Clone BS04026 Report

Search the DGRC for BS04026

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptrho-RA
Protein status:BS04026.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04026.3prime Sequence

880 bp (877 high quality bases) assembled on 2005-12-01

> BS04026.3prime
ATGGTCTAGAAAGCTTTTAGGACACTCCCAGGTCGTGCAACAGATGCTGG
GTAATCACCTCACCCTGCTCCTCCATCAGCTGAGCGGTCACCGTGTTGAT
CAGGTTGAAAACGATGGCGAAGACGGTGAAGGCACAGTAGACGCCCAACG
CTAGCCACCAGATGAGCTGCTCGTACTCTCGGTGACCGAAGTTCTTTAGC
ACCAGAAAGCCGATCGTTAGTCCTGCCAGGGCTCCCGTCAGGTGGGCAAT
GTACGACACCTGGGGACCCTTGGCGAAGGCGCTTCCATCGAAGTATTGGG
TGTAGAGAGCATAGCCCAGATCGCAGGAGACAAAGATGACAACGGATCCG
AGTTGCGTGGATGCGCTCTTCATGTGCGCATAGTTCAGTGTAATGTTGGC
CAGATGTGCGGCCAACAGGGCATAGACGCCACCGCTGGCGCCCACCAGGA
AGACCTCCGAGTCGACGACACTGGTGCCCAGGGATCCGGCAAAAACGCCC
GCCATGTAGATCACGCCGATCCTGGCCGTGCCGTGCATCACCTCCAGGGG
AATGCCAAAAAACAGCTGGATGACGATATTGAAGCCCAGGTGGAACCAGT
TGGCGTGCAGGAACATGTAGCTAAAGAAGCGCCACACCTGCAGACGCCGG
TCCGGCCGATAGACCAGCACCGAATCCGACGGAATCGGAACGGGTAGCCC
GAAATTCTGGGCGGGCATTGTGTAGCGGTCGTAGGCGAAGATGGCAATCT
CAATGATGGAGATCACTAGGATGAACCAGGGCCAGTGCTGGCGGTGGACG
TACTTCAGCAGGCCGATATCCTCCGACTCCGGAAGTGGCGTGGCCGGGAT
GGCCTCGCGTTGCATGTAGATGTGCTCGCC

BS04026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1004-PA 1068 rho-RA 205..1068 880..17 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 546..1409 880..17 4320 100 Minus
rho-RA 2531 CG1004-RA 546..1409 880..17 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 750..331 2100 100 Minus
3L 28110227 3L 1467039..1467353 331..17 1575 100 Minus
3L 28110227 3L 1465691..1465822 880..749 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:50:31 has no hits.

BS04026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:10 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-PA 205..1068 17..880 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:32 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1004-PA 205..1068 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:14 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 546..1416 6..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:21 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 546..1416 6..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:21 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1465691..1465822 749..880 100 -> Minus
3L 1466490..1466907 331..748 100 -> Minus
3L 1467040..1467360 6..330 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:14 Download gff for BS04026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465691..1465822 749..880 100 -> Minus
arm_3L 1466490..1466907 331..748 100 -> Minus
arm_3L 1467040..1467360 6..330 98   Minus

BS04026.5prime Sequence

819 bp (817 high quality bases) assembled on 2005-11-29

> BS04026.5prime
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAG

BS04026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1004-PA 1068 rho-RA 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 341..1144 16..819 4020 100 Plus
rho-RA 2531 CG1004-RA 341..1144 16..819 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 351..770 2100 100 Plus
3L 28110227 3L 1465486..1465822 16..352 1685 100 Plus
3L 28110227 3L 1467039..1467088 770..819 250 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:15:50 has no hits.

BS04026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:11 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:33 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1004-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:09 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 341..1144 16..819 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:43 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 341..1144 16..819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:43 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1465486..1465822 16..352 100 -> Plus
3L 1466490..1466907 353..770 100 -> Plus
3L 1467040..1467088 771..819 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:09 Download gff for BS04026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465486..1465822 16..352 100 -> Plus
arm_3L 1466490..1466907 353..770 100 -> Plus
arm_3L 1467040..1467088 771..819 100   Plus

BS04026.complete Sequence

1100 bp (1100 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634833

> BS04026.complete
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGGT
GCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAG
CGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCTG
ATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTAC
CCAGCATCTGTTGCACGACCTGGGAGTGTCCTAAAAGCTTTCTAGACCAT

BS04026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 1068 CG1004-PB 1..1068 17..1084 5340 100 Plus
rho-RA 1068 CG1004-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 341..1409 16..1084 5345 100 Plus
rho-RA 2531 CG1004-RA 341..1409 16..1084 5345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 351..770 2100 100 Plus
3L 28110227 3L 1465486..1465822 16..352 1685 100 Plus
3L 28110227 3L 1467039..1467353 770..1084 1575 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:26:31 has no hits.

BS04026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:56 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:35 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 360..1435 16..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:51 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 342..1407 17..1082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:56 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 360..1435 16..1095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:46 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 342..1407 17..1082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:46 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1467040..1467351 771..1082 100   Plus
3L 1465487..1465822 17..352 100 -> Plus
3L 1466490..1466907 353..770 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:51 Download gff for BS04026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465487..1465822 17..352 100 -> Plus
arm_3L 1466490..1466907 353..770 100 -> Plus
arm_3L 1467040..1467351 771..1082 100   Plus

BS04026.pep Sequence

Translation from 16 to 1083

> BS04026.pep
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVS*

BS04026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
rho-PB 355 CG1004-PB 1..355 1..355 1850 100 Plus
rho-PA 355 CG1004-PA 1..355 1..355 1850 100 Plus
ru-PA 341 CG1214-PA 24..340 28..354 740 46.7 Plus
stet-PA 330 CG33166-PA 67..330 102..354 662 48.5 Plus
stet-PB 485 CG33166-PB 222..485 102..354 662 48.5 Plus