCACCTAGTCCAGAGAGCGCTGTGAGTTCTTCATACAGTGAGCTTCGT
CACGCCACTTTGGAATTCAACAAACCAATTGATTATTTACAAAATAACCA
GACAACGAATCCTTTACAAATATATGCAAACCAATATGCGATGCAGCATG
ATGCCACAGGCAAGAGCTCTTCTACATATGATTCAATATATGAACCTATA
AACCCTCGACCCTGTGTGGCAGATACGCTG

BS04024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32018-PA 1695 Zyx102EF-RA 1..864 17..880 4295 99.8 Plus
CG32018-PF 1695 Zyx102EF-RF 1..864 17..880 4295 99.8 Plus
CG32018-PD 1695 Zyx102EF-RD 1..864 17..880 4295 99.8 Plus
CG32018-PB 1758 Zyx102EF-RB 1..610 17..626 3050 100 Plus
CG32018-PE 1758 Zyx102EF-RE 1..610 17..626 3050 100 Plus
CG32018-PC 1758 Zyx102EF-RC 1..610 17..626 3050 100 Plus
CG32018-PG 1572 Zyx102EF-RG 4..424 206..626 2105 100 Plus
CG32018-PB 1758 Zyx102EF-RB 673..927 626..880 1250 99.6 Plus
CG32018-PE 1758 Zyx102EF-RE 673..927 626..880 1250 99.6 Plus
CG32018-PC 1758 Zyx102EF-RC 673..927 626..880 1250 99.6 Plus
CG32018-PG 1572 Zyx102EF-RG 487..741 626..880 1250 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1979 CG32018-RA 209..1072 17..880 4305 99.9 Plus
Zyx-RL 2180 CG32018-RL 347..956 17..626 3050 100 Plus
Zyx-RB 2061 CG32018-RB 228..837 17..626 3050 100 Plus
Zyx-RL 2180 CG32018-RL 1019..1273 626..880 1260 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1059419..1059840 626..205 2110 100 Minus
4 1348131 4 1060411..1060604 210..17 970 100 Minus
4 1348131 4 1059101..1059289 814..626 945 100 Minus
4 1348131 4 1058439..1058506 880..813 325 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 19:25:32 has no hits.

BS04024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:07 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PF 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:28 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32018-PF 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:33 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 206..1072 12..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:20:29 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 206..1072 12..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:20:29 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1058439..1058504 815..880 98 <- Minus
4 1059101..1059288 627..814 100 <- Minus
4 1059419..1059836 209..626 100 <- Minus
4 1060413..1060607 12..208 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:33 Download gff for BS04024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1079065..1079130 815..880 98 <- Minus
arm_4 1079727..1079914 627..814 100 <- Minus
arm_4 1080045..1080462 209..626 100 <- Minus
arm_4 1081039..1081233 12..208 98   Minus

BS04024.complete Sequence

1727 bp assembled on 2009-02-12

> BS04024.complete
GAAGTTATCAGTCGACATGGAGTCTGTGGCCCAGCAACTTAGAGAGCTGT
CGCTTCCAAAAGGTGACACAGGCTCACCGCTTGTATGTATTGGACATGGA
AAAGTTGCGAAGCTAGTCGCCAAGATAAGTAATAATCAAAATGCATCAGT
AAAGAGGAGATTGGATATACCTCCTAAGCCGCCGATAAAATATAATGAAA
TGCCTCAGGTTCCATCAAGCAGACAGGTTTTGTGTTCGCGGGAACCACTA
TATTCACAACCTCTGATTGGAGTCGAGAAAACAATGAGGGGGCATATGCC
TTTTAGAAAATACCTCAGCTCTGAATTCGGAGTTGCTGATACTCAAATAA
ACAGAAAAACAACTTTAGATAATCCGGCAATTTTGGAACAGCAATTAGAA
GCTCTTGCTTACCATAAACTTCAAATGGAAAAAAAGGGTCTTTTGGGAGT
ACAAGCTAAGCCAACACAACCTCTCAACAGCTTTACAAAGCCCCTTTCAA
AGACTTTAAGCAAAAGCTTAATATATTCTAATTTAGGTTCTGTTCGCAAA
GAAATAGAAACATTAGAACTATTAACAGACGAAACTAAGATTTCTGCGAG
TACATATTCAAACGTTAATGAAACTGACAACGAAAAAGATGAGTTACCGC
CACCACCTAGTCCAGAGAGCGCTGTGAGTTCTTCATACAGTGAGCTTCGT
CACGCCACTTTGGAATTCAACAAACCAATTGATTATTTACAAAATAACCA
GACAACGAATCCTTTACAAATATATGCAAACCAATATGCGATGCAGCATG
ATGCCACAGGCAAGAGCTCTTCTACATATGATTCAATATATGAACCTATA
AACCCTCGACCCTGTGTTGCAGATACGCTGCCTCGTGAAAGTTATAATCT
GCATAATTCATACGTTAATGATAATAATCCAAACATTTCCCATGAATACA
ATATTTCGAATTCGATTGAAGCTAACCAAACACTATACATACATGGTAAT
GCTAGAACTACATTTTATGACGTGAACAGCATCCATAGAAATGATAAGGA
AGGTCTAAAAAATTACATTTCAATACCCACCGAACCGGTTCAAGAATTGG
AAAACTACGGTAGGTGTGTCAAATGCAATTCACGTGTACTTGGAGAAAGT
AGTGGATGTACAGCAATGGATCAAATATACCACATATTTTGCTTCACATG
TACAGATTGCCAAATTAACTTACAGGGAAAACCTTTCTATGCATTAGACG
GCAAACCCTATTGCGAATATGATTATTTACAAACACTGGAAAAATGCTCT
GTTTGCATGGAACCAATTTTAGAGAGAATTCTTAGAGCTACTGGAAAACC
ATATCATCCGCAATGTTTTACATGTGTTGTATGCGGAAAAAGCTTAGATG
GGCTATTATTTACAGTTGATGCTACTAATCAAAACTATTGCATAACAGAT
TTTCATAAAAAATTTGCCCCTCGCTGTTGTGTCTGCAAGCAACCAATTAT
GCCAGATCCAGGACAAGAAGAAACGATCAGAGTAGTGGCCCTAGATCGAA
GTTTTCATCTAGAATGTTATAAGTGTGAGGACTGTGGGCTCTTACTATCA
TCTGAAGCTGAGGGCCGCGGATGTTATCCCCTGGATGACCATGTTCTATG
TAAAAGCTGCAATGCAAAAAGGGTTCAGGCTTTAACAAACCGCATGACGT
CAGAACATTAAAAGCTTTCTAGACCAT

