Clone Sequence Records
BS04026.3prime Sequence
880 bp (877 high quality bases) assembled on 2005-12-01
> BS04026.3prime
ATGGTCTAGAAAGCTTTTAGGACACTCCCAGGTCGTGCAACAGATGCTGG
GTAATCACCTCACCCTGCTCCTCCATCAGCTGAGCGGTCACCGTGTTGAT
CAGGTTGAAAACGATGGCGAAGACGGTGAAGGCACAGTAGACGCCCAACG
CTAGCCACCAGATGAGCTGCTCGTACTCTCGGTGACCGAAGTTCTTTAGC
ACCAGAAAGCCGATCGTTAGTCCTGCCAGGGCTCCCGTCAGGTGGGCAAT
GTACGACACCTGGGGACCCTTGGCGAAGGCGCTTCCATCGAAGTATTGGG
TGTAGAGAGCATAGCCCAGATCGCAGGAGACAAAGATGACAACGGATCCG
AGTTGCGTGGATGCGCTCTTCATGTGCGCATAGTTCAGTGTAATGTTGGC
CAGATGTGCGGCCAACAGGGCATAGACGCCACCGCTGGCGCCCACCAGGA
AGACCTCCGAGTCGACGACACTGGTGCCCAGGGATCCGGCAAAAACGCCC
GCCATGTAGATCACGCCGATCCTGGCCGTGCCGTGCATCACCTCCAGGGG
AATGCCAAAAAACAGCTGGATGACGATATTGAAGCCCAGGTGGAACCAGT
TGGCGTGCAGGAACATGTAGCTAAAGAAGCGCCACACCTGCAGACGCCGG
TCCGGCCGATAGACCAGCACCGAATCCGACGGAATCGGAACGGGTAGCCC
GAAATTCTGGGCGGGCATTGTGTAGCGGTCGTAGGCGAAGATGGCAATCT
CAATGATGGAGATCACTAGGATGAACCAGGGCCAGTGCTGGCGGTGGACG
TACTTCAGCAGGCCGATATCCTCCGACTCCGGAAGTGGCGTGGCCGGGAT
GGCCTCGCGTTGCATGTAGATGTGCTCGCC
BS04026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1004-PA | 1068 | rho-RA | 205..1068 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 546..1409 | 880..17 | 4320 | 100 | Minus |
rho-RA | 2531 | CG1004-RA | 546..1409 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 750..331 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 1467039..1467353 | 331..17 | 1575 | 100 | Minus |
3L | 28110227 | 3L | 1465691..1465822 | 880..749 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:31 has no hits.
BS04026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:10 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-PA | 205..1068 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:32 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1004-PA | 205..1068 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:14 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 546..1416 | 6..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:21 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 546..1416 | 6..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:21 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1465691..1465822 | 749..880 | 100 | -> | Minus |
3L | 1466490..1466907 | 331..748 | 100 | -> | Minus |
3L | 1467040..1467360 | 6..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:14 Download gff for
BS04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465691..1465822 | 749..880 | 100 | -> | Minus |
arm_3L | 1466490..1466907 | 331..748 | 100 | -> | Minus |
arm_3L | 1467040..1467360 | 6..330 | 98 | | Minus |
BS04026.5prime Sequence
819 bp (817 high quality bases) assembled on 2005-11-29
> BS04026.5prime
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAG
BS04026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1004-PA | 1068 | rho-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 341..1144 | 16..819 | 4020 | 100 | Plus |
rho-RA | 2531 | CG1004-RA | 341..1144 | 16..819 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 351..770 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465486..1465822 | 16..352 | 1685 | 100 | Plus |
3L | 28110227 | 3L | 1467039..1467088 | 770..819 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:15:50 has no hits.
BS04026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:11 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:33 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1004-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:09 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 341..1144 | 16..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:43 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 341..1144 | 16..819 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:43 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1465486..1465822 | 16..352 | 100 | -> | Plus |
3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
3L | 1467040..1467088 | 771..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:09 Download gff for
BS04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465486..1465822 | 16..352 | 100 | -> | Plus |
arm_3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
arm_3L | 1467040..1467088 | 771..819 | 100 | | Plus |
BS04026.complete Sequence
1100 bp (1100 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634833
> BS04026.complete
GAAGTTATCAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCA
AGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAG
CATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTC
CAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCA
GCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCC
ATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTA
CGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTG
AGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTC
GGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGA
CCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCA
ACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATT
CCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGC
GGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCT
TCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTG
GCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACT
CGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACA
CCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTAC
ATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGGT
GCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAG
CGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCTG
ATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTAC
CCAGCATCTGTTGCACGACCTGGGAGTGTCCTAAAAGCTTTCTAGACCAT
BS04026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 1068 | CG1004-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
rho-RA | 1068 | CG1004-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 341..1409 | 16..1084 | 5345 | 100 | Plus |
rho-RA | 2531 | CG1004-RA | 341..1409 | 16..1084 | 5345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 351..770 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465486..1465822 | 16..352 | 1685 | 100 | Plus |
3L | 28110227 | 3L | 1467039..1467353 | 770..1084 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:26:31 has no hits.
BS04026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:56 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:35 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 360..1435 | 16..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:51 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 342..1407 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:56 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 360..1435 | 16..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:46 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 342..1407 | 17..1082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:46 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1467040..1467351 | 771..1082 | 100 | | Plus |
3L | 1465487..1465822 | 17..352 | 100 | -> | Plus |
3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:51 Download gff for
BS04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465487..1465822 | 17..352 | 100 | -> | Plus |
arm_3L | 1466490..1466907 | 353..770 | 100 | -> | Plus |
arm_3L | 1467040..1467351 | 771..1082 | 100 | | Plus |
BS04026.pep Sequence
Translation from 16 to 1083
> BS04026.pep
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVS*
BS04026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-PB | 355 | CG1004-PB | 1..355 | 1..355 | 1850 | 100 | Plus |
rho-PA | 355 | CG1004-PA | 1..355 | 1..355 | 1850 | 100 | Plus |
ru-PA | 341 | CG1214-PA | 24..340 | 28..354 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 67..330 | 102..354 | 662 | 48.5 | Plus |
stet-PB | 485 | CG33166-PB | 222..485 | 102..354 | 662 | 48.5 | Plus |