Clone Sequence Records
BS04032.3prime Sequence
933 bp (719 high quality bases) assembled on 2005-12-01
> BS04032.3prime
ATGGTCTAGAAAGCTTCTACGAAGATTTTCCATTAAGTTTACTCAGTTCA
GTTGGTTCGCCACTATCGCCATGTACCAAGCGGGACTCGACGAGCGGTGC
TGAAATCTGCAAATGCAGAACGTAGTCGGCAGTTTGCTCCAAAAGGAATT
CCAGATCATCGGGGCAGTCTATCGTGGGGAAATCAATATTAGTCGACTCC
TTGAGGATCACACCAATAGTCTTGTCCGCACTCATCAGAAACAAAGGTGC
ATTCGCCTTGGCGAGCTCCTTTTGCAATGAGCCCATTCCGCGAGCTGCCG
TAAAATCGAATTCATGCACGTGGGCGCAATCCAAGACCACAGGTGCGGTT
CCATGAATGGTCAGAGCTTTTGAGATGCCCGAACGAACCCATTCGACTGC
CGGGAAGTACAGTGAACTGTGCTTAGGGCGAATCAGAATATAATTGATGC
CATTGGTGGTTTGCAGTTTGGAGACACTCAGTACGGGTCGAGCGGCTCGG
TAAACCAGAAACGCCACATCGGTACTCACGCCCAGCAGAAGACCGATCTC
GACGCCCACAGCCAGACTCATTACGAATGTAATGGCACCTGGAAGCAGCT
CCCGCCGGCTGCACCGCCACAGCGGCTTAATGACCTCGAACTCAATCATG
AATATCACCGCCGAGATGATAACCGCACTGAGAGCAGCCTTCGGGATGTA
CTGGAAATAAGGTGCCAGGAGGCCGAGTGCCAACAGAACCAGCACGCTTG
TGTAGCAGCCTCCAAGCGGCGTCCTTACTCCACTGGCGTGGTTAACAGCG
CTGCGCGAGAAGGATCCTGTCACCGGCATGGAGCTGCAGAACGCGCCACA
AATGTTGCTCATGGAAAAGTGCACCAGTTCCCGCGTCGGACTCAGTCCAG
CTCTTCAAAAGCTTTCGAAATGGCTACATTTCC
BS04032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PB | 1839 | CG6928-RB | 989..1839 | 867..17 | 4255 | 100 | Minus |
| CG6928-PA | 1839 | CG6928-RA | 989..1839 | 867..17 | 4255 | 100 | Minus |
| CG6928-PB | 1839 | CG6928-RB | 953..983 | 903..873 | 155 | 100 | Minus |
| CG6928-PA | 1839 | CG6928-RA | 953..983 | 903..873 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 2323 | CG6928-RA | 1086..2004 | 933..16 | 4495 | 99.5 | Minus |
| CG6928-RB | 2310 | CG6928-RB | 1073..1991 | 933..16 | 4495 | 99.5 | Minus |
| CG6928-RD | 2432 | CG6928-RD | 1073..1876 | 933..131 | 3920 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12006545..12007166 | 933..313 | 2955 | 98.7 | Minus |
| 3L | 28110227 | 3L | 12007220..12007400 | 313..133 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 12007616..12007732 | 132..16 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:17:02 has no hits.