BS04024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1695 CG32018-PA 1..1695 17..1711 8475 100 Plus
Zyx-RL 1758 CG32018-PL 673..1758 626..1711 5430 100 Plus
Zyx-RH 1491 CG32018-PH 406..1491 626..1711 5430 100 Plus
Zyx-RL 1758 CG32018-PL 1..610 17..626 3050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-RA 1979 CG32018-RA 209..1904 17..1712 8480 100 Plus
Zyx-RL 2180 CG32018-RL 1019..2105 626..1712 5435 100 Plus
Zyx-RH 1958 CG32018-RH 797..1883 626..1712 5435 100 Plus
Zyx-RL 2180 CG32018-RL 347..956 17..626 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1059419..1059840 626..205 2110 100 Minus
4 1348131 4 1057807..1058156 1458..1109 1750 100 Minus
4 1348131 4 1058207..1058506 1112..813 1500 100 Minus
4 1348131 4 1060411..1060604 210..17 970 100 Minus
4 1348131 4 1059101..1059289 814..626 945 100 Minus
4 1348131 4 1057440..1057574 1712..1578 675 100 Minus
4 1348131 4 1057632..1057760 1580..1452 615 98.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:15 has no hits.

BS04024.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:25 Download gff for BS04024.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx102EF-RC 77..685 17..625 100 -> Plus
Zyx102EF-RC 750..1832 626..1709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:21 Download gff for BS04024.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 209..1901 17..1709 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:58 Download gff for BS04024.complete
Subject Subject Range Query Range Percent Splice Strand
Zyx-RA 209..1901 17..1709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:58 Download gff for BS04024.complete
Subject Subject Range Query Range Percent Splice Strand
4 1059419..1059836 209..626 100 <- Minus
4 1057443..1057572 1580..1709 100 <- Minus
4 1057633..1057753 1459..1579 100 <- Minus
4 1057807..1058155 1110..1458 100 <- Minus
4 1058210..1058504 815..1109 100 <- Minus
4 1059101..1059288 627..814 100 <- Minus
4 1060413..1060604 17..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:21 Download gff for BS04024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1078836..1079130 815..1109 100 <- Minus
arm_4 1078069..1078198 1580..1709 100 <- Minus
arm_4 1078259..1078379 1459..1579 100 <- Minus
arm_4 1078433..1078781 1110..1458 100 <- Minus
arm_4 1079727..1079914 627..814 100 <- Minus
arm_4 1080045..1080462 209..626 100 <- Minus
arm_4 1081039..1081230 17..208 100   Minus

BS04024.pep Sequence

Translation from 16 to 1710

> BS04024.pep
MESVAQQLRELSLPKGDTGSPLVCIGHGKVAKLVAKISNNQNASVKRRLD
IPPKPPIKYNEMPQVPSSRQVLCSREPLYSQPLIGVEKTMRGHMPFRKYL
SSEFGVADTQINRKTTLDNPAILEQQLEALAYHKLQMEKKGLLGVQAKPT
QPLNSFTKPLSKTLSKSLIYSNLGSVRKEIETLELLTDETKISASTYSNV
NETDNEKDELPPPPSPESAVSSSYSELRHATLEFNKPIDYLQNNQTTNPL
QIYANQYAMQHDATGKSSSTYDSIYEPINPRPCVADTLPRESYNLHNSYV
NDNNPNISHEYNISNSIEANQTLYIHGNARTTFYDVNSIHRNDKEGLKNY
ISIPTEPVQELENYGRCVKCNSRVLGESSGCTAMDQIYHIFCFTCTDCQI
NLQGKPFYALDGKPYCEYDYLQTLEKCSVCMEPILERILRATGKPYHPQC
FTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFAPRCCVCKQPIMPDPGQ
EETIRVVALDRSFHLECYKCEDCGLLLSSEAEGRGCYPLDDHVLCKSCNA
KRVQALTNRMTSEH*

BS04024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Zyx-PA 564 CG32018-PA 1..564 1..564 3016 100 Plus
Zyx-PL 585 CG32018-PL 1..585 1..564 2984 96.4 Plus
Zyx-PB 585 CG32018-PB 1..585 1..564 2984 96.4 Plus
Zyx-PG 523 CG32018-PG 2..523 64..564 2660 96 Plus
Zyx-PH 496 CG32018-PH 1..496 90..564 2528 95.8 Plus