Clone BS04027 Report

Search the DGRC for BS04027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13101-RA
Protein status:BS04027.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04027.3prime Sequence

944 bp (818 high quality bases) assembled on 2005-12-01

> BS04027.3prime
ATGGTCTAGAAAGCTTTTAGCCAGTGGGCAAATAAGCCTGATTCTCATAG
CCAGCGAAATTGCCCAATACCATTGATATGCGAGATGGTGAGTGCTGAAT
TCCATTTCCGGATTTATCGTCTAATCCATTAGTTTGACCATTTGATTTCG
CACTGGTGGGCAGTACGAAATTTGCATTTCGACAGCGTCGATGGAGGAAT
AATCTCAGTTTGAAGAAGGCAAAGAGCAGCACATAAATGCAACAGGACAA
CAAAAGTACGCCAACTACCGTGGTGAAGGCATTTTGAGGTTTGCTCCAGT
CAATCACATAGTAGATATAAGGTTTGCCTTTCTTATTAATGCCACCGCAC
AAATGATAGATATAGGAAAAGATGGCAAACACAACTCCGAATAGTACTGG
CAGAAATATATGCAGCAAACGCAGGGGATGAGCTACAATCCACAGATCGA
TGAACATGCAAATCGAGTTGAATGCATGAGTGAGTACATTTGTGGCATCC
AAGGCGCTTTCATTAGCATCATATAGAATACTCCAGTAGATGATGGTGAT
GACGATGGACAAGACCAGAGATATGATGTGCATACCCCAGTACAAGCGAA
AATAGCTAAAGTAGCTCTTCATATTCAACAGTTTATCCGCATATTCTGGA
TGATAATGCCATATAGTGACTAGAATAGCACCCAAGACGTTGGTCAACAT
GCACATCCATATGCCCCAGTTGGTCATGTAGATAAAGTAGAGCCAATAAC
TGGTTGCATCATCCGTTTCTGGCCACATTGAGATTATTACCACGACCACA
AAGAACATGGCCATGAACCAGCGATAAAACAAATAGGCCATACTCTTGGT
ACATGATTTGCACTGAGACTTGACAAAATCATCGGGGGTATCATGGTCGA
AACCGCAGCTTTTGCGCTGGAACTCTTTCTTCATGGGTGTACGA

BS04027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PA 957 CG13101-RA 41..957 933..17 4535 99.7 Minus
CG13101-PB 957 CG13101-RB 41..957 933..17 4535 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 453..1381 944..17 4590 99.7 Minus
CG13101-RA 1396 CG13101-RA 388..1316 944..17 4590 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978042..8978361 17..336 1585 99.7 Plus
2L 23513712 2L 8978858..8979086 637..865 1115 99.1 Plus
2L 23513712 2L 8978420..8978605 332..517 930 100 Plus
2L 23513712 2L 8978663..8978787 513..637 610 99.2 Plus
2L 23513712 2L 8980048..8980130 863..944 365 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 19:27:51 has no hits.

BS04027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:12 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 30..957 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:35 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 30..957 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:21:17 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 389..1321 9..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:51 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 389..1321 9..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:51 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8978037..8978357 9..332 98 <- Plus
2L 8978421..8978604 333..516 100 <- Plus
2L 8978667..8978786 517..636 100 <- Plus
2L 8978858..8979083 637..862 99 <- Plus
2L 8980048..8980129 863..943 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:21:17 Download gff for BS04027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978037..8978357 9..332 98 <- Plus
arm_2L 8978421..8978604 333..516 100 <- Plus
arm_2L 8978667..8978786 517..636 100 <- Plus
arm_2L 8978858..8979083 637..862 99 <- Plus
arm_2L 8980048..8980129 863..943 98   Plus

BS04027.5prime Sequence

871 bp (775 high quality bases) assembled on 2005-11-29

> BS04027.5prime
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAAATCAAT
GGTCAAACTAATGGATTAGAC

BS04027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PA 957 CG13101-RA 1..828 17..844 4140 100 Plus
CG13101-PB 957 CG13101-RB 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 425..1279 17..871 4230 99.8 Plus
CG13101-RA 1396 CG13101-RA 360..1214 17..871 4230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978858..8979086 353..125 1145 100 Minus
2L 23513712 2L 8978144..8978361 871..654 1030 98.2 Minus
2L 23513712 2L 8978420..8978605 658..473 930 100 Minus
2L 23513712 2L 8978663..8978787 477..353 610 99.2 Minus
2L 23513712 2L 8980048..8980158 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:31:09 has no hits.