BS04032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:20 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PB | 922..1839 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:43 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PA | 922..1839 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:13:23 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 1073..1991 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:22:21 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 1073..1991 | 16..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:22:21 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12006545..12007166 | 313..933 | 99 | -> | Minus |
| 3L | 12007221..12007400 | 133..312 | 100 | -> | Minus |
| 3L | 12007616..12007732 | 16..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:13:23 Download gff for
BS04032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11999645..12000266 | 313..933 | 99 | -> | Minus |
| arm_3L | 12000321..12000500 | 133..312 | 100 | -> | Minus |
| arm_3L | 12000716..12000832 | 16..132 | 100 | | Minus |
BS04032.5prime Sequence
834 bp (790 high quality bases) assembled on 2005-12-01
> BS04032.5prime
GAAGTTATCAGTCGACATGAGCCTGAGGAAGTGGGGATACCGCCTGCTGC
CGGGTCTAAAGTGGCTGCACGGTTATACTGGCCAAGATGCAGTTGCGGAT
CTGATAGCCGGAGTGACGGTCGGCCTGACGGTGTTGCCCCAAGGACTGGC
CTACGCTACGCTGGCGGGACTGGAGCCCCAATATGGTCTGTACTCCGCCT
TTGTGGGCGGTATTATATACGCCATGCTGGGCAGCTGCCGGCAGGTGACC
ATTGGACCCACGGCTTTGCTCGCACTGATGACAAGCCGGCACACGGGATT
TGGACTGGGATCGGGTCCAGCGTACGCGATACTTTTGTGCCTCATCTCTG
GTGTTGTGGAGCTGGGTATGGCAGTGCTGAAACTGGGTGCCCTGGTGGAC
CTGATATCACTGCCAGTTACCGTGGGATTCACCTCGGCCACCGCCGTCAT
CATTGGCACCTCGCAGCTAAAGGGTTTGCTGGGACTGCGTGGTGGATCCG
GGTCTGATTTCATCAATACCATGCGCTCCGTGTTCGGAAATCTACACAAA
GTTAGAACTGGTGATTTTACCCTTGGTTTGACTTCCATTATAGTTTTGCT
ACTTCTGCGGAAACTAAAAGACGTTAAGCTGGATGGTCGAATCCGGAACT
TGCGAACACAGCAGCTTGTAAGTGGTAGCATCTGGGTAATAGGCACCGGT
CGGAATGCGCTGGTCGTACTGGTGACCAGTGTGCTGGCCTACAGCACATG
TGAGCAGATGGAGAGCTGCCCGTTCATCCTTACTGGAAAGGTCAAAAGCG
GTCTGCCCAACGTTTTCCTGCCAAAGTTTGAGAC
BS04032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PB | 1839 | CG6928-RB | 1..818 | 17..834 | 4040 | 99.7 | Plus |
| CG6928-PA | 1839 | CG6928-RA | 1..818 | 17..834 | 4040 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RD | 2432 | CG6928-RD | 151..969 | 16..834 | 4065 | 99.8 | Plus |
| CG6928-RC | 2445 | CG6928-RC | 164..982 | 16..834 | 4065 | 99.8 | Plus |
| CG6928-RA | 2323 | CG6928-RA | 164..982 | 16..834 | 4065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12005264..12005858 | 16..610 | 2975 | 100 | Plus |
| 3L | 28110227 | 3L | 12005916..12006140 | 610..834 | 1095 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:45:32 has no hits.
