Clone Sequence Records
BS04027.3prime Sequence
944 bp (818 high quality bases) assembled on 2005-12-01
> BS04027.3prime
ATGGTCTAGAAAGCTTTTAGCCAGTGGGCAAATAAGCCTGATTCTCATAG
CCAGCGAAATTGCCCAATACCATTGATATGCGAGATGGTGAGTGCTGAAT
TCCATTTCCGGATTTATCGTCTAATCCATTAGTTTGACCATTTGATTTCG
CACTGGTGGGCAGTACGAAATTTGCATTTCGACAGCGTCGATGGAGGAAT
AATCTCAGTTTGAAGAAGGCAAAGAGCAGCACATAAATGCAACAGGACAA
CAAAAGTACGCCAACTACCGTGGTGAAGGCATTTTGAGGTTTGCTCCAGT
CAATCACATAGTAGATATAAGGTTTGCCTTTCTTATTAATGCCACCGCAC
AAATGATAGATATAGGAAAAGATGGCAAACACAACTCCGAATAGTACTGG
CAGAAATATATGCAGCAAACGCAGGGGATGAGCTACAATCCACAGATCGA
TGAACATGCAAATCGAGTTGAATGCATGAGTGAGTACATTTGTGGCATCC
AAGGCGCTTTCATTAGCATCATATAGAATACTCCAGTAGATGATGGTGAT
GACGATGGACAAGACCAGAGATATGATGTGCATACCCCAGTACAAGCGAA
AATAGCTAAAGTAGCTCTTCATATTCAACAGTTTATCCGCATATTCTGGA
TGATAATGCCATATAGTGACTAGAATAGCACCCAAGACGTTGGTCAACAT
GCACATCCATATGCCCCAGTTGGTCATGTAGATAAAGTAGAGCCAATAAC
TGGTTGCATCATCCGTTTCTGGCCACATTGAGATTATTACCACGACCACA
AAGAACATGGCCATGAACCAGCGATAAAACAAATAGGCCATACTCTTGGT
ACATGATTTGCACTGAGACTTGACAAAATCATCGGGGGTATCATGGTCGA
AACCGCAGCTTTTGCGCTGGAACTCTTTCTTCATGGGTGTACGA
BS04027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PA | 957 | CG13101-RA | 41..957 | 933..17 | 4535 | 99.7 | Minus |
CG13101-PB | 957 | CG13101-RB | 41..957 | 933..17 | 4535 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 453..1381 | 944..17 | 4590 | 99.7 | Minus |
CG13101-RA | 1396 | CG13101-RA | 388..1316 | 944..17 | 4590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978042..8978361 | 17..336 | 1585 | 99.7 | Plus |
2L | 23513712 | 2L | 8978858..8979086 | 637..865 | 1115 | 99.1 | Plus |
2L | 23513712 | 2L | 8978420..8978605 | 332..517 | 930 | 100 | Plus |
2L | 23513712 | 2L | 8978663..8978787 | 513..637 | 610 | 99.2 | Plus |
2L | 23513712 | 2L | 8980048..8980130 | 863..944 | 365 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:27:51 has no hits.
BS04027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:12 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 30..957 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:35 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 30..957 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:21:17 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 389..1321 | 9..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:51 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 389..1321 | 9..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:51 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8978037..8978357 | 9..332 | 98 | <- | Plus |
2L | 8978421..8978604 | 333..516 | 100 | <- | Plus |
2L | 8978667..8978786 | 517..636 | 100 | <- | Plus |
2L | 8978858..8979083 | 637..862 | 99 | <- | Plus |
2L | 8980048..8980129 | 863..943 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:21:17 Download gff for
BS04027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978037..8978357 | 9..332 | 98 | <- | Plus |
arm_2L | 8978421..8978604 | 333..516 | 100 | <- | Plus |
arm_2L | 8978667..8978786 | 517..636 | 100 | <- | Plus |
arm_2L | 8978858..8979083 | 637..862 | 99 | <- | Plus |
arm_2L | 8980048..8980129 | 863..943 | 98 | | Plus |
BS04027.5prime Sequence
871 bp (775 high quality bases) assembled on 2005-11-29
> BS04027.5prime
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAAATCAAT
GGTCAAACTAATGGATTAGAC
BS04027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PA | 957 | CG13101-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
CG13101-PB | 957 | CG13101-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 425..1279 | 17..871 | 4230 | 99.8 | Plus |
CG13101-RA | 1396 | CG13101-RA | 360..1214 | 17..871 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978858..8979086 | 353..125 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 8978144..8978361 | 871..654 | 1030 | 98.2 | Minus |
2L | 23513712 | 2L | 8978420..8978605 | 658..473 | 930 | 100 | Minus |
2L | 23513712 | 2L | 8978663..8978787 | 477..353 | 610 | 99.2 | Minus |
2L | 23513712 | 2L | 8980048..8980158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:09 has no hits.
BS04027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:13 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:36 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:23 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 354..1214 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:30 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 354..1214 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:30 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8978144..8978357 | 658..871 | 99 | <- | Minus |
2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
2L | 8980048..8980164 | 10..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:23 Download gff for
BS04027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978144..8978357 | 658..871 | 99 | <- | Minus |
arm_2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
arm_2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
arm_2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
arm_2L | 8980048..8980164 | 10..127 | 97 | | Minus |
BS04027.complete Sequence
989 bp (989 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634834
> BS04027.complete
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAATCAAAT
GGTCAAACTAATGGATTAGACGATAAATCCGGAAATGGAATTCAGCACTC
ACCATCTCGCATATCAATGGTATTGGGCAATTTCGCTGGCTATGAGAATC
AGGCTTATTTGCCCACTGGCTAAAAGCTTTCTAGACCAT
BS04027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 957 | CG13101-PB | 1..957 | 17..973 | 4785 | 100 | Plus |
CG13101-RA | 957 | CG13101-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 425..1381 | 17..973 | 4785 | 100 | Plus |
CG13101-RA | 1396 | CG13101-RA | 360..1316 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978042..8978361 | 973..654 | 1585 | 99.7 | Minus |
2L | 23513712 | 2L | 8978858..8979086 | 353..125 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 8978420..8978605 | 658..473 | 930 | 100 | Minus |
2L | 23513712 | 2L | 8978663..8978787 | 477..353 | 610 | 99.2 | Minus |
2L | 23513712 | 2L | 8980048..8980158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:13:13 has no hits.
BS04027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:58 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:37 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 417..1384 | 10..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:43 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 360..1314 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:58 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 417..1384 | 10..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:34 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 360..1314 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:34 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
2L | 8980048..8980158 | 17..127 | 100 | | Minus |
2L | 8978044..8978357 | 658..971 | 100 | <- | Minus |
2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:43 Download gff for
BS04027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
arm_2L | 8980048..8980158 | 17..127 | 100 | | Minus |
arm_2L | 8978044..8978357 | 658..971 | 100 | <- | Minus |
arm_2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
arm_2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
BS04027.pep Sequence
Translation from 16 to 972
> BS04027.pep
MSRMSKLQVIVHPVKKEFQRKSCGFDHDTPDDFVKSQWQSCTKSMAYLFY
RWFMAMFFVVVVIISMWPETDDATSYWLYFIYMTNWGIWMCMLTNVLGAI
LVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITIIYWSIL
YDANESALDATNVLTHAFNSICMFIDLWIVAHPLRLLHIFLPVLFGVVFA
IFSYIYHLCGGINKKGKPYIYYVIDWSKPQNAFTTVVGVLLLSCCIYVLL
FAFFKLRLFLHRRCRNANFVLPTSAKSNGQTNGLDDKSGNGIQHSPSRIS
MVLGNFAGYENQAYLPTG*
BS04027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PB | 318 | CG13101-PB | 1..318 | 1..318 | 1726 | 100 | Plus |
CG13101-PA | 318 | CG13101-PA | 1..318 | 1..318 | 1726 | 100 | Plus |
CG9555-PC | 275 | CG9555-PC | 12..267 | 13..277 | 488 | 35.2 | Plus |
CG9555-PA | 275 | CG9555-PA | 12..267 | 13..277 | 488 | 35.2 | Plus |
rost-PC | 275 | CG9552-PC | 13..261 | 16..262 | 470 | 34.8 | Plus |