BS04027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:13 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:36 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:23 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 354..1214 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:30 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 354..1214 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:30 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8978144..8978357 658..871 99 <- Minus
2L 8978421..8978604 474..657 100 <- Minus
2L 8978667..8978786 354..473 100 <- Minus
2L 8978858..8979083 128..353 100 <- Minus
2L 8980048..8980164 10..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:23 Download gff for BS04027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978144..8978357 658..871 99 <- Minus
arm_2L 8978421..8978604 474..657 100 <- Minus
arm_2L 8978667..8978786 354..473 100 <- Minus
arm_2L 8978858..8979083 128..353 100 <- Minus
arm_2L 8980048..8980164 10..127 97   Minus

BS04027.complete Sequence

989 bp (989 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634834

> BS04027.complete
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAATCAAAT
GGTCAAACTAATGGATTAGACGATAAATCCGGAAATGGAATTCAGCACTC
ACCATCTCGCATATCAATGGTATTGGGCAATTTCGCTGGCTATGAGAATC
AGGCTTATTTGCCCACTGGCTAAAAGCTTTCTAGACCAT

BS04027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 957 CG13101-PB 1..957 17..973 4785 100 Plus
CG13101-RA 957 CG13101-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 425..1381 17..973 4785 100 Plus
CG13101-RA 1396 CG13101-RA 360..1316 17..973 4785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978042..8978361 973..654 1585 99.7 Minus
2L 23513712 2L 8978858..8979086 353..125 1145 100 Minus
2L 23513712 2L 8978420..8978605 658..473 930 100 Minus
2L 23513712 2L 8978663..8978787 477..353 610 99.2 Minus
2L 23513712 2L 8980048..8980158 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:13:13 has no hits.

BS04027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:58 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 1..957 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:37 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 417..1384 10..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:43 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 360..1314 17..971 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:58 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 417..1384 10..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:34 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 360..1314 17..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:34 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8978858..8979083 128..353 100 <- Minus
2L 8980048..8980158 17..127 100   Minus
2L 8978044..8978357 658..971 100 <- Minus
2L 8978421..8978604 474..657 100 <- Minus
2L 8978667..8978786 354..473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:43 Download gff for BS04027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978858..8979083 128..353 100 <- Minus
arm_2L 8980048..8980158 17..127 100   Minus
arm_2L 8978044..8978357 658..971 100 <- Minus
arm_2L 8978421..8978604 474..657 100 <- Minus
arm_2L 8978667..8978786 354..473 100 <- Minus

BS04027.pep Sequence

Translation from 16 to 972

> BS04027.pep
MSRMSKLQVIVHPVKKEFQRKSCGFDHDTPDDFVKSQWQSCTKSMAYLFY
RWFMAMFFVVVVIISMWPETDDATSYWLYFIYMTNWGIWMCMLTNVLGAI
LVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITIIYWSIL
YDANESALDATNVLTHAFNSICMFIDLWIVAHPLRLLHIFLPVLFGVVFA
IFSYIYHLCGGINKKGKPYIYYVIDWSKPQNAFTTVVGVLLLSCCIYVLL
FAFFKLRLFLHRRCRNANFVLPTSAKSNGQTNGLDDKSGNGIQHSPSRIS
MVLGNFAGYENQAYLPTG*

BS04027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PB 318 CG13101-PB 1..318 1..318 1726 100 Plus
CG13101-PA 318 CG13101-PA 1..318 1..318 1726 100 Plus
CG9555-PC 275 CG9555-PC 12..267 13..277 488 35.2 Plus
CG9555-PA 275 CG9555-PA 12..267 13..277 488 35.2 Plus
rost-PC 275 CG9552-PC 13..261 16..262 470 34.8 Plus