BS04032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:21 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PB | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:44 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:31 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..982 | 7..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:42 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..982 | 7..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:42 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12005256..12005858 | 7..610 | 99 | -> | Plus |
| 3L | 12005917..12006140 | 611..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:31 Download gff for
BS04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11998356..11998958 | 7..610 | 99 | -> | Plus |
| arm_3L | 11999017..11999240 | 611..834 | 99 | | Plus |
BS04032.complete Sequence
1871 bp assembled on 2008-01-02
GenBank Submission: FJ634835
> BS04032.complete
GAAGTTATCAGTCGACATGAGCCTGAGGAAGTGGGGATACCGCCTGCTGC
CGGGTCTAAAGTGGCTGCACGGTTATACTGGCCAAGATGCAGTTGCGGAT
CTGATAGCCGGAGTGACGGTCGGCCTGACGGTGTTGCCCCAAGGACTGGC
CTACGCTACGCTGGCGGGACTGGAGCCCCAATATGGTCTGTACTCCGCCT
TTGTGGGCGGTATTATATACGCCATGCTGGGCAGCTGCCGGCAGGTGACC
ATTGGACCCACGGCTTTGCTCGCACTGATGACAAGCCGGCACACGGGATT
TGGACTGGGATCGGGTCCAGCGTACGCGATACTTTTGTGCCTCATCTCTG
GTGTTGTGGAGCTGGGTATGGCAGTGCTGAAACTGGGTGCCCTGGTGGAC
CTGATATCACTGCCAGTTACCGTGGGATTCACCTCGGCCACCGCCGTCAT
CATTGGCACCTCGCAGCTAAAGGGTTTGCTGGGACTGCGTGGTGGATCCG
GGTCTGATTTCATCAATACCATGCGCTCCGTGTTCGGAAATCTACACAAA
GTTAGAACTGGTGATTTTACCCTTGGTTTGACTTCCATTATAGTTTTGCT
ACTTCTGCGGAAACTAAAAGACGTTAAGCTGGATGGTCGAATCCGGAACT
TGCGAACACAGCAGCTTGTAAGTGGTAGCATCTGGGTAATAGGCACCGGT
CGGAATGCGCTGGTCGTACTGGTGACCAGTGTGCTGGCCTACAGCACATG
TGAGCAGATGGAGAGCTGCCCGTTCATCCTTACTGGAAAGGTCAAAAGCG
GTCTGCCCAACGTTTCACTGCCAAAGTTTGAGACCACCATACTGGACAGG
AATGGCACTGAGATCAGACAGAACTTTGAACAGATGCTCTCGGAACTGGG
CCCTTCCATGCTAATCCTACCCATTATAGCTGTGCTTGGAAATGTAGCCA
TTTCGAAAGCCTTTGGAGGAGCTGGACTGAGTCCGACGCGGGAACTGGTT
GCACTTTCCATGAGCAACATTTGTGGCGCGTTCTGCAGCTCCATGCCGGT
GACAGGATCCTTCTCGCGCAGCGCTGTTAACCACGCCAGTGGAGTAAGGA
CGCCGCTTGGAGGCTGCTACACAAGCGTGCTGGTTCTGTTGGCACTCGGC
CTCCTGGCACCTTATTTCCAGTACATCCCGAAGGCTGCTCTCAGTGCGGT
TATCATCTCGGCGGTGATATTCATGATTGAGTTCGAGGTCATTAAGCCGC
TGTGGCGGTGCAGCCGGCGGGAGCTGCTTCCAGGTGCCATTACATTCGTA
ATGAGTCTGGCTGTGGGCGTCGAGATCGGTCTTCTGCTGGGCGTGAGTAC
CGATGTGGCGTTTCTGGTTTACCGAGCCGCTCGACCCGTACTGAGTGTCT
CCAAACTGCAAACCACCAATGGCATCAATTATATTCTGATTCGCCCTAAG
CACAGTTCACTGTACTTCCCGGCAGTCGAATGGGTTCGTTCGGGCATCTC
AAAAGCTCTGACCATTCATGGAACCGCACCTGTGGTCTTGGATTGCGCCC
ACGTGCATGAATTCGATTTTACGGCAGCTCGCGGAATGGGCTCATTGCAA
AAGGAGCTCGCCAAGGCGAATGCACCTTTGTTTCTGATGAGTGCGGACAA
GACTATTGGTGTGATCCTCAAGGAGTCGACTAATATTGATTTCCCCACGA
TAGACTGCCCCGATGATCTGGAATTCCTTTTGGAGCAAACTGCCGACTAC
GTTCTGCATTTGCAGATTTCAGCACCGCTCGTCGAGTCCCGCTTGGTACA
TGGCGATAGTGGCGAACCAACTGAACTGAGTAAACTTAATGGAAAATCTT
CGTAGAAGCTTTCTAGACCAT
BS04032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 1839 | CG6928-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG6928-RB | 1839 | CG6928-PB | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG6928-RD | 1740 | CG6928-PD | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-RA | 2323 | CG6928-RA | 164..2004 | 16..1856 | 9205 | 100 | Plus |
| CG6928-RB | 2310 | CG6928-RB | 151..1991 | 16..1856 | 9205 | 100 | Plus |
| CG6928-RD | 2432 | CG6928-RD | 151..1876 | 16..1741 | 8630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12006493..12007166 | 886..1559 | 3370 | 100 | Plus |
| 3L | 28110227 | 3L | 12005264..12005858 | 16..610 | 2975 | 100 | Plus |
| 3L | 28110227 | 3L | 12005916..12006192 | 610..886 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 12007220..12007400 | 1559..1739 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 12007616..12007732 | 1740..1856 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:53 has no hits.
BS04032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:37 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 1..1839 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:12 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 165..2003 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:54 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 152..1990 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:37 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RA | 156..2004 | 7..1856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:22 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6928-RB | 152..1990 | 17..1855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:22 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12007221..12007400 | 1560..1739 | 100 | -> | Plus |
| 3L | 12007616..12007731 | 1740..1855 | 100 | | Plus |
| 3L | 12005265..12005858 | 17..610 | 100 | -> | Plus |
| 3L | 12005917..12006192 | 611..886 | 100 | -> | Plus |
| 3L | 12006494..12007166 | 887..1559 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:54 Download gff for
BS04032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11998365..11998958 | 17..610 | 100 | -> | Plus |
| arm_3L | 11999017..11999292 | 611..886 | 100 | -> | Plus |
| arm_3L | 11999594..12000266 | 887..1559 | 100 | -> | Plus |
| arm_3L | 12000321..12000500 | 1560..1739 | 100 | -> | Plus |
| arm_3L | 12000716..12000831 | 1740..1855 | 100 | | Plus |
BS04032.pep Sequence
Translation from 16 to 1854
> BS04032.pep
MSLRKWGYRLLPGLKWLHGYTGQDAVADLIAGVTVGLTVLPQGLAYATLA
GLEPQYGLYSAFVGGIIYAMLGSCRQVTIGPTALLALMTSRHTGFGLGSG
PAYAILLCLISGVVELGMAVLKLGALVDLISLPVTVGFTSATAVIIGTSQ
LKGLLGLRGGSGSDFINTMRSVFGNLHKVRTGDFTLGLTSIIVLLLLRKL
KDVKLDGRIRNLRTQQLVSGSIWVIGTGRNALVVLVTSVLAYSTCEQMES
CPFILTGKVKSGLPNVSLPKFETTILDRNGTEIRQNFEQMLSELGPSMLI
LPIIAVLGNVAISKAFGGAGLSPTRELVALSMSNICGAFCSSMPVTGSFS
RSAVNHASGVRTPLGGCYTSVLVLLALGLLAPYFQYIPKAALSAVIISAV
IFMIEFEVIKPLWRCSRRELLPGAITFVMSLAVGVEIGLLLGVSTDVAFL
VYRAARPVLSVSKLQTTNGINYILIRPKHSSLYFPAVEWVRSGISKALTI
HGTAPVVLDCAHVHEFDFTAARGMGSLQKELAKANAPLFLMSADKTIGVI
LKESTNIDFPTIDCPDDLEFLLEQTADYVLHLQISAPLVESRLVHGDSGE
PTELSKLNGKSS*
BS04032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6928-PA | 612 | CG6928-PA | 1..612 | 1..612 | 3073 | 100 | Plus |
| CG6928-PB | 612 | CG6928-PB | 1..612 | 1..612 | 3073 | 100 | Plus |
| CG6928-PD | 579 | CG6928-PD | 1..579 | 1..579 | 2894 | 99.5 | Plus |
| CG6928-PC | 579 | CG6928-PC | 1..579 | 1..579 | 2894 | 99.5 | Plus |
| Esp-PB | 654 | CG7005-PB | 78..643 | 4..574 | 1102 | 41 | Plus